BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472593
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23340.1 | Symbols: | Protein of Unknown Function (DUF239) ... 2562 0.0
AT1G70550.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1003 0.0
> AT1G23340.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr1:8283896-8286832 REVERSE LENGTH=1796
Length=1796
Score = 2562 bits (1387), Expect = 0.0
Identities = 1552/1632 (95%), Gaps = 10/1632 (1%)
Strand=Plus/Plus
Query 1 CAGAATTCTATCAATTTACGCTACTATACACTAA-TTCATTTATTTTTGAGGGGTGAGTT 59
||||||||||| ||| |||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1 CAGAATTCTATTAATATACGCTACTATACACTAATTTCATTTATTTATGAGGGGTGAGTT 60
Query 60 GATTCATTGATTCTTGGTTCTTTGGGGGTCTAGGTTTACTTAGAGAAGTGACTTATGTCT 119
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 61 GATTCATTAATTCTTGGATCTTTGGGTGTCTAGGTTTACTTAGAGAAGTGACTTGTGTCT 120
Query 120 TTAATGGGTTTGTTGAAAGATGTGTCAGTGACATGAAGAAGACGAACAACAACAATAAGC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTAATGGGTTTGTTGAAAGATGTGTCAGTGACATGAAGAAGACGAACAACAACAATAAGC 180
Query 180 TTGCAATAAATGTTTTGCCTTCATCTTCATCACACATCAACACCACACAAAAAGTGTTTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGCAATAAATGTTTTGCCTTCATCTTCATCACACATCAACACCACACAAAAAGTGTTTT 240
Query 240 ACATACTCTTCAGAAAAGTCAATACCGTGAAAAAGAGGAGACTCATCCTCACTCCTCAGC 299
||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 241 TCATACTCTTCAGAAAAGTCAATACCGTGAAAAAGAGGAGACTC--C-TGACTCCTCAGT 297
Query 300 CATTACAATGtcttcttcttcttgtt--t-gatcttcattttcattctcttactctgtct 356
|||| |||||||||||||||||| || | | |||||| |||||||||||||||| ||||
Sbjct 298 CATTGCAATGTCTTCTTCTTCTTCTTGCTTGTTCTTCACTTTCATTCTCTTACTCAGTCT 357
Query 357 cttctcctcctctgcttctcCACCAAATTCGACATCTGAAACTGAGACTCTCCGGCCTCA 416
||||||||||| |||||||||| | ||||||||||| ||||||| | |||||||||||||
Sbjct 358 CTTCTCCTCCTATGCTTCTCCATCGAATTCGACATCCGAAACTGTGCCTCTCCGGCCTCA 417
Query 417 AAAAGAGATTCAAAAGCTGAAACTCATCAGAAAACAACTCCAAAAGATCAATAAACCAGC 476
|| ||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 AAGAGAGATTCAGAAGATGAAACTCATCAGAAAACAACTCCAAAAGATTAATAAACCAGC 477
Query 477 CATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTGTTCCATCTCATAACCA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 CATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTGTTCCATCTCATCACCA 537
Query 537 GCCTGCTTTTGATCATCCTTTGTTACAAGGACAAAGACCAATGGATCCACCGGAGATGCC 596
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 538 GCCTGCTTTTGATCATCCTTTGTTACAGGGACAACGACCAATGGATCCACCGGAGATGCC 597
Query 597 CATAGGGTATAGCCAAGAAAACGAATCCTATGAAAATTTTCAGCTTTGGAGCTTGTCCGG 656
|||||||||||||||||||| |||||| | |||||||| ||||||||||| || | |||
Sbjct 598 TATAGGGTATAGCCAAGAAAATGAATCCCACGAAAATTTCCAGCTTTGGAGTTTATACGG 657
Query 657 TGAGTCTTGCCCGGAAGGTACGATTCCGATCAGAAGAACGACTGAACAAGACATGTTAAG 716
||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 658 TGAGTCTTGCCCGGAAGGTACGATTCCGATCAGAAGAACAACGGAGCAAGACATGTTAAG 717
Query 717 AGCAAGTTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGCGTGAGAAGGGATTCGAGCAG 776
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGCAAATTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGCGTGAGAAGGGATTCGAGCAG 777
Query 777 TAATGGCCACGAGCATGCGGTTGGATACGTATCGGGAAGTCAATATTACGGAGCAAAAGC 836
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 778 TAATGGCCACGAGCATGCGGTTGGATACGTATCGGGAAGTCAATACTACGGAGCAAAAGC 837
Query 837 AAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACGAGTTTAGTCTATCTCAGAT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACGAGTTTAGTCTATCTCAGAT 897
Query 897 TTGGGTCATCGCCGGTTCTTTCGCCGACGATCTTAATACCATCGAAGCTGGTTGGCAGAT 956
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 TTGGATCATCGCCGGTTCTTTCGCCGGCGATCTTAATACCATCGAAGCTGGTTGGCAGAT 957
Query 957 TAGTCCGGAGCTATACGGAGACACTAATCCAAGATTCTTCACCTATTGGACGTCGGATGC 1016
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 958 TAGCCCGGAGCTATACGGAGACACTAACCCAAGATTCTTCACCTATTGGACGTCGGATGC 1017
Query 1017 CTACCAAGCAACAGGATGCTATAACTTACTATGTTCTGGGTTTGTTCAAACAAACAATCG 1076
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1018 TTACCAAGCAACAGGATGCTATAACCTACTATGTTCTGGTTTTGTTCAAACAAACAATCG 1077
Query 1077 AATCGCAATCGGAGCGGCAATTTCACCCGTTTCGTCGTATAAAGGTGGACAATTCGATAT 1136
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1078 AATCGCAATTGGAGCGGCGATTTCGCCCGTTTCGTCGTATAAAGGTGGACAATTCGATAT 1137
Query 1137 AAGTTTATTGATATGGAAGGATCCAAAGCATGGACACTGGTGGCTCCAATTCGGGTCGGG 1196
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1138 AAGCTTATTGATATGGAAGGACCCAAAGCATGGACATTGGTGGCTCCAATTCGGGTCGGG 1197
Query 1197 TACACTAGTCGGATATTGGCCCGTATCTTTGTTCACACACCTGAGAGAGCATGGAAACAT 1256
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1198 TACACTAGTCGGATATTGGCCCGTATCTCTGTTCACACACCTGAGGGAGCATGGAAACAT 1257
Query 1257 GGTCCAGTTCGGTGGCGAGATAGTGAACACACGACCTGGTGGTTCACATACTTCGACTCA 1316
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GGTCCAGTTTGGTGGCGAGATCGTGAACACACGACCTGGTGGTTCACATACTTCGACTCA 1317
Query 1317 AATGGGCAGTGGCCATTTTGCCGGTGAAGGTTTTGGAAAAGCGTCTTACTTTAGGAATCT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AATGGGCAGTGGCCATTTTGCCGGTGAAGGTTTTGGAAAAGCGTCTTACTTTAGGAATCT 1377
Query 1377 ACAAATGGTAGATTGGGACAATACTCTTATTCCGATATCTAATCTTAAAGTTCTCGCGGA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1378 TCAAATGGTAGATTGGGACAATACTCTTATTCCGATATCTAATCTTAAAGTTCTTGCAGA 1437
Query 1437 TCATCCGAATTGTTATGACATAAGAGGAGGAGTAAACCGTGTTTGGGGTAACTATTTTTA 1496
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1438 TCATCCTAATTGTTATGATATAAGAGGAGGGGTAAACCGTGTTTGGGGTAACTTTTTTTA 1497
Query 1497 CTACGGAGGACCGGGTAAAAACTCGAAATGTCCATAGAGAAAAGCaaaaaaaaGTGGATA 1556
|||||||||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 1498 TTACGGAGGACCGGGTAAAAACTCGAAATGTCCATAGAGAAAA--AAAAGAA-GTGGATA 1554
Query 1557 GTGTTGTTCTGAGCTTACGTAAATGAGATTTTTTGGGATTTAGGGCTCAGGACAATGATG 1616
|||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1555 GTGTTGTTTTGAGCTTAAGTAAATGAGATTTTTTGGGATTTAGAGCTCAGGACAATGATG 1614
Query 1617 AAAGATCCATAG 1628
||||||||||||
Sbjct 1615 AAAGATCCATAG 1626
> AT1G70550.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr1:26597313-26600219 FORWARD LENGTH=1926
Length=1926
Score = 1003 bits (543), Expect = 0.0
Identities = 968/1170 (83%), Gaps = 42/1170 (4%)
Strand=Plus/Plus
Query 403 ACTCTCCGGCCTCAAAAAGAGATTCAAAAGCTGAA-ACTCATCAGAAAACAACTCCA-AA 460
||||||||||| ||| ||||| | || ||||| || ||| || ||| || ||||| | ||
Sbjct 465 ACTCTCCGGCCGCAAGAAGAGCTCCAGAAGCT-AACACTGATTAGACAAGAACTCGACAA 523
Query 461 AGATCAATAAACCAGCCATCAAGACCATTCATAGCTCAGATGGAGATACGATAGATTGTG 520
| ||||| || || || | || || ||||| |||||||||||||||| ||||||||||
Sbjct 524 A-ATCAACAAGCCGGCTGTGAAAACTATTCAGAGCTCAGATGGAGATAAAATAGATTGTG 582
Query 521 TTCCATCTCATAACCAGCCTGCTTTTGATCATCCTTTGTTACAAGGACAAAGACCAATGG 580
|| || ||||| | || || ||||| ||||||||| | ||||||||||||| |||| |||
Sbjct 583 TTTCAACTCATCAGCAACCAGCTTTCGATCATCCTCTCTTACAAGGACAAAAACCATTGG 642
Query 581 ATCCACCGGAGATGCCCATAGGGTATAGCCAAGAAAACGAATCCTATGAAAATTTTCAGC 640
|||| || ||||| || | ||| || ||| |||| | | ||| |||||||| | ||||
Sbjct 643 ATCCGCCTGAGATACCAAAAGGATACAGCGAAGATGATGGATCATATGAAAACTCCCAGC 702
Query 641 TTTGGAGCTTGTCCGGTGAGTCTTGCCCGGAAGGTACGATTCCGATCAGAAGAACGACTG 700
||||||| || |||||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 703 TTTGGAGTTTATCCGGTGAGTCTTGTCCGGAAGGTACGATTCCGATAAGAAGAACAACGG 762
Query 701 AACAAGACATGTTAAGAGCAAGTTCTGTCCGTAGATTTGGTCGGAAAATCAGGCGCGTGA 760
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 763 AACAAGACATGTTAAGAGCAAGTTCTGTCCAAAGATTTGGTCGGAAAATCAGGCGCGTGA 822
Query 761 -GAAGGGATTCGAGCAG-TAATGGCCACGAGCATGCGGTTGGATACGTATC-GGGAAGTC 817
|| | ||||| | || ||| || ||||| |||||||| ||||| ||| | |||| | |
Sbjct 823 AGA-GAGATTCCA-CAAATAACGGACACGAACATGCGGTGGGATATGTAACCGGGA-GAC 879
Query 818 AATATTACGGAGCAAAAGCAAGTATAAACGTGTGGACGCCACGTGTCATAAGCCAATACG 877
|||||||||| |||||||||||||| ||||||||| |||||||||| | ||||||||||
Sbjct 880 AATATTACGGGGCAAAAGCAAGTATTAACGTGTGGTCGCCACGTGTTACGAGCCAATACG 939
Query 878 AGTTTAGTCTATCTCAGATTTGGGTCATCGCCGGTTCTTTCGC-CGACGATCTTAATACC 936
| |||||||| |||||||||||||| || |||||||| ||| | | ||||||||||||||
Sbjct 940 AATTTAGTCTTTCTCAGATTTGGGTTATTGCCGGTTCGTTCACAC-ACGATCTTAATACC 998
Query 937 ATCGAAGCTGGTTGGCAGATTAGTCCGGAGCTATACGGAGACACTAATCCAAGATTCTTC 996
|| ||||| |||||||| ||||| |||||| | ||||| || ||| | |||||||||||
Sbjct 999 ATTGAAGCCGGTTGGCAAATTAGCCCGGAGTTGTACGGCGATACTTACCCAAGATTCTTT 1058
Query 997 ACCTATTGGACGTCGGATGCCTACC-AAGCAACAGGATGCTATAACTTACTATGTTCTGG 1055
|||||||||||||| ||||| || | || |||| || ||||| || || |||||||| ||
Sbjct 1059 ACCTATTGGACGTCCGATGCATATCGAA-CAACGGGTTGCTACAATTTGCTATGTTCCGG 1117
Query 1056 GTTT-GTTCAAACAAACAATCGAATCGCAATCGGAGCGGCAATTTCACCC-GTTTCGTCG 1113
||| |||||||| ||| ||||||||| || ||||| || ||||| || | | | |||
Sbjct 1118 -TTTCGTTCAAACCAACCGTCGAATCGCGATAGGAGCTGCGATTTCTCCTAGAT-CTTCG 1175
Query 1114 TATAAAGGTGGACAATTCGATATAAGTTTATTGATATGGAAGGATCCAAAGCATGGACAC 1173
|||||||||||||||||||||||||| ||||| || ||||||||||| ||||| || |||
Sbjct 1176 TATAAAGGTGGACAATTCGATATAAGCTTATTAATTTGGAAGGATCCGAAGCACGGTCAC 1235
Query 1174 TGGTGGCTCCAATTCGGGTCGGGTACACTAGTCGGATATTGGCC--CGTATCTTTGTTCA 1231
|||||||| ||||||||||| ||| || ||||||| |||||||| ||| | ||| ||||
Sbjct 1236 TGGTGGCTACAATTCGGGTCAGGTGCATTAGTCGGTTATTGGCCAGCGT-T-TTTATTCA 1293
Query 1232 CACACCTGAGAG-AGCATGGAAACATGGTCCAGTTCGGTGGCGAGATAGTGAACACAC-G 1289
| || || | || | ||||||| ||||||||| ||||| |||||||| ||||||| || |
Sbjct 1294 CGCATCTAA-AGCAACATGGAAGCATGGTCCAATTCGGGGGCGAGATTGTGAACA-ACCG 1351
Query 1290 ACCTGGTGGTTCACATACTTCGACTCAAATGGGCAGTGGCCATTTTGCCGGTGAAGGTTT 1349
||| || |||||||| ||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1352 ACCCGGCGGTTCACACACTACGACTCAAATGGGTAGTGGACATTTTGCCGGTGAAGGTTT 1411
Query 1350 TGGAAAAGCGTCTTACTTTA-GGAATCTACAAATGGTAGATTGGGACAATACTCTTATTC 1408
||| ||||| ||||| ||| ||||||| ||||| || || |||||||| |||||||| |
Sbjct 1412 TGGTAAAGCATCTTA-TTTCCGGAATCTCCAAATTGTTGACTGGGACAACACTCTTATAC 1470
Query 1409 C-GATATCTAATCTTAAAG-TTCTCGCGGATCATCCGAATTGTTATGACATAAGAGGAGG 1466
| | | || ||||| |||| ||||||| || ||||| ||||||||||| |||||||| ||
Sbjct 1471 CCGCT-TCGAATCT-AAAGATTCTCGCAGACCATCCCAATTGTTATGATATAAGAGGTGG 1528
Query 1467 -A-GTAAACCGTGTTTGGGGTAACTATTTTTACTACGGAGGACCGGGTAAAAACTCGAAA 1524
| | || | |||| |||||||||||||||||||| ||||| || || |||||| | | |
Sbjct 1529 GACG-AATC-GTGTGTGGGGTAACTATTTTTACTATGGAGGTCCAGGAAAAAACCCTAGA 1586
Query 1525 TGTCCATAGA-GAA--AAGCaaaa-aaaaG 1550
||||||| || ||| ||| |||| |||||
Sbjct 1587 TGTCCAT-GAAGAATCAAG-AAAACAAAAG 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5