BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472612
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23490.1 | Symbols: ATARFA1A, ATARF1, ATARF, ARF1 | ADP-ribo... 1498 0.0
AT1G70490.1 | Symbols: ATARFA1D, ARFA1D | Ras-related small GTP... 745 0.0
AT1G10630.1 | Symbols: ATARFA1F, ARFA1F | ADP-ribosylation fact... 614 6e-175
AT3G62290.1 | Symbols: ATARFA1E, ARFA1E | ADP-ribosylation fact... 516 2e-145
AT1G60480.1 | Symbols: | pseudogene, putative ADP-ribosylation... 171 2e-41
> AT1G23490.1 | Symbols: ATARFA1A, ATARF1, ATARF, ARF1 | ADP-ribosylation
factor 1 | chr1:8336683-8338672 FORWARD LENGTH=982
Length=982
Score = 1498 bits (811), Expect = 0.0
Identities = 896/936 (96%), Gaps = 10/936 (1%)
Strand=Plus/Plus
Query 1 TCTCTTTCAAATTCTGTTCGTCTCTCGCGAtctctctctctctctcAGATAGCTCCGAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 TCTCTTTCAAATTCTGTTCGTCTCTCGCGATCTCTCTCTCTCTCTCAGATAGCTCCGAAA 110
Query 61 CTTTCACGTAGAGGTAAGTGAAGCAGGATGGGTTTGTCATTCGCCAAGCTTTTTAGCCGG 120
|||||||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 111 CTTTCACGCAGAGTTAAGTGAAGCAGGATGGGATTGTCATTCGCCAAGCTTTTTAGCAGG 170
Query 121 CTTTTTGCCAAGAGGGAGATGCGAATTCTCATGGTTGGTCTTGATGCTGCTGGTAAGACC 180
||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 171 CTTTTTGCCAAGAAGGAGATGAGAATTCTGATGGTTGGTCTTGATGCTGCTGGTAAGACC 230
Query 181 ACCATTTTGTACAAGCTCAAGCTCGGAGAGATTGTAACCACCATTCCTACTATTGGGTTC 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 231 ACCATTTTGTACAAGCTCAAGCTCGGAGAGATTGTAACCACCATTCCCACTATTGGGTTC 290
Query 241 AATGTGGAAACTGTGGAGTACAAGAACATCAGTTTCACAGTGTGGGATGTCGGGGGTCAG 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 291 AATGTGGAGACTGTGGAGTACAAGAACATCAGTTTCACAGTGTGGGATGTCGGCGGTCAG 350
Query 301 GACAAGATCCGTCCCTTGTGGAGGCACTACTTCCAGAACACTCAAGGTCTTATCTTTGTG 360
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 351 GATAAGATCCGTCCCTTGTGGAGGCATTACTTCCAGAACACCCAAGGTCTTATCTTTGTG 410
Query 361 GTGGACAGCAATGACAGAGACCGTGTTGTTGAGGCTAGAGATGAATTGCACCGAATGCTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 411 GTGGACAGCAATGACAGAGACCGTGTTGTTGAGGCTAGAGATGAATTGCACCGAATGTTG 470
Query 421 AATGAGGATGAGCTGCGTGATGCTGTTCTGCTCGTGTTTGCTAACAAGCAGGATCTCCCA 480
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 471 AATGAGGACGAGCTGCGTGATGCTGTTCTGCTCGTATTTGCTAACAAGCAGGATCTCCCA 530
Query 481 AATGCTATGAATGCAGCTGAAATCACTGATAAGCTTGGTCTCCACTCTCTCCGTCAGCGT 540
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 531 AATGCTATGAATGCAGCTGAGATCACGGATAAGCTTGGTCTCCACTCTCTCCGTCAGCGT 590
Query 541 CACTGGTACATCCAGAGCACATGTGCCACTTCAGGTGAGGGGCTTTACGAAGGTCTTGAC 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 591 CACTGGTACATCCAGAGCACATGTGCCACTTCAGGCGAGGGGCTTTACGAAGGTCTTGAC 650
Query 601 TGGTTGTCCAACAACATTGCCGGCAAGGCGTAGATGGAAAGTTCGTGGCCGAGTTGATTT 660
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 651 TGGTTGTCCAACAACATTGCCGGCAAGGCGTAGAGGGAAAGTTCGTGGTGGAGTTGATTT 710
Query 661 GCTGAGCAAATCTGGATGCAGGGGCAAACATTATCTGAAttttttttGTTGGTTTCCGCT 720
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 711 GCTGAGCAAATCTGGATGCAGGGGCAAACATTATCTGAATTTTTTTT-TTGGTTTCCG-T 768
Query 721 TTT-GTTATTGTTCTGCttttttttttGGGATATGTGGATGGATTTTGTGATTGTACGTA 779
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 769 TTTCGTTATTGTTCTGCTTTTTTTTTTGGGATATGTCGATGGATTTTGTGATTGTACGTA 828
Query 780 GAACTTAGAAAAA--CTACCTTTTATATAGTTTTGGTAAAACTGTAATCGAAGATTA-AT 836
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 829 GAACTTAGAAAAAAACTACCTTTTATATAGTTTTGGTAAAACTGTAATCGAAGATTTCAC 888
Query 837 CTACTGCTTTCGTGGTTTTTGG-CACATTTTACTTTTGCACTTTAATGCATATGTTGGAA 895
||||||||||||||||||| || |||||||||||| |||||||| || ||||||||||||
Sbjct 889 CTACTGCTTTCGTGGTTTT-GGTCACATTTTACTTGTGCACTTTGATTCATATGTTGGAA 947
Query 896 TGCGGTTTCGTTTACACACCTGCTACACGAAACTTG 931
|||||||||||| ||| | ||||||||||||||||
Sbjct 948 TGCGGTTTCGTTGGCAC-C-TGCTACACGAAACTTG 981
> AT1G70490.1 | Symbols: ATARFA1D, ARFA1D | Ras-related small GTP-binding
family protein | chr1:26563924-26565810 REVERSE LENGTH=918
Length=918
Score = 745 bits (403), Expect = 0.0
Identities = 538/603 (89%), Gaps = 9/603 (1%)
Strand=Plus/Plus
Query 35 tctctctctctcAGATAGCTCCGAAACTTTCACGTAGAGGTAAGTGAAGCAGGATGGGTT 94
|||||||||||||||| ||||||||| || | | || ||||||||| ||||| |
Sbjct 88 TCTCTCTCTCTCAGATCTCTCCGAAACATT--C-T--TCGT-AGTGAAGCAAAATGGGGT 141
Query 95 TGTCATTCGCCAAGCTTTTTAGCCGGCTTTTTGCCAAGAGGGAGATGCGAATTCTCATGG 154
|| ||||||||||| |||||| ||||||||||||||| ||||||||||||||| ||||
Sbjct 142 TGAGTTTCGCCAAGCTGTTTAGCAGGCTTTTTGCCAAGAAGGAGATGCGAATTCTGATGG 201
Query 155 TTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCGGAGAGATTG 214
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 202 TTGGTCTTGATGCTGCTGGTAAGACCACAATCTTGTACAAGCTCAAGCTCGGAGAGATTG 261
Query 215 TAACCACCATTCCTACTATTGGGTTCAATGTGGAAACTGTGGAGTACAAGAACATCAGTT 274
| |||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 262 TCACCACCATCCCTACTATTGGTTTCAATGTGGAAACTGTGGAATACAAGAACATTAGTT 321
Query 275 TCACAGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGGCACTACTTCC 334
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 322 TCACCGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGACACTACTTCC 381
Query 335 AGAACACTCAAGGTCTTATCTTTGTGGTGGACAGCAATGACAGAGACCGTGTTGTTGAGG 394
|||||||||||||||| |||||||| || || ||||||||||||||| | ||||||||||
Sbjct 382 AGAACACTCAAGGTCTAATCTTTGTTGTTGATAGCAATGACAGAGACAGAGTTGTTGAGG 441
Query 395 CTAGAGATGAATTGCACCGAATGCTGAATGAGGATGAGCTGCGTGATGCTGT-TCTGCTC 453
|| |||||||| | ||| | |||||||||||||| ||||||||||||||||| | ||||
Sbjct 442 CTCGAGATGAACTCCACAGGATGCTGAATGAGGACGAGCTGCGTGATGCTGTGT-TGCTT 500
Query 454 GTGTTTGCTAACAAGCAGGATCTCCCAAATGCTATGAATGCAGCTGAAATCACTGATAAG 513
|||||||| |||||||| ||||| |||||||||||||| || ||||||||||| ||||||
Sbjct 501 GTGTTTGCCAACAAGCAAGATCTTCCAAATGCTATGAACGCTGCTGAAATCACAGATAAG 560
Query 514 CTTGGTCTCCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGCCACTTCA 573
||||| || ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 561 CTTGGCCTTCACTCCCTCCGTCAGCGTCATTGGTATATCCAGAGCACATGTGCCACTTCA 620
Query 574 GGTGAGGGGCTTTACGAAGGTCTTGACTGGTTGTCCAACAACATTGCCGGCAAGGCGTAG 633
||||| |||||||| |||||||| |||||| | ||||||||||| || |||||||| | |
Sbjct 621 GGTGAAGGGCTTTATGAAGGTCTGGACTGGCTCTCCAACAACATCGCTGGCAAGGCAT-G 679
Query 634 ATG 636
|||
Sbjct 680 ATG 682
> AT1G10630.1 | Symbols: ATARFA1F, ARFA1F | ADP-ribosylation factor
A1F | chr1:3512795-3514729 REVERSE LENGTH=1043
Length=1043
Score = 614 bits (332), Expect = 6e-175
Identities = 469/535 (88%), Gaps = 9/535 (2%)
Strand=Plus/Plus
Query 90 GGGTTTGTCATTCGCCAAGCTTTTTAGCCGGCTTTTTGCCAAGAGGGAGATGCGAATTCT 149
||| || ||||| || |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 107 GGGCTT-TCATTTGCAAAGCTTTTTAGCCGGCTTTTTGCCAAGAAGGAGATGCGAATCCT 165
Query 150 CATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCGGAGA 209
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 166 TATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTTGGTGA 225
Query 210 GATTGTAACCACCATTCCTACTATTGGGTTCAATGTGGAAACTGTGGAGTACAAGAACAT 269
|||||| ||||||||||| || || ||||| |||||||| || || ||||||||||||||
Sbjct 226 GATTGTCACCACCATTCCCACCATCGGGTTTAATGTGGAGACGGTTGAGTACAAGAACAT 285
Query 270 CAGTTTCACAGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGGCACTA 329
||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 286 CAGCTTCACGGTTTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGACACTA 345
Query 330 CTTCCAGAACACTCAAGGTCTTATCTTTGTGGTGGACAGCAATGACAGAGACCGTGTTGT 389
|||||| |||||||||||||| || ||||| || || |||||||||||||||||||||||
Sbjct 346 CTTCCAAAACACTCAAGGTCTGATATTTGTTGTTGATAGCAATGACAGAGACCGTGTTGT 405
Query 390 TGAGGCTAGAGATGAA-TTGCACCGAATGCTGAATGAGGATGAGCTGCGTGATGCTGT-T 447
||| || ||||||||| || ||| | ||| ||||||| |||||||| || ||||| || |
Sbjct 406 TGAAGCCAGAGATGAACTT-CACAGGATGTTGAATGAAGATGAGCTTCGGGATGCAGTAT 464
Query 448 CTGCTCGTGTTTGCTAACAAGCAGGATCTCCCAAATGCTATGAATGCAGCTGAAATCACT 507
|||| |||||||| |||||||||||||| ||||| ||||||||||| ||||| || |||
Sbjct 465 -TGCTTGTGTTTGCCAACAAGCAGGATCTTCCAAACGCTATGAATGCTGCTGAGATTACT 523
Query 508 GATAAGCTTGGTCTCCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGCC 567
||||||||||| || ||||| ||||| || || |||||||||||||| |||||||| ||
Sbjct 524 GATAAGCTTGGCCTTCACTCACTCCGGCAACGCCACTGGTACATCCAAAGCACATGCGCA 583
Query 568 ACTT-CAGGTGAGGGGCTTTACGAAGGTCTTGACTGG-TTGTCCAACAACATTGC 620
||| | ||||| ||||| || |||||||| || ||| || ||||||||||||||
Sbjct 584 ACTAGC-GGTGAAGGGCTCTATGAAGGTCTGGATTGGCTT-TCCAACAACATTGC 636
> AT3G62290.1 | Symbols: ATARFA1E, ARFA1E | ADP-ribosylation factor
A1E | chr3:23051650-23053757 FORWARD LENGTH=867
Length=867
Score = 516 bits (279), Expect = 2e-145
Identities = 461/550 (84%), Gaps = 8/550 (1%)
Strand=Plus/Plus
Query 88 ATGGGTTTGTCATTCGCCAAGCTT-TTTAGCCGGCTTTTTGCCAAGAGGGAGATGCGAAT 146
|||||| | || |||| ||| || || ||| ||| ||||| |||| |||||||| ||
Sbjct 110 ATGGGTCTATCCTTCGGAAAG-TTGTTCAGCAAGCTCTTTGCAAAGAAAGAGATGCGTAT 168
Query 147 TCTCATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCGG 206
|||||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| ||
Sbjct 169 CCTCATGGTGGGTCTCGATGCAGCTGGTAAGACTACGATCTTGTACAAGCTCAAGCTTGG 228
Query 207 AGAGATTGTAACCACCATTCCTACTATTGGGTTCAATGTGGAAACTGTGGAGTACAAGAA 266
|||||| || || || ||||| || ||||| ||||||||||| |||||||| ||||||||
Sbjct 229 AGAGATCGTGACTACGATTCCAACCATTGGTTTCAATGTGGAGACTGTGGAATACAAGAA 288
Query 267 CATCAG-TTTCACAGTGTGGGATGTCGGGGGTCAGGACAAGATCCGTCCCTTGTGGAGGC 325
||| || ||| || |||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 289 CATTAGCTTT-ACCGTGTGGGATGTCGGGGGTCAAGACAAGATTCGTCCATTGTGGAGGC 347
Query 326 ACTACTTCCAGAACACTCAAGGTCTTATCTTTGTGGTGGACAGCAATGA-CAGAGACCGT 384
||||||||||||||||||| || |||||||||||||||||||||||||| | | ||||||
Sbjct 348 ACTACTTCCAGAACACTCAGGGACTTATCTTTGTGGTGGACAGCAATGATC-GTGACCGT 406
Query 385 GTTGTTGAGGCTAGAGATGAA-TTGCACCGAATGCTGAATGAGGATGAGCTGCGTGATGC 443
||||| || || |||||||| || ||| ||||| |||| || |||||| || | |||||
Sbjct 407 GTTGTGGAAGCCAGAGATGAGCTT-CACAGAATGTTGAACGAAGATGAGTTGAGAGATGC 465
Query 444 TGTTCTGCTCGTGTTTGCTAACAAGCAGGATCTCCCAAATGCTATGAATGCAGCTGAAAT 503
||| || ||||| |||||||||||||| ||||| |||||||| ||||| || ||||| ||
Sbjct 466 TGTGCTTCTCGTTTTTGCTAACAAGCAAGATCTTCCAAATGCGATGAACGCCGCTGAGAT 525
Query 504 CACTGATAAGCTTGGTCTCCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATG 563
|| ||||||||||| || |||||||||||||| || ||||||||||| |||||||||||
Sbjct 526 AACCGATAAGCTTGGACTTCACTCTCTCCGTCAACGACACTGGTACATACAGAGCACATG 585
Query 564 TGCCACTTCAGGTGAGGGGCTTTACGAAGGTCTTGACTGGTTGTCCAACAACATTGCCGG 623
||| || || || || |||||||| || || ||||||||| | || |||||||| ||
Sbjct 586 TGCTACCTCCGGAGAAGGGCTTTATGAGGGACTTGACTGGCTCTCTAACAACATCGCAAA 645
Query 624 CAAGGCGTAG 633
|||||| |||
Sbjct 646 CAAGGCTTAG 655
> AT1G60480.1 | Symbols: | pseudogene, putative ADP-ribosylation
factor, similar to ADP-ribosylation factor GI:166586 from
(Arabidopsis thaliana); blastp match of 100% identity and 7.4e-53
P-value to GP|17154685|emb|CAD12855.1||AJ421017 ADP-ribosylation
factor {Gossypium hirsutum} | chr1:22284122-22285076
REVERSE LENGTH=955
Length=955
Score = 171 bits (92), Expect = 2e-41
Identities = 129/147 (88%), Gaps = 1/147 (1%)
Strand=Plus/Plus
Query 90 GGGTTTGTCATTCGCCAAGCTTTTTAGCCGGCTTTTTGCCAAGAGGGAGATGCGAATTCT 149
||| || ||||| || |||||||| ||| ||||||| ||||||| ||||||||| || ||
Sbjct 4 GGGCTT-TCATTTGCAAAGCTTTTCAGCAGGCTTTTCGCCAAGAAGGAGATGCGCATCCT 62
Query 150 CATGGTTGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTCGGAGA 209
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 63 TATGGTGGGTCTTGATGCTGCTGGTAAGACCACCATTTTGTACAAGCTCAAGCTTGGTGA 122
Query 210 GATTGTAACCACCATTCCTACTATTGG 236
|||||| |||||||| || || |||||
Sbjct 123 GATTGTCACCACCATCCCCACCATTGG 149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45512137182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5