BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472595

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23350.1 | Symbols:  | Plant invertase/pectin methylesterase...   715    0.0  


> AT1G23350.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr1:8293595-8294264 REVERSE 
LENGTH=670
Length=670

 Score =  715 bits (387),  Expect = 0.0
 Identities = 494/544 (91%), Gaps = 14/544 (3%)
 Strand=Plus/Plus

Query  1    TATATACACACAATATATATACGTTTCCGTGTATATACCATACACACAATGTCTATCAAT  60
            |||||| ||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct  42   TATATATACACAATATATATACGTTTCCGTGTATCTATCATACACACGATGTCTATCAAT  101

Query  61   CCCTATATGACCATCTTCCT-CT--TCGCCGCTACCTCAAGCCAAAGCATGGCAGCGTTG  117
            || ||| |||| |||||||| ||  |||||||||||||||| |    ||    |||||||
Sbjct  102  CCGTATGTGACAATCTTCCTCCTCCTCGCCGCTACCTCAAG-C----CA----AGCGTTG  152

Query  118  AGTCTTTCTCTCGCTGACCCCTGCACGGTCTCGGATTTTCCGGCATTGTGCAGAGGTACC  177
            ||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||
Sbjct  153  AGTATTTCTCTAGCTGACCCCTGCACGGTGTCGGATTTTCCTGCATTGTGCAGAAGTACC  212

Query  178  ATTAAGGGTCAAACTAATGTGAACGCAGCGACGGATGTGGCCATTAGAGAGCTGATGAAA  237
            ||||||||||||||||||||||| |||||||||||||||||||| | |||| ||||||| 
Sbjct  213  ATTAAGGGTCAAACTAATGTGAATGCAGCGACGGATGTGGCCATAAAAGAGTTGATGAAG  272

Query  238  CGGACGAGGCAAGCCAAAG-AAATCGCCGAGAAAGAGCTGAAACGCGATGGAGGAGTCGC  296
            ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct  273  CGGACGAGGCAAGCC-AAGAAAATCGCGGAGAAAGAGCTGAAACGCGATGGAGGAGTCGC  331

Query  297  GACTTGTTTGTCCAACTTCAATAGCGCGTTTGACAATTTGGACAAGGCTCTTACCAACAT  356
            ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct  332  GACTTGTTTGTCCAACTTCAATAGCGCGTTTGATAATTTGGAAAAGGCTCTTACAAACAT  391

Query  357  TAAGGAAAATGATGGTTTTAGCCTTAACATTAACCTTAGTGCCGCGTTGACGGATTACGA  416
            ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct  392  TAAGGAAAATGATGGTTTTAGCCTTAACATTAACCTTAGCGCCGCCTTGACGGATTACGA  451

Query  417  TACTTGCAGCGACGCGATGAAGGAAACTCGGGAGATCAACGTCATTTATAAATCTGCTGG  476
            ||||||||||||| ||||||||||||||  |||| ||||||||||||||||||| || ||
Sbjct  452  TACTTGCAGCGACTCGATGAAGGAAACTAAGGAGGTCAACGTCATTTATAAATCCGCCGG  511

Query  477  CGTTTTGTATAAAATGGCTGATAATTGCTTGGCGCTCTCAACCCTCGTTAAACATTGatt  536
             ||||||||    ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  512  GGTTTTGTACCGTATGGCTGATAATTGCTTGGCGCTTTCAACTCTCGTTAAACATTGATT  571

Query  537  ttaa  540
            ||||
Sbjct  572  TTAA  575



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28281824761


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5