BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472615
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23520.1 | Symbols: | Domain of unknown function (DUF220) |... 1249 0.0
AT1G23510.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 488 4e-137
> AT1G23520.1 | Symbols: | Domain of unknown function (DUF220)
| chr1:8343424-8344839 REVERSE LENGTH=1103
Length=1103
Score = 1249 bits (676), Expect = 0.0
Identities = 929/1040 (89%), Gaps = 61/1040 (6%)
Strand=Plus/Plus
Query 41 TATC-TCTTTGC-CTCGGACCAGACTCTCTTTAGATCGTCATTTTCTCTCTGTCGACTAA 98
|||| ||||| | |||||| | ||||||||| |||||||||||||||||| ||||||||
Sbjct 95 TATCATCTTT-CTCTCGGA-C--ACTCTCTTTGGATCGTCATTTTCTCTCTATCGACTAA 150
Query 99 ATTTTAAGAGTGGAATGGGTATATTGCCTGGATTTGATGGCTTGATCAACCAGAACACTC 158
||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||
Sbjct 151 ATTTTAAGAGTGGAATGGGTATATTTCCTGGATTTGGTGGCTTGATCAACCATAACACTC 210
Query 159 AACAGCTTCCTAAGGCTGAGTCTAAGAGATCTGAGAATGTGAAATCTAAGTCAAGGTCAG 218
|| || ||| | ||||| | ||||||||||||||||||||||||||||||
Sbjct 211 AAGAG---CCT----C-----CTAAG-G--CTGAGAATGTGAAATCTAAGTCAAGGTCAG 255
Query 219 AGAT---AAGTAC---TCACGAGGAGAGAGATGAGATGAAGGAACAATTAAAACTTTGGA 272
| || || ||| |||||| |||||| ||||||||||||| ||| ||||||||||||
Sbjct 256 AAATAAAAAATACTGATCACGAAGAGAGAAATGAGATGAAGGAGCAACTAAAACTTTGGA 315
Query 273 GACATGCAGAGAAGAAAGAACAATGGCAAGATGTCCCTGCTAAAGTGAAGGTGGAAACAG 332
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 316 GACATGCAGAGAAGAAAGAACAATGGGAAGATGTCCCTGCTAAGGTGAAGGTGGAAACAG 375
Query 333 AAAATGGTCTTTGTCATGTGGACATGGTATTTACATTAGGATTGCCTCCTCAAGCAGCCT 392
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AAGATGGTCTTTGCCATGTGGACATGGTATTTACATTAGGATTGCCTCCTCAAGCAGCCT 435
Query 393 ACGACGTGTTGACTAATCCCGACAACCAACCATACTCACGAATAATCAACCACCGCCACG 452
||||||| ||||||||||||||||||||| |||||||| ||||||| ||||| |||||||
Sbjct 436 ACGACGTTTTGACTAATCCCGACAACCAATCATACTCAAGAATAATTAACCAACGCCACG 495
Query 453 AACTTCTGGATAACGTATCAAGAAAAGTGTTGACGGATGATGGATCGAGTCAGACGGTGG 512
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct 496 AACTTCTGGATAACGTATCAAGAAATGTGTTGACGGATAATGGATCGAGCCAGACGGTGG 555
Query 513 AGGCGGAGAAAGCTGTGGCCTGGAAGTTTCTTTCGTGGTCTGGAACTATCCCGATAAGTC 572
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 556 AGGCAGAGAAAGCTGTGGCCTGGAAGTTTCTTTCATGGTCGGGAACTATCCCGATAAGTC 615
Query 573 TCGATTTCGTCGAAAACCGTAAAAATCTTTCTGCAGTATATATGAAAAGGAAAATGATGT 632
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 616 TAGATTTCGTCGAAAACCGTAAGAATCTTTCTGCAGTATATATGAAAAGGAAAATGATGT 675
Query 633 TCATGAAAACTTTTGAGGGTAGTTGGAAAGTGGAGCCAATATACGTGGATTCAGAGCGCT 692
||||||||| |||||||||||||||||||||||||||||||||||| |||||| | || |
Sbjct 676 TCATGAAAAGTTTTGAGGGTAGTTGGAAAGTGGAGCCAATATACGTAGATTCAAAACGTT 735
Query 693 TGTGCAAGGGCATTGATTGCTCGAGCATGAAGCCGAAAAGTCGAGAAGAATACCGTAAAT 752
|||||||| || | | ||||||| ||||||||||||||||||| |||||
Sbjct 736 TGTGCAAG--CA---A-------A---TGAAGCCAAAAAGTCGAGAAGAATACCATAAAT 780
Query 753 GTAGTGGTGGACAAGGAAAGATTGCGTCGAAGGTGACAATGAACCAGACCTTTCAGCCTT 812
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 781 GTAGTGGTGGACAAGGAAAGATTGCGTCGAAGGTGAAAATGAACCAGACCTTTCAGCCTT 840
Query 813 CTTTTCCTTTTAATCTGCCACCGCTTTCTTGGTACATCCGTGAGATCACCATCAAGATCA 872
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 841 CTTTTCCTTTTAATCTGCCACCGCTTTCTTGGTACATCCGTGATATCACCATCAAGATTA 900
Query 873 CTAAGGCTCTGATAGAAGATCTTCAAGATATGGACGCCAAGCTCCGAGGTGTTTGAAATA 932
|||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 901 CTAAGGCTCTGATACAAGATCTTCAAGATATGGGCGCCAAGCTCCGAGGCGTTTGAAATG 960
Query 933 CCCTCAAACATTAAATAGGTTTCTAAATC-C----G-A-A-----GA-G-G-ACAAATAC 977
|||||||||||| ||||||||||||||| | | | | || | | ||||||||
Sbjct 961 CCCTCAAACATTCGATAGGTTTCTAAATCACTATAGTATAAATCCGAAGAGGACAAATAC 1020
Query 978 TAATCTTCAAAATCACTTTATTCATCTTAATTAAGTGTATTCTTCTTTACCGAATACAAA 1037
||||||| | |||||||| ||||||||||| |||||||||||| | ||||||||| |||
Sbjct 1021 TAATCTTTATAATCACTTCATTCATCTTAAC-AAGTGTATTCTT-TATACCGAATA-AAA 1077
Query 1038 AAATATGAGTATCGTGTTAA 1057
||| ||||||||||||||||
Sbjct 1078 AAA-ATGAGTATCGTGTTAA 1096
> AT1G23510.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Domain of unknown function (DUF220)
(TAIR:AT1G23520.1); Has 133 Blast hits to 120 proteins in
9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr1:8341449-8342796 REVERSE LENGTH=962
Length=962
Score = 488 bits (264), Expect = 4e-137
Identities = 680/869 (78%), Gaps = 75/869 (9%)
Strand=Plus/Plus
Query 66 TCTTTAGATCGTCATTTTCTCTCTGTCGACTAAATTTTAAGAGTGGA-ATGGGTATATTG 124
||||| |||||||||||||||| ||| ||||||| |||||||| | | |||||| ||||
Sbjct 103 TCTTTGGATCGTCATTTTCTCTTTGTGGACTAAAGTTTAAGAGAGAACATGGGTGTATTT 162
Query 125 CCTGGATTTGATGGCTTGATCAACCAGAACACTCAACAGCTTCCT---AAGGCTGAGTCT 181
|||||||||| | ||| |||||| || |||||||||||||||||| ||||| |||||
Sbjct 163 CCTGGATTTGGTAGCTGGATCAATCAAAACACTCAACAGCTTCCTCACAAGGCAGAGTCC 222
Query 182 AAGAGATCTGAGAATGTGAAATCTAAGTCAAGGTCAGAGATAAGTACTCACGAGGAGAGA 241
||||||||||||||| ||||| |||||||| |||||||| || ||||| |||| ||||
Sbjct 223 GAGAGATCTGAGAATGCGAAATTTAAGTCAAAGTCAGAGACAAACACTCATGAGGCGAGA 282
Query 242 GATGAGATGAAGGAACAATTAAAACTTTGGAGACATGCAGAGAAGAAAGAACAATGGCAA 301
||||| ||||| | |||||||||||||||||| || |||||||||| ||||||||| ||
Sbjct 283 GATGAAATGAAACAGCAATTAAAACTTTGGAGAGATACAGAGAAGAAGGAACAATGG-AA 341
Query 302 -GATGTC-CCTGCTAAAGTGAAGGT-G---GAA-ACA-GA---A-AATGGTCTTTGTC-A 348
|||| | ||| |||| |||||||| | ||| | | || | ||||| | |||| |
Sbjct 342 TGATG-CTCCTCCTAATGTGAAGGTGGAAAGAAGAAATGATCTAGAATGGGGTATGTCAA 400
Query 349 -TGTGGACATGGTATTTACATTAGGATTGCCTCCTCAAGCAGCCTACGACGTGTTGACTA 407
| | || ||| |||||||||||||||||||||||||||||| ||| |||| || ||||
Sbjct 401 CTATAGAAATGCAATTTACATTAGGATTGCCTCCTCAAGCAGCTTACAACGTTTTAACTA 460
Query 408 ATCCCGACAACCAACCATACT-CACGAATAATCAACC-ACCGCCACGAACTTCTGGATAA 465
|||| |||||||||||||||| || |||| ||||| || |||| | ||| |||| ||
Sbjct 461 ATCCAGACAACCAACCATACTTCA-GAATCATCAAAGGAC-GCCA--A-CTTTTGGAAAA 515
Query 466 CGTATCAAGAAAAGT-GT-T-GACGGATGAT-GG-ATCGAGTCAGACG-GTGGAGGCGGA 519
| ||||||||||||| || | | ||||| | || | | | ||| | ||||| | |
Sbjct 516 CATATCAAGAAAAGTTGTGTCGCCGGAT-ACCGGGAAAGGG-CAG-CTTGTGGACACCAA 572
Query 520 GAAAGCTGTGGCCTGGAAGTTTCTTTCGTGGTCTGGAACTATCCCGATAAGTCTCGA-TT 578
|||||||||||||||||| || |||| || ||||||||||||||||||| | | | ||
Sbjct 573 GAAAGCTGTGGCCTGGAACTTCCTTTGGTTATCTGGAACTATCCCGATAATTG-CAAATT 631
Query 579 TCGTCGAAAACCGTAAAAATCTTT-CTGCAGTATATATGA-AAAGGAA-AATGATGTTCA 635
| ||||| |||| | || || || | | | ||||| | |||| || || ||||||||
Sbjct 632 TTATCGAACACCG-ACAAGTCCTTACCGTACAATATACGGTAAAG-AATAA-GATGTTCA 688
Query 636 TGAAA-ACT-TTTGAGGGTAGTTGGAAAGTGGAGCCAATATACGTGGATTCAGAGCGCTT 693
| ||| | | |||| ||| | ||||||||||| ||||||| |||||||| |||||
Sbjct 689 T-AAACA-TGTTTGTCAGTA-T---AAAGTGGAGCCGCTATACGTAGATTCAGAACGCTT 742
Query 694 GTGCAAGGGCATTGATTGCTCGAGCATGAAGCCGAAAAGT-CGAGAAGAATACCGTAA-A 751
|||||| || | | | ||||||||| ||| | |||||||||| | || |
Sbjct 743 GTGCAAA--CA---A-------A--A-GAAGCCGAAGAGTAC-AGAAGAATAC-GAAAGA 785
Query 752 TGTAGTGGTGGACAAGGAAAGATTGCGTCGAAGGTGACAATGAACCAGACCTTTCAGCCT 811
||||| | |||||||||| ||||| |||||| |||||| || |||||| ||| |||||
Sbjct 786 TGTAGCCGCGGACAAGGAAGGATTGGGTCGAAAGTGACATTGGACCAGATGTTTAAGCCT 845
Query 812 TCTTTTCCTTTTAATCTGCCACCGCTTTCTTGGTACATCCGT-GAGATCACCATCAAGAT 870
|||||| |||||||||||||||| ||||||||||| | ||| | ||| ||||||||||
Sbjct 846 TCTTTTATTTTTAATCTGCCACCGATTTCTTGGTACGTTCGTCG-GATAACCATCAAGAC 904
Query 871 CACT-AAGGCTCTGATAGAAGATCTTCAA 898
|| | || ||||||| ||||||||||||
Sbjct 905 CA-TGAAAACTCTGATCGAAGATCTTCAA 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51841639704
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5