BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472599
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23380.2 | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like ho... 1975 0.0
AT1G70510.1 | Symbols: KNAT2, ATK1 | KNOTTED-like from Arabidop... 558 4e-158
> AT1G23380.2 | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like
homeobox gene 6 | chr1:8297291-8302600 REVERSE LENGTH=1306
Length=1306
Score = 1975 bits (1069), Expect = 0.0
Identities = 1232/1310 (94%), Gaps = 13/1310 (1%)
Strand=Plus/Plus
Query 1 GCGGTTTCATATTATTTTTCTTCATCGATTCTTGATTTTTC-AGAAGACAATTCAAG-AA 58
|||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 5 GCGGTTTCATATTATTCTTCTTCATCGATTCTTGATTTTGCAAGAAGACAATTCAAGAAA 64
Query 59 GACGATTTAGAAGACGGAGGAGTTCGCACCGGAGATCTTATACTAATGGATGGAATGTAC 118
| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 65 G-CGATTTAGAAGACGGAGGAGTTCTTACCGGAGATCTTATACTTATGGATGGAATGTAC 123
Query 119 AATTTCCATTCGGCCGGTGATTATTCAGATAAGTCGGTTCTGATGATGTCACCGGAGAGT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 AATTTCCATTCGGCCGGTGATTATTCAGATAAGTCGGTTCTGATGATGTCACCGGAGAGT 183
Query 179 CTCATGTTTCCTTCTGATTACCAAGCTTTACTATGTTCCTCCGCCGGTGAAAATCATGTC 238
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 184 CTCATGTTTCCTTCCGATTACCAAGCTTTGCTATGTTCCTCCGCCGGTGAAAATCGTGTC 243
Query 239 TCTGATGTTTTCGGATCCGACGAGCTACTCTCAGCAGCCGCCTCCGCTTTATCTTCGGAG 298
|||||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||
Sbjct 244 TCTGATGTTTTCGGATCCGACGAGCTACTCTCAGTAGCCGTCTCCGCTTTGTCGTCGGAG 303
Query 299 GCGGCTTCTATCGCTCCAGAGATCCGAAGAAATGATGATAACGTTTCTTTAAGTGTCATC 358
|||||||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||
Sbjct 304 GCGGCTTCGATCGCTCCGGAGATCCGAAGAAATGATGATAACGTTTCTCTAACTGTCATC 363
Query 359 AAGACC-AAAATCGCTTGTCATCCTTCGTATCCTCGCTTACTTCAGGCCTACATCGATTG 417
|| | | |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 364 AA-AGCTAAAATCGCTTGTCATCCTTCGTATCCTCGCTTACTTCAAGCTTACATCGATTG 422
Query 418 CCAAAAGAAACAGGTCGGAGCACCACCGGAGATAGCGTGTTTGCTGGAGGAGATTCAACG 477
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 423 CCAAAAGAAACAGGTCGGAGCACCACCGGAGATAGCGTGTTTACTAGAGGAGATTCAACG 482
Query 478 GGAGAGTGATGTGTATAAGCAAGAAGTTGTTCCTTCGTATTGCTTTGGAGCTGATCCTGA 537
|||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 483 GGAGAGTGATGTTTATAAGCAAGAGGTTGTTCCTTCTTCTTGCTTTGGAGCTGATCCTGA 542
Query 538 GCTTGATGAATTTATGGAAACGTACTGCGATATATTGGTGAAGTACAAATCGGATCTAGC 597
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 543 GCTTGATGAATTTATGGAAACGTACTGCGATATATTAGTGAAATACAAATCGGATCTAGC 602
Query 598 AAGACCGTTTGATGAGGCTACGTGTTTCTTGAACAAGATTGAGATGCAGCTACGGAACCT 657
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AAGACCGTTTGACGAGGCAACGTGTTTCTTGAACAAGATTGAGATGCAGCTACGGAACCT 662
Query 658 ATGTACTGGTGTCGAGTCTGCCAGAGGAGTTTCTGAGGATGGTGCAATATCATCTGACGA 717
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 663 ATGTACTGGTGTCGAGTCTGCCAGGGGAGTTTCTGAGGATGGTGTAATATCATCTGACGA 722
Query 718 GGAACTGAGTGGAGGTGATCATGAATTAGCAGAAGATGGGAAACAAAGATGCGAGGACCG 777
|||||||||||||||||||||||| ||||||| ||||||| ||||||||| || |||||
Sbjct 723 GGAACTGAGTGGAGGTGATCATGAGGTAGCAGAGGATGGGAGACAAAGATGTGAAGACCG 782
Query 778 TGATCTCAAGGATAGGTTGCTTCGCAAATTTGGAAGCCGTATAAGTTCTTTAAAGCTGGA 837
|| ||||| ||||||||||| |||||||||||||||||||| ||| |||||||||| ||
Sbjct 783 GGACCTCAAAGATAGGTTGCTACGCAAATTTGGAAGCCGTATTAGTACTTTAAAGCTTGA 842
Query 838 GTTTTCAAAGAAGAAAAAGAAAGGAAAGCTACCTAGAGAAGCAAGACAAGCTCTTCTTGA 897
||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 843 GTTCTCAAAGAAGAAGAAGAAAGGAAAGTTACCAAGAGAAGCAAGACAAGCTCTTCTTGA 902
Query 898 TTGGTGGAATCTCCATTATAAGTGGCCTTACCCTACTGAAGGTGATAAGATAGCTTTAGC 957
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 903 TTGGTGGAATCTCCATTATAAGTGGCCTTACCCTACTGAAGGAGATAAGATAGCATTAGC 962
Query 958 TGATGCAACGGGCTTAGACCAGAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACG 1017
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGATGCAACGGGGTTAGACCAAAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACG 1022
Query 1018 TCATTGGAAACCATCCGAGAATATGCCTTTCGCTATGATGGATGATTCTAGTGGATCATT 1077
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TCATTGGAAGCCATCAGAGAATATGCCTTTCGCTATGATGGATGATTCTAGTGGATCATT 1082
Query 1078 CTTTACCGAGGAATGAATTTATTTACCGTATTTATTTAACGTTGATaaaaaaaaaGATGG 1137
||||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||
Sbjct 1083 CTTTACCGAGGAATGAATTTATTTATGGTACTTATTTAACGTTGATTAAAA----GATGG 1138
Query 1138 ATGTATAATTCTGCCTTGCTTTGCCGACAAAGAAGaaaaaaaGAAAGAGAGAGTGAAGCA 1197
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1139 ATGTATAATTCTGCCTTGCTTTGCCGACAAAG--GAAAAAAAGAAAGAAAGAGTGAAGCA 1196
Query 1198 TGGGACGACACATGAA-TGAATATTACACTCACTCACATGTAGGAGAAGGAACAAGTCAA 1256
||| |||||||||||| || || |||||||||||||||||||| ||||||||||||||||
Sbjct 1197 TGG-ACGACACATGAAATGGATCTTACACTCACTCACATGTAGTAGAAGGAACAAGTCAA 1255
Query 1257 AATGCTTTGTAACTATTATTATCGGTGAATAAACATAACTTCTTTGGTCT 1306
||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1256 AATGCTTTGTAACTATTATTATCGGTGAATAAAAATAACCTCTTTTGTCT 1305
> AT1G70510.1 | Symbols: KNAT2, ATK1 | KNOTTED-like from Arabidopsis
thaliana 2 | chr1:26576486-26582431 FORWARD LENGTH=1368
Length=1368
Score = 558 bits (302), Expect = 4e-158
Identities = 627/780 (80%), Gaps = 38/780 (5%)
Strand=Plus/Plus
Query 331 TGATGATAACGTTTCT-T-TAAGTGTCATCAAGA-CCAAAATCGCTTGTCATCCTTCGTA 387
||| ||||| ||||| | | ||||||||||| | |||||||||||| |||||||| |||
Sbjct 329 TGAGGATAA--TTTCTCTCTTAGTGTCATCAA-ATCCAAAATCGCTTCTCATCCTTTGTA 385
Query 388 TCCTCGCTTACTTCAGGCCTACATCGATTGCCAAAAGAAACAGGTCGGAGCACC-ACCGG 446
|||||||||||| || ||||||||||||||| ||| |||| ||||| || | ||
Sbjct 386 TCCTCGCTTACTCCAAACCTACATCGATTGCC-----AAA-AGGTGGGAGCGCCTA-TGG 438
Query 447 AGATAGCGTGTTTGCTGGAGGAGATTCAACGGGAGAGTGATGTGTATAAGCA-AGAAGTT 505
| ||||||||| | |||| |||||||| || |||| ||||||| ||| | ||| |||
Sbjct 439 AAATAGCGTGTATATTGGAAGAGATTCAGCGAGAGAACCATGTGTACAAG-AGAGATGTT 497
Query 506 GTTCC-TTCGTATTGCTTTGGAGCTGATCCTGAGCTTGATGAATTTATGGAAACGTACTG 564
| ||| || | ||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 498 GCTCCATT-ATCTTGCTTTGGAGCTGATCCTGAGCTTGATGAATTCATGGAAACCTACTG 556
Query 565 CGATATATTGGTGAAGTACAAATCGGATCTAGCAAGACCGTTTGATGAGGCTACGTGTTT 624
||||||||||| || |||||| | ||||| || || ||||| || |||||||| |||
Sbjct 557 TGATATATTGGTTAAATACAAAACCGATCTTGCGAGGCCGTTCGACGAGGCTACAACTTT 616
Query 625 CTTGAACAAGATTGAGATGCAGCTACGGAACCTATGTACTGGTGTC-GAGTCTGCCAGAG 683
| | ||||||||||| |||||||| | |||| | || |||||| | | |||||| | ||
Sbjct 617 CATAAACAAGATTGAAATGCAGCTTCAGAACTTGTGCACTGGT-CCAGCGTCTGCTACAG 675
Query 684 GAGTTTCTGAGGATGGTGCAATATCATCTGACGAGGAACTGAGTGGAGGTGATCATGA-A 742
|||| || |||||||| | ||||||||||||||||||| ||| ||| |||| |
Sbjct 676 CTCTTTCAGATGATGGTGCGGTTTCATCTGACGAGGAACTGA---GAGAAGATGATGACA 732
Query 743 TTAGCAGAAGATG---GGAAACAAAGATGCGAGGACCGTGATCTCAAGGA-TAGGTTGCT 798
|||||| |||| | |||||||| || | ||||| ||||| ||||| | | | ||
Sbjct 733 -TAGCAGCGGATGACAGCCAACAAAGAAGCAATGACCGCGATCTGAAGGACCA-GCTACT 790
Query 799 TCGCAAATTTGGAAGCCGTATAAGTTC-TTTAAAGCTGGAGTTTTC-AAAGAAGAAAAAG 856
||||||||||| |||| ||| ||||| || ||| || ||||| || ||| ||||| |||
Sbjct 791 ACGCAAATTTGGTAGCCATATCAGTTCATTGAAA-CTCGAGTTCTCTAAA-AAGAAGAAG 848
Query 857 AAAGGAAAGCTACCTAGAGAAGCAAGACAAGCTCTT-CTTGATTGGTGGAATCTCCATTA 915
||||| |||||||| ||||||||||||||||| || || |||||||||||| | ||| |
Sbjct 849 AAAGGGAAGCTACCAAGAGAAGCAAGACAAGC-GTTGCTCGATTGGTGGAATGTTCATAA 907
Query 916 TAAGTGGCCTTACCCTACTGAAGGTGATAAGATAGCTTTAGCTGATGCAACGGGCTTAGA 975
||| |||||||||||||||||||| || || ||| || | ||||| | ||| || || ||
Sbjct 908 TAAATGGCCTTACCCTACTGAAGGCGACAAAATATCTCTGGCTGAAGAAACAGGTTTGGA 967
Query 976 CCAGAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACGTCATTGGAAACCATCCGA 1035
|| |||||||||||||||||||||||||||||||||||||| |||||||| || || ||
Sbjct 968 TCAAAAACAAATCAACAATTGGTTTATAAACCAAAGGAAACGCCATTGGAAGCCTTCGGA 1027
Query 1036 GAATATGCC-TTTCGCTATGATGGATGATTCTAGTGGATCATTCTTTACCGAGGAATGAA 1094
||| ||||| ||| | ||||||||| ||||||| || | |||||||||||||| ||||||
Sbjct 1028 GAACATGCCGTTT-GATATGATGGACGATTCTAATGAAACATTCTTTACCGAGTAATGAA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5