BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472598
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23360.1 | Symbols: MENG | S-adenosyl-L-methionine-dependent... 1404 0.0
> AT1G23360.1 | Symbols: MENG | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr1:8295185-8296919
REVERSE LENGTH=1048
Length=1048
Score = 1404 bits (760), Expect = 0.0
Identities = 926/1003 (92%), Gaps = 24/1003 (2%)
Strand=Plus/Plus
Query 1 ACGGCCAAAAAATGGCGGCTCTAGTACTTGGTATCGTCTCTCCGGTGACCTTCACCGGCA 60
||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||| |
Sbjct 16 ACGGCCAAAAAATGGCGGCTC---TACTCGGTATCGTCTCTCCTGTGACTTTCACCGGAA 72
Query 61 AGC-TCTGGCCGAATTCCCGATCGCGACGGAGAATGGTAGTCAAATGCTCGAACGAACGC 119
||| | || |||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 73 AGCACCCGG-TAAATTCCCGATCGCGACGGAGAACGGTAGTAAAATGCTCGAACGAACGC 131
Query 120 CGTATTCTCTTCAACCGCATTGCTCCAGTTTACGATAATTTGAATGATCTCTTAAGCTTA 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 CGGATTCTCTTCAACCGCATTGCTCCAGTTTACGATAATTTGAATGATCTCTTAAGCTTA 191
Query 180 GGCCAACATCGAATTTGGAAGAACATGACTGTATCATGGAGCGGAGCAAGAACAGGAGAT 239
||||| |||||||||||||| |||||| |||| |||||||| ||||||| || |||||||
Sbjct 192 GGCCAGCATCGAATTTGGAAAAACATGGCTGTCTCATGGAGTGGAGCAAAAAAAGGAGAT 251
Query 240 AATGTTCTTGATTTGTGTTGTGGAAGTGGTGATTTAGCGTTTCTTTTGTCTGAGAAAGTT 299
| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 252 TACGTTCTTGATTTGTGTTGTGGAAGTGGTGATTTAGCGTTTCTCTTATCTGAGAAAGTT 311
Query 300 GGTTCAACCGGCAAGGTGATGGGTTTGGATTTCTCATCTGAACAACTAGCTGTTGCAGCA 359
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 312 GGTTCAACTGGCAAGGTGATGGGCTTGGATTTCTCATCTGAACAACTAGCTGTTGCAGCA 371
Query 360 TCTAGACAGAATCTTAAAGCAAGGTCTTGTTACAAGTGTATAGAGTGGATTGAAGGTGAT 419
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 ACTAGACAGAGTCTTAAAGCAAGGTCTTGTTACAAGTGTATAGAGTGGATTGAAGGTGAT 431
Query 420 GCTATTGATTTGCCATTTGATGATTGTGAATTCGATGCGATTACGATGGGTTATGGTCTT 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 432 GCTATTGATTTGCCATTTGATGATTGTGAATTCGATGCGGTTACGATGGGTTATGGTCTT 491
Query 480 AGAAACGTTGTTGATAGAGTTAGAGCTATGAAGGAGATGTATCGGGTTTTGAAACCAGGT 539
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CGAAACGTTGTTGATAGACTTAGAGCTATGAAGGAGATGTATCGGGTTTTGAAACCAGGT 551
Query 540 TCAAGGGTGTCCATACTTGATTTCAATAAGAGCAACCAATCTGTTACGACGTTTATGCAG 599
||||| || || ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 552 TCAAGAGTATCTATACTTGATTTCAATAAGAGCAACCAATCCGTTACTACGTTTATGCAG 611
Query 600 GATTGGATGATTGACAATGTAGTTGTCCCTGTGGCTACTGTTTATGGTCTTGCAAAGGAG 659
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 612 GGCTGGATGATTGACAATGTAGTTGTCCCTGTGGCTACTGTTTATGATCTTGCAAAGGAG 671
Query 660 TATGAATATCTGAAGTATTCAATCAATGGGTACCTAACAGGAGAAGAACTAGAGACTCTT 719
||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 672 TATGAATATCTCAAGTATTCAATCAATGGCTATCTAACAGGAGAAGAGCTAGAGACTCTT 731
Query 720 TCTCTAGAAGCTGGCTTCTCAAGTGCCCGCCATTATGAGATAAGCGGTGGTTTCATGGGG 779
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 732 GCTCTAGAAGCTGGCTTCTCAAGTGCCTGCCATTATGAGATAAGCGGTGGTTTCATGGGG 791
Query 780 AATTTGGTCGCTGA-GAGGTAAACGAATA-----TT---CTA---T---AC-C-AGATAG 822
|||||||||||| | |||||||| ||||| || ||| | || | |||||
Sbjct 792 AATTTGGTCGCT-ATGAGGTAAAGGAATAGCGCGTTTGACTACACTTCTACACCAGATAT 850
Query 823 ATTCACACTATCTTTATCTGGATTTTTATAAGAAAAGAGAAACGCTTTGCGTTAGGATGA 882
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 ATTGACACAATCTTTATCTGGATTTTTATAAGAAAAGAGAAACGCTTTGCGTTAGGATGA 910
Query 883 TGCAGATAATGTAGAGGAATTG-TTTTTATCTGTATAATTTACTTCTTTGATCAAACTGT 941
||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||
Sbjct 911 TGCAGATAATGTAGAGGAATTCATTTTTATCTGTATAACTTACTTGTTTGATCAAACTGT 970
Query 942 CAGTGTAATCTGTTTCTGATCCCAACGATGACCACGAATCTTT 984
|| |||||||||||||||||||||||||||| || ||||||||
Sbjct 971 CAATGTAATCTGTTTCTGATCCCAACGATGATCATGAATCTTT 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5