BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472613
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23510.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 773 0.0
AT1G23520.1 | Symbols: | Domain of unknown function (DUF220) |... 239 3e-62
AT1G23660.1 | Symbols: | Domain of unknown function DUF220 | c... 52.8 5e-06
> AT1G23510.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Domain of unknown function (DUF220)
(TAIR:AT1G23520.1); Has 133 Blast hits to 120 proteins in
9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr1:8341449-8342796 REVERSE LENGTH=962
Length=962
Score = 773 bits (418), Expect = 0.0
Identities = 483/513 (94%), Gaps = 9/513 (2%)
Strand=Plus/Plus
Query 1 ATGGGCGTATTTCCTGGATTTGGTAGCTGGATCAATCAAAACACTCAACAGCTTCCATCA 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 151 ATGGGTGTATTTCCTGGATTTGGTAGCTGGATCAATCAAAACACTCAACAGCTTCC-TC- 208
Query 61 ATTAAGGCAGAGTCCGAGAGATATGAGAATGTGAAATTTAAGTCAAAGTCGGAGACAAAT 120
| ||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 209 A-CAAGGCAGAGTCCGAGAGATCTGAGAATGCGAAATTTAAGTCAAAGTCAGAGACAAAC 267
Query 121 ACTCATGAGGAGAGAGATGAGATGAAACATCAATTAAAACTTTGGAGAGATGCAGAGCAG 180
|||||||||| ||||||||| |||||||| ||||||||||||||||||||| ||||| ||
Sbjct 268 ACTCATGAGGCGAGAGATGAAATGAAACAGCAATTAAAACTTTGGAGAGATACAGAGAAG 327
Query 181 AAGGAACAATGGAATGATGAC-CCACCTAAGGTGAAGGTGGAAAGAAGAAATGATCTAGA 239
||||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||
Sbjct 328 AAGGAACAATGGAATGATG-CTCCTCCTAATGTGAAGGTGGAAAGAAGAAATGATCTAGA 386
Query 240 ATGGGGTATGTCAACTATAGAAATGCAATTTACATTAGGATTGCCTCCTCAAGCAGCTTA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 ATGGGGTATGTCAACTATAGAAATGCAATTTACATTAGGATTGCCTCCTCAAGCAGCTTA 446
Query 300 CGACGTTTTAACTAATCCAGACAACCAACCATACT-CAAGAATAATCAAAGGACGCCAAC 358
| ||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 447 CAACGTTTTAACTAATCCAGACAACCAACCATACTTCA-GAATCATCAAAGGACGCCAAC 505
Query 359 TTTTGGAAAACATATCAAGAAAAGTTGTGTCCCCGGATACCGGGAAAGGGCAGCTTGTGG 418
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 506 TTTTGGAAAACATATCAAGAAAAGTTGTGTCGCCGGATACCGGGAAAGGGCAGCTTGTGG 565
Query 419 ACAC-AGAGAAAGCTGTGGCCTGGAACTTCCTTTGGTTGTCTGGAACCATCCCGATAATT 477
|||| | ||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 566 ACACCA-AGAAAGCTGTGGCCTGGAACTTCCTTTGGTTATCTGGAACTATCCCGATAATT 624
Query 478 GCAAATTTTATCGAAAATCGACAATTCCTTACC 510
||||||||||||||| | |||||| ||||||||
Sbjct 625 GCAAATTTTATCGAACACCGACAAGTCCTTACC 657
Score = 387 bits (209), Expect = 1e-106
Identities = 231/242 (95%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 514 CTATACGTAGATTCAGAACTCTTTTGCAAACACGAGAAGCCTAGGAGTACAGAAGAATAC 573
||||||||||||||||||| ||| |||||||| ||||||| | ||||||||||||||||
Sbjct 720 CTATACGTAGATTCAGAACGCTTGTGCAAACAAAAGAAGCCGAAGAGTACAGAAGAATAC 779
Query 574 GAAAAATGTAGCCGCGGACAAGGAAGGATTGGGTCGAAAGTGACATTGGACCAGATGTTT 633
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAAAGATGTAGCCGCGGACAAGGAAGGATTGGGTCGAAAGTGACATTGGACCAGATGTTT 839
Query 634 AAGCCTTCTTTTCTTTTTAATCTGCCACCGATTTCTTGGTACGTTCGTCGGATCACCATC 693
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 840 AAGCCTTCTTTTATTTTTAATCTGCCACCGATTTCTTGGTACGTTCGTCGGATAACCATC 899
Query 694 AAGACCATGAAAACTCTGATCGAAGATCTTCAAATTACAAGTGCCGTGATGCGAGGTATT 753
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 900 AAGACCATGAAAACTCTGATCGAAGATCTTCAAATTACAAGTGCCATGATCCGAGGTATT 959
Query 754 TG 755
||
Sbjct 960 TG 961
> AT1G23520.1 | Symbols: | Domain of unknown function (DUF220)
| chr1:8343424-8344839 REVERSE LENGTH=1103
Length=1103
Score = 239 bits (129), Expect = 3e-62
Identities = 331/424 (78%), Gaps = 32/424 (8%)
Strand=Plus/Plus
Query 84 TGAGAATGTGAAATTTAAGTCAAAGTC-G-GA-GACAAATAC---TCATGAGGAGAGAGA 137
|||||||||||||| |||||||| ||| | | | |||||| ||| || |||||| |
Sbjct 227 TGAGAATGTGAAATCTAAGTCAAGGTCAGAAATAAAAAATACTGATCACGAAGAGAGAAA 286
Query 138 TGAGATGAAACATCAATTAAAACTTTGGAGAGATGCAGAGCAGAAGGAACAAT-GGAATG 196
||||||||| | ||| |||||||||||||| |||||||| |||| ||||||| |||| |
Sbjct 287 TGAGATGAAGGAGCAACTAAAACTTTGGAGACATGCAGAGAAGAAAGAACAATGGGAA-G 345
Query 197 ATGACCCACCTAAGGTGAAGGTGGAAAGAAGAAATGATCTAGAATGGGGTATGTCAACTA 256
||| ||| ||||||||||||| | ||| | | || || |||| | || | | |
Sbjct 346 ATGTCCCTGCTAAGGTGAAGGT-G---GAA-ACA-GA---AG-ATGGTCTTTG-CCA-TG 393
Query 257 TAGAAATGCAATTTACATTAGGATTGCCTCCTCAAGCAGCTTACGACGTTTTAACTAATC 316
| || ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 394 TGGACATGGTATTTACATTAGGATTGCCTCCTCAAGCAGCCTACGACGTTTTGACTAATC 453
Query 317 CAGACAACCAACCATACTCAAGAATAATCAAAGGACGCCA--A-CTTTTGGAAAACATAT 373
| ||||||||| |||||||||||||||| || |||||| | ||| |||| ||| |||
Sbjct 454 CCGACAACCAATCATACTCAAGAATAATTAACCAACGCCACGAACTTCTGGATAACGTAT 513
Query 374 CAAGAAAAGTTGTGTCCCCGGATACCGGGAAAGGGC-AG-CTTGTGGACACAGAGAAAGC 431
||||||| || || | | ||||| || | | || || | ||||| ||||||||||
Sbjct 514 CAAGAAATGT-GT-TGAC-GGATAATGG-ATCGAGCCAGACG-GTGGAGGCAGAGAAAGC 568
Query 432 TGTGGCCTGGAACTTCCTTTGGTTGTCTGGAACCATCCCGATAATTGCAA-ATTTTATCG 490
|||||||||||| || |||| | ||| ||||| |||||||||| | | | |||| |||
Sbjct 569 TGTGGCCTGGAAGTTTCTTTCATGGTCGGGAACTATCCCGATAAGT-CTAGATTTCGTCG 627
Query 491 AAAA 494
||||
Sbjct 628 AAAA 631
> AT1G23660.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8371609-8372845 REVERSE LENGTH=868
Length=868
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 11 TTCCTGGATTTGGTAGCTGGATCAATCA 38
||||||||||||||||||||||||||||
Sbjct 84 TTCCTGGATTTGGTAGCTGGATCAATCA 111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36670927310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5