BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472603
Length=590
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23410.1 | Symbols: | Ribosomal protein S27a / Ubiquitin fa... 869 0.0
AT3G62250.1 | Symbols: UBQ5 | ubiquitin 5 | chr3:23037094-23037... 442 2e-123
AT2G47110.1 | Symbols: UBQ6 | ubiquitin 6 | chr2:19344635-19345... 370 9e-102
AT2G47115.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 370 9e-102
> AT1G23410.1 | Symbols: | Ribosomal protein S27a / Ubiquitin
family protein | chr1:8314924-8315531 FORWARD LENGTH=608
Length=608
Score = 869 bits (470), Expect = 0.0
Identities = 564/606 (93%), Gaps = 20/606 (3%)
Strand=Plus/Plus
Query 1 AAACCAGAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGT 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 AAACAAGAAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGT 66
Query 61 TGAATCATCAGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCC 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 67 AGAATCATCAGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCC 126
Query 121 ACCGGATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTCGC 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 127 ACCGGATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTAGC 186
Query 181 TGATTACAACATCCAGAAAGAATCGACGCTTCATTTGGTGCTACGTCTGAGAGGAGGTGC 240
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 187 TGATTACAACATCCAGAAAGAGTCGACGCTTCATTTGGTTCTACGTCTGAGAGGAGGTGC 246
Query 241 gaagaagaggaagaagaagacgtacacgaaacctaagaagattaagcataagcataagaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 247 GAAGAAGAGGAAGAAGAAGACGTACACGAAACCTAAGAAGATTAAGCATACGCACAAGAA 306
Query 301 agTGAAGCTAGCGGTTTTGCAGTTTTACAAGGTTGATGGAAGTGGAAAAGTTCAGAGGTT 360
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 307 AGTGAAGCTAGCAGTTCTGCAGTTTTACAAGGTTGATGGAAGTGGGAAAGTTCAGAGGTT 366
Query 361 GAGGAAAGAGTGTCCTTCTGCTAGTTGTGGACCTGGAACTTTCATGGCGAGTCATTTTGA 420
|| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct 367 GAAGAAAGAGTGTCCTTCTGTTAGTTGTGGTCCTGGAACTTTCATGGCGAGTCATTTCGA 426
Query 421 TAGGCATTATTGTGGGAAATGTGGAACTACTTACGTGTTCAAGAAGGCTGATGAAGAGTG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TAGGCATTATTGTGGGAAATGTGGAACTACTTACGTGTTCAAGAAGGCTGATGAAGAGT- 485
Query 481 AGGCTATCTCTTTTTTACTTT-GGAATTT---T------------AATTCAGATATTTTG 524
||| ||| ||||||| |||| ||||||| | |||||||||||||||
Sbjct 486 AGGTTATGTCTTTTTG-CTTTTGGAATTTAGATTGTTTTTTTTTTAATTCAGATATTTTG 544
Query 525 AGATGGTTTTGTTCTATTGAGGGATGGTTTTAATTATTGCATTAATACATTATATTATCT 584
|||||||||| | ||||||||||||||||| |||| |||||| |||||||||||||||||
Sbjct 545 AGATGGTTTTATACTATTGAGGGATGGTTT-AATTGTTGCAT-AATACATTATATTATCT 602
Query 585 TTGATT 590
||||||
Sbjct 603 TTGATT 608
> AT3G62250.1 | Symbols: UBQ5 | ubiquitin 5 | chr3:23037094-23037797
FORWARD LENGTH=704
Length=704
Score = 442 bits (239), Expect = 2e-123
Identities = 385/455 (85%), Gaps = 11/455 (2%)
Strand=Plus/Plus
Query 8 AAA-ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACC-TTAGAGGTTGAAT 65
||| ||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 41 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTT-GAGGTTGAAT 99
Query 66 CATCAGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCCACCGG 125
|||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 100 CATCCGACACCATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCGG 159
Query 126 ATCAGCAACGGTTGATCTTCGCCGGAAAACAA-TTGGAAGACGGAAGAACACTCGCTGAT 184
| ||||| || ||||| |||||||| ||||| ||| ||||||| | || ||||| ||
Sbjct 160 ACCAGCAGCGATTGATTTTCGCCGGGAAACAGCTTG-AAGACGGCCGTACCCTCGCCGAC 218
Query 185 TACAACATCCAGAAAGAATCGACGCTTCATTTGGTGCTACGTCTGAGAGGAGGTGCgaag 244
|||||||||||||| ||||||||||||||| | || || ||||| | || ||||| |||
Sbjct 219 TACAACATCCAGAAGGAATCGACGCTTCATCTCGTCCTCCGTCTCCGTGGTGGTGCTAAG 278
Query 245 aagaggaagaagaagacgtacacgaaacctaagaagattaagcataagcataagaaagTG 304
||||||||||||||||| ||||| || || |||||||| ||||| ||||||||||| ||
Sbjct 279 AAGAGGAAGAAGAAGACTTACACCAAGCCGAAGAAGATCAAGCACAAGCATAAGAAGGTT 338
Query 305 AAGCTAGCGGTT-TTGCAGTTTTACAAGGTTGATGGAAGTGGAAAAGTTCAGAGGTTGAG 363
||||| || ||| || ||||||||||| | |||||| |||||| |||||| | |||||
Sbjct 339 AAGCTCGCTGTTCTT-CAGTTTTACAAAATCGATGGATCTGGAAAGGTTCAGCGTTTGAG 397
Query 364 GAAAGAGTGTCCTT-CTGCTAGTTGTGGACCTGGAACTTTCATGGCGAGTCATTTTGATA 422
||| ||||| ||| | || | |||||| |||| ||||||||||||||||||||||||
Sbjct 398 GAAGGAGTGCCCTAAC-GCAACCTGTGGAGCTGGGACTTTCATGGCGAGTCATTTTGATC 456
Query 423 GGCATTATTGTGGGAAATGTGGAACT-ACTTACGT 456
| ||||| ||||| || |||||| || || |||||
Sbjct 457 GCCATTACTGTGGTAAGTGTGGA-CTCACCTACGT 490
> AT2G47110.1 | Symbols: UBQ6 | ubiquitin 6 | chr2:19344635-19345345
FORWARD LENGTH=711
Length=711
Score = 370 bits (200), Expect = 9e-102
Identities = 364/443 (82%), Gaps = 11/443 (2%)
Strand=Plus/Plus
Query 8 AAA-ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAAC-CTTAGAGGTTGAAT 65
||| ||||||||||||||||||||||||||||||||||| || || || ||||| || |
Sbjct 63 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTC-GAGGTCGAGT 121
Query 66 CATCAGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCCACCGG 125
| || ||||| ||||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct 122 CCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGG 181
Query 126 ATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTC-GCTGAT 184
| ||||| || ||||| ||||||||||| || | ||||||||| | || || || |||
Sbjct 182 ACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTAC-CTTAGCCGAT 240
Query 185 TACAACATCCAGAAAGAATCGACGCTTCAT-TTGGTGCTACGTCTGAGAGGAGGTGCgaa 243
|||||||||||||| ||||| |||||||| ||| | || ||||| | |||||||| ||
Sbjct 241 TACAACATCCAGAAGGAATCAACGCTTCACCTTG-TCCTTCGTCTCCGTGGAGGTGCTAA 299
Query 244 gaagaggaagaagaagacgtacacgaaacctaagaagattaagcataagcataagaaagT 303
|||||||||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct 300 GAAGAGGAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGCACAAGAAGGT 359
Query 304 GAAGCTAGCGGTT-TTGCAGTTTTACAAGGTTGATGGAAGTGGAAAAGTTCAGAGGTTGA 362
||||| || ||| || ||||| |||||||||||||| || || |||||| | ||||
Sbjct 360 CAAGCTCGCTGTTCTT-CAGTTCTACAAGGTTGATGGTTCAGGTAAGGTTCAGCGTTTGA 418
Query 363 GGAAAGAGTGTCCTT-CTGCTAGTTGTGGACCTGGAACTTTCATGGCGAGTCATTTTGAT 421
|||| ||||| ||| | || | ||||| |||| |||||||||||||||||||| |||
Sbjct 419 GGAAGGAGTGCCCTAAC-GCAACCTGTGGTGCTGGGACTTTCATGGCGAGTCATTTCGAT 477
Query 422 AGGCATTATTGTGGGAAATGTGG 444
| || || ||||| || |||||
Sbjct 478 CGTCACTACTGTGGTAAGTGTGG 500
> AT2G47115.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G10660.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr2:19344668-19346921 REVERSE LENGTH=1668
Length=1668
Score = 370 bits (200), Expect = 9e-102
Identities = 364/443 (82%), Gaps = 11/443 (2%)
Strand=Plus/Minus
Query 8 AAA-ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAAC-CTTAGAGGTTGAAT 65
||| ||||||||||||||||||||||||||||||||||| || || || ||||| || |
Sbjct 1639 AAAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACTCTC-GAGGTCGAGT 1581
Query 66 CATCAGACACAATCGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATCCCACCGG 125
| || ||||| ||||||||||| || || ||||| |||||||||||||||||||||||||
Sbjct 1580 CCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCGG 1521
Query 126 ATCAGCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGACGGAAGAACACTC-GCTGAT 184
| ||||| || ||||| ||||||||||| || | ||||||||| | || || || |||
Sbjct 1520 ACCAGCAGCGATTGATTTTCGCCGGAAAGCAGCTCGAAGACGGACGTAC-CTTAGCCGAT 1462
Query 185 TACAACATCCAGAAAGAATCGACGCTTCAT-TTGGTGCTACGTCTGAGAGGAGGTGCgaa 243
|||||||||||||| ||||| |||||||| ||| | || ||||| | |||||||| ||
Sbjct 1461 TACAACATCCAGAAGGAATCAACGCTTCACCTTG-TCCTTCGTCTCCGTGGAGGTGCTAA 1403
Query 244 gaagaggaagaagaagacgtacacgaaacctaagaagattaagcataagcataagaaagT 303
|||||||||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct 1402 GAAGAGGAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGCACAAGAAGGT 1343
Query 304 GAAGCTAGCGGTT-TTGCAGTTTTACAAGGTTGATGGAAGTGGAAAAGTTCAGAGGTTGA 362
||||| || ||| || ||||| |||||||||||||| || || |||||| | ||||
Sbjct 1342 CAAGCTCGCTGTTCTT-CAGTTCTACAAGGTTGATGGTTCAGGTAAGGTTCAGCGTTTGA 1284
Query 363 GGAAAGAGTGTCCTT-CTGCTAGTTGTGGACCTGGAACTTTCATGGCGAGTCATTTTGAT 421
|||| ||||| ||| | || | ||||| |||| |||||||||||||||||||| |||
Sbjct 1283 GGAAGGAGTGCCCTAAC-GCAACCTGTGGTGCTGGGACTTTCATGGCGAGTCATTTCGAT 1225
Query 422 AGGCATTATTGTGGGAAATGTGG 444
| || || ||||| || |||||
Sbjct 1224 CGTCACTACTGTGGTAAGTGTGG 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28382293055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5