BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472593 Length=1628 Score E Sequences producing significant alignments: (Bits) Value AT1G23340.1 | Symbols: | Protein of Unknown Function (DUF239) ... 2562 0.0 AT1G70550.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1003 0.0 > AT1G23340.1 | Symbols: | Protein of Unknown Function (DUF239) | chr1:8283896-8286832 REVERSE LENGTH=1796 Length=1796 Score = 2562 bits (1387), Expect = 0.0 Identities = 1552/1632 (95%), Gaps = 10/1632 (1%) Strand=Plus/Plus Query 1 CAGAATTCTATCAATTTACGCTACTATACACTAA-TTCATTTATTTTTGAGGGGTGAGTT 59 ||||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 1 CAGAATTCTATTAATATACGCTACTATACACTAATTTCATTTATTTATGAGGGGTGAGTT 60 Query 60 GATTCATTGATTCTTGGTTCTTTGGGGGTCTAGGTTTACTTAGAGAAGTGACTTATGTCT 119 |||||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||| Sbjct 61 GATTCATTAATTCTTGGATCTTTGGGTGTCTAGGTTTACTTAGAGAAGTGACTTGTGTCT 120 Query 120 TTAATGGGTTTGTTGAAAGATGTGTCAGTGACATGAAGAAGACGAACAACAACAATAAGC 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTAATGGGTTTGTTGAAAGATGTGTCAGTGACATGAAGAAGACGAACAACAACAATAAGC 180 Query 180 TTGCAATAAATGTTTTGCCTTCATCTTCATCACACATCAACACCACACAAAAAGTGTTTT 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTGCAATAAATGTTTTGCCTTCATCTTCATCACACATCAACACCACACAAAAAGTGTTTT 240 Query 240 ACATACTCTTCAGAAAAGTCAATACCGTGAAAAAGAGGAGACTCATCCTCACTCCTCAGC 299 ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| Sbjct 241 TCATACTCTTCAGAAAAGTCAATACCGTGAAAAAGAGGAGACTC--C-TGACTCCTCAGT 297 Query 300 CATTACAATGtcttcttcttcttgtt--t-gatcttcattttcattctcttactctgtct 356 |||| |||||||||||||||||| || | | |||||| |||||||||||||||| |||| Sbjct 298 CATTGCAATGTCTTCTTCTTCTTCTTGCTTGTTCTTCACTTTCATTCTCTTACTCAGTCT 357 Query 357 cttctcctcctctgcttctcCACCAAATTCGACATCTGAAACTGAGACTCTCCGGCCTCA 416 ||||||||||| |||||||||| | ||||||||||| ||||||| | ||||||||||||| Sbjct 358 CTTCTCCTCCTATGCTTCTCCATCGAATTCGACATCCGAAACTGTGCCTCTCCGGCCTCA 417 Query 417 AAAAGAGATTCAAAAGCTGAAACTCATCAGAAAACAACTCCAAAAGATCAATAAACCAGC 476 || ||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 418 AAGAGAGATTCAGAAGATGAAACTCATCAGAAAACAACTCCAAAAGATTAATAAACCAGC 477 Query 477 CATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTGTTCCATCTCATAACCA 536 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 478 CATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTGTTCCATCTCATCACCA 537 Query 537 GCCTGCTTTTGATCATCCTTTGTTACAAGGACAAAGACCAATGGATCCACCGGAGATGCC 596 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 538 GCCTGCTTTTGATCATCCTTTGTTACAGGGACAACGACCAATGGATCCACCGGAGATGCC 597 Query 597 CATAGGGTATAGCCAAGAAAACGAATCCTATGAAAATTTTCAGCTTTGGAGCTTGTCCGG 656 |||||||||||||||||||| |||||| | |||||||| ||||||||||| || | ||| Sbjct 598 TATAGGGTATAGCCAAGAAAATGAATCCCACGAAAATTTCCAGCTTTGGAGTTTATACGG 657 Query 657 TGAGTCTTGCCCGGAAGGTACGATTCCGATCAGAAGAACGACTGAACAAGACATGTTAAG 716 ||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| Sbjct 658 TGAGTCTTGCCCGGAAGGTACGATTCCGATCAGAAGAACAACGGAGCAAGACATGTTAAG 717 Query 717 AGCAAGTTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGCGTGAGAAGGGATTCGAGCAG 776 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 AGCAAATTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGCGTGAGAAGGGATTCGAGCAG 777 Query 777 TAATGGCCACGAGCATGCGGTTGGATACGTATCGGGAAGTCAATATTACGGAGCAAAAGC 836 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 778 TAATGGCCACGAGCATGCGGTTGGATACGTATCGGGAAGTCAATACTACGGAGCAAAAGC 837 Query 837 AAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACGAGTTTAGTCTATCTCAGAT 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 AAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACGAGTTTAGTCTATCTCAGAT 897 Query 897 TTGGGTCATCGCCGGTTCTTTCGCCGACGATCTTAATACCATCGAAGCTGGTTGGCAGAT 956 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 898 TTGGATCATCGCCGGTTCTTTCGCCGGCGATCTTAATACCATCGAAGCTGGTTGGCAGAT 957 Query 957 TAGTCCGGAGCTATACGGAGACACTAATCCAAGATTCTTCACCTATTGGACGTCGGATGC 1016 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 958 TAGCCCGGAGCTATACGGAGACACTAACCCAAGATTCTTCACCTATTGGACGTCGGATGC 1017 Query 1017 CTACCAAGCAACAGGATGCTATAACTTACTATGTTCTGGGTTTGTTCAAACAAACAATCG 1076 |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 1018 TTACCAAGCAACAGGATGCTATAACCTACTATGTTCTGGTTTTGTTCAAACAAACAATCG 1077 Query 1077 AATCGCAATCGGAGCGGCAATTTCACCCGTTTCGTCGTATAAAGGTGGACAATTCGATAT 1136 ||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1078 AATCGCAATTGGAGCGGCGATTTCGCCCGTTTCGTCGTATAAAGGTGGACAATTCGATAT 1137 Query 1137 AAGTTTATTGATATGGAAGGATCCAAAGCATGGACACTGGTGGCTCCAATTCGGGTCGGG 1196 ||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 1138 AAGCTTATTGATATGGAAGGACCCAAAGCATGGACATTGGTGGCTCCAATTCGGGTCGGG 1197 Query 1197 TACACTAGTCGGATATTGGCCCGTATCTTTGTTCACACACCTGAGAGAGCATGGAAACAT 1256 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 1198 TACACTAGTCGGATATTGGCCCGTATCTCTGTTCACACACCTGAGGGAGCATGGAAACAT 1257 Query 1257 GGTCCAGTTCGGTGGCGAGATAGTGAACACACGACCTGGTGGTTCACATACTTCGACTCA 1316 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1258 GGTCCAGTTTGGTGGCGAGATCGTGAACACACGACCTGGTGGTTCACATACTTCGACTCA 1317 Query 1317 AATGGGCAGTGGCCATTTTGCCGGTGAAGGTTTTGGAAAAGCGTCTTACTTTAGGAATCT 1376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 AATGGGCAGTGGCCATTTTGCCGGTGAAGGTTTTGGAAAAGCGTCTTACTTTAGGAATCT 1377 Query 1377 ACAAATGGTAGATTGGGACAATACTCTTATTCCGATATCTAATCTTAAAGTTCTCGCGGA 1436 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1378 TCAAATGGTAGATTGGGACAATACTCTTATTCCGATATCTAATCTTAAAGTTCTTGCAGA 1437 Query 1437 TCATCCGAATTGTTATGACATAAGAGGAGGAGTAAACCGTGTTTGGGGTAACTATTTTTA 1496 |||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| Sbjct 1438 TCATCCTAATTGTTATGATATAAGAGGAGGGGTAAACCGTGTTTGGGGTAACTTTTTTTA 1497 Query 1497 CTACGGAGGACCGGGTAAAAACTCGAAATGTCCATAGAGAAAAGCaaaaaaaaGTGGATA 1556 |||||||||||||||||||||||||||||||||||||||||| |||| || ||||||| Sbjct 1498 TTACGGAGGACCGGGTAAAAACTCGAAATGTCCATAGAGAAAA--AAAAGAA-GTGGATA 1554 Query 1557 GTGTTGTTCTGAGCTTACGTAAATGAGATTTTTTGGGATTTAGGGCTCAGGACAATGATG 1616 |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 1555 GTGTTGTTTTGAGCTTAAGTAAATGAGATTTTTTGGGATTTAGAGCTCAGGACAATGATG 1614 Query 1617 AAAGATCCATAG 1628 |||||||||||| Sbjct 1615 AAAGATCCATAG 1626 > AT1G70550.1 | Symbols: | Protein of Unknown Function (DUF239) | chr1:26597313-26600219 FORWARD LENGTH=1926 Length=1926 Score = 1003 bits (543), Expect = 0.0 Identities = 968/1170 (83%), Gaps = 42/1170 (4%) Strand=Plus/Plus Query 403 ACTCTCCGGCCTCAAAAAGAGATTCAAAAGCTGAA-ACTCATCAGAAAACAACTCCA-AA 460 ||||||||||| ||| ||||| | || ||||| || ||| || ||| || ||||| | || Sbjct 465 ACTCTCCGGCCGCAAGAAGAGCTCCAGAAGCT-AACACTGATTAGACAAGAACTCGACAA 523 Query 461 AGATCAATAAACCAGCCATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTG 520 | ||||| || || || | || || ||||| |||||||||||||||| |||||||||| Sbjct 524 A-ATCAACAAGCCGGCTGTGAAAACTATTCAGAGCTCAGATGGAGATAAAATAGATTGTG 582 Query 521 TTCCATCTCATAACCAGCCTGCTTTTGATCATCCTTTGTTACAAGGACAAAGACCAATGG 580 || || ||||| | || || ||||| ||||||||| | ||||||||||||| |||| ||| Sbjct 583 TTTCAACTCATCAGCAACCAGCTTTCGATCATCCTCTCTTACAAGGACAAAAACCATTGG 642 Query 581 ATCCACCGGAGATGCCCATAGGGTATAGCCAAGAAAACGAATCCTATGAAAATTTTCAGC 640 |||| || ||||| || | ||| || ||| |||| | | ||| |||||||| | |||| Sbjct 643 ATCCGCCTGAGATACCAAAAGGATACAGCGAAGATGATGGATCATATGAAAACTCCCAGC 702 Query 641 TTTGGAGCTTGTCCGGTGAGTCTTGCCCGGAAGGTACGATTCCGATCAGAAGAACGACTG 700 ||||||| || |||||||||||||| |||||||||||||||||||| |||||||| || | Sbjct 703 TTTGGAGTTTATCCGGTGAGTCTTGTCCGGAAGGTACGATTCCGATAAGAAGAACAACGG 762 Query 701 AACAAGACATGTTAAGAGCAAGTTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGCGTGA 760 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 763 AACAAGACATGTTAAGAGCAAGTTCTGTCCAAAGATTTGGTCGGAAAATCAGGCGCGTGA 822 Query 761 -GAAGGGATTCGAGCAG-TAATGGCCACGAGCATGCGGTTGGATACGTATC-GGGAAGTC 817 || | ||||| | || ||| || ||||| |||||||| ||||| ||| | |||| | | Sbjct 823 AGA-GAGATTCCA-CAAATAACGGACACGAACATGCGGTGGGATATGTAACCGGGA-GAC 879 Query 818 AATATTACGGAGCAAAAGCAAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACG 877 |||||||||| |||||||||||||| ||||||||| |||||||||| | |||||||||| Sbjct 880 AATATTACGGGGCAAAAGCAAGTATTAACGTGTGGTCGCCACGTGTTACGAGCCAATACG 939 Query 878 AGTTTAGTCTATCTCAGATTTGGGTCATCGCCGGTTCTTTCGC-CGACGATCTTAATACC 936 | |||||||| |||||||||||||| || |||||||| ||| | | |||||||||||||| Sbjct 940 AATTTAGTCTTTCTCAGATTTGGGTTATTGCCGGTTCGTTCACAC-ACGATCTTAATACC 998 Query 937 ATCGAAGCTGGTTGGCAGATTAGTCCGGAGCTATACGGAGACACTAATCCAAGATTCTTC 996 || ||||| |||||||| ||||| |||||| | ||||| || ||| | ||||||||||| Sbjct 999 ATTGAAGCCGGTTGGCAAATTAGCCCGGAGTTGTACGGCGATACTTACCCAAGATTCTTT 1058 Query 997 ACCTATTGGACGTCGGATGCCTACC-AAGCAACAGGATGCTATAACTTACTATGTTCTGG 1055 |||||||||||||| ||||| || | || |||| || ||||| || || |||||||| || Sbjct 1059 ACCTATTGGACGTCCGATGCATATCGAA-CAACGGGTTGCTACAATTTGCTATGTTCCGG 1117 Query 1056 GTTT-GTTCAAACAAACAATCGAATCGCAATCGGAGCGGCAATTTCACCC-GTTTCGTCG 1113 ||| |||||||| ||| ||||||||| || ||||| || ||||| || | | | ||| Sbjct 1118 -TTTCGTTCAAACCAACCGTCGAATCGCGATAGGAGCTGCGATTTCTCCTAGAT-CTTCG 1175 Query 1114 TATAAAGGTGGACAATTCGATATAAGTTTATTGATATGGAAGGATCCAAAGCATGGACAC 1173 |||||||||||||||||||||||||| ||||| || ||||||||||| ||||| || ||| Sbjct 1176 TATAAAGGTGGACAATTCGATATAAGCTTATTAATTTGGAAGGATCCGAAGCACGGTCAC 1235 Query 1174 TGGTGGCTCCAATTCGGGTCGGGTACACTAGTCGGATATTGGCC--CGTATCTTTGTTCA 1231 |||||||| ||||||||||| ||| || ||||||| |||||||| ||| | ||| |||| Sbjct 1236 TGGTGGCTACAATTCGGGTCAGGTGCATTAGTCGGTTATTGGCCAGCGT-T-TTTATTCA 1293 Query 1232 CACACCTGAGAG-AGCATGGAAACATGGTCCAGTTCGGTGGCGAGATAGTGAACACAC-G 1289 | || || | || | ||||||| ||||||||| ||||| |||||||| ||||||| || | Sbjct 1294 CGCATCTAA-AGCAACATGGAAGCATGGTCCAATTCGGGGGCGAGATTGTGAACA-ACCG 1351 Query 1290 ACCTGGTGGTTCACATACTTCGACTCAAATGGGCAGTGGCCATTTTGCCGGTGAAGGTTT 1349 ||| || |||||||| ||| ||||||||||||| ||||| |||||||||||||||||||| Sbjct 1352 ACCCGGCGGTTCACACACTACGACTCAAATGGGTAGTGGACATTTTGCCGGTGAAGGTTT 1411 Query 1350 TGGAAAAGCGTCTTACTTTA-GGAATCTACAAATGGTAGATTGGGACAATACTCTTATTC 1408 ||| ||||| ||||| ||| ||||||| ||||| || || |||||||| |||||||| | Sbjct 1412 TGGTAAAGCATCTTA-TTTCCGGAATCTCCAAATTGTTGACTGGGACAACACTCTTATAC 1470 Query 1409 C-GATATCTAATCTTAAAG-TTCTCGCGGATCATCCGAATTGTTATGACATAAGAGGAGG 1466 | | | || ||||| |||| ||||||| || ||||| ||||||||||| |||||||| || Sbjct 1471 CCGCT-TCGAATCT-AAAGATTCTCGCAGACCATCCCAATTGTTATGATATAAGAGGTGG 1528 Query 1467 -A-GTAAACCGTGTTTGGGGTAACTATTTTTACTACGGAGGACCGGGTAAAAACTCGAAA 1524 | | || | |||| |||||||||||||||||||| ||||| || || |||||| | | | Sbjct 1529 GACG-AATC-GTGTGTGGGGTAACTATTTTTACTATGGAGGTCCAGGAAAAAACCCTAGA 1586 Query 1525 TGTCCATAGA-GAA--AAGCaaaa-aaaaG 1550 ||||||| || ||| ||| |||| ||||| Sbjct 1587 TGTCCAT-GAAGAATCAAG-AAAACAAAAG 1614 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80421273090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5