BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472616
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23530.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1288 0.0
> AT1G23530.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G70470.1);
Has 38 Blast hits to 38 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:8345595-8346651
FORWARD LENGTH=1057
Length=1057
Score = 1288 bits (697), Expect = 0.0
Identities = 919/1017 (90%), Gaps = 52/1017 (5%)
Strand=Plus/Plus
Query 25 ACTACTAATACATTACCCCTACTCTCACATGGAATGAAGCATATTCACATTTCTTGTTTC 84
|||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 64 ACTAATAATGCATTACCCCTAATCTCACATGGAATGAAGCATATTCACATTTCTTGTTTC 123
Query 85 ACAAGTACCTTCTCAATAACCCTCCTTGATCTCTACTCAAGGAACACCACAAGA-T-A-- 140
||||||||||||| | ||||||||||||||||||||||||||||| |||||| | | |
Sbjct 124 ACAAGTACCTTCTGAGTAACCCTCCTTGATCTCTACTCAAGGAACTCCACAAAAATTAAA 183
Query 141 -TCTCA-A-CTCCAACATCTTCTTATAAC---T---GATTTATCTTTAAGATCGAATCAA 191
||||| | |||||||||||||||||||| | ||||||||||||||| | || |||
Sbjct 184 ATCTCACAACTCCAACATCTTCTTATAACACGTCTTGATTTATCTTTAAGAACCAAACAA 243
Query 192 ACAAAAACAAAAGCCTAGGAGAGAAAATGGGAGATCAAGGAGTACAACAGATGCAGCAGC 251
| ||| ||||| ||||| |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 244 A-AAAC-CAAAA-CCTAGAAGAGAAAATGGGAGATCAAGGAGTACAACAAATGCAACAGC 300
Query 252 CTATTGTTGTGTATCCAAACGCTTACAATAAACAGTATCCAGACCCATCTTCTTCTAAAA 311
|||||||||||||||||||||||||||||||||||||||||||||| | | || | ||||
Sbjct 301 CTATTGTTGTGTATCCAAACGCTTACAATAAACAGTATCCAGACCC-T-T-CTAC-AAAA 356
Query 312 AACCTTCTTCTTCCTCCGGTTCAAGCGGAAACTTTGGGACGGTCTTCATAGTCCTAGCCG 371
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 357 --CCTTCTTCTTCCTCTGGCTCAAGCGGAAACTTTGGGACGGTCTTCATAGTCCTAGCCG 414
Query 372 TTATCTTTGTCTTGTCGGCTCTGGCTTGTGTCTTTGGCAGGCTATGTAACCGTGAAAGCC 431
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 415 TGATCTTTGTCTTGTCGGCTCTTGCTTGTGTCTTTGGAAGGCTATGTAACCGTGAAAGCC 474
Query 432 GTGCGGCTAAGCAGCAACATAGCAAGCATCCAAAGCATGAGAAAGCTTCTTCCAAGAAGA 491
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 475 GCGCGGCTAAGCAGCAACATAGCAAGCATCCGAAGCATGAGAAAGCTTCTTCCAAGAAGA 534
Query 492 GCCGTGAGATTCGTCCTGTGGAGCGTGAGCCGAGGGAGAGAGGTGATATGGAGTTTGGGT 551
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 535 GCCGTGAGATTCGGCCTGTGGAGCGTGAGCCGAGGGAGAGAGGTGATATGGATTTTGG-T 593
Query 552 TT-GATATGAAACGGCCTGAGCCAATTGAGAAACCTTCTGGAAGAGACGAAGAAAGACAT 610
|| ||||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 594 TTCGATATGAAACGGCCTGAACCAATTGAGAAACCTTCTGGAAGAGACG--GA--G---- 645
Query 611 AGAGAGGACATAGAAATCGGATTTGATAACAAGAGAGGAGAAAGAGGC-G-GA-GGCGGA 667
|||||||||||||| |||| ||||||||||||||||| ||||||||| | || ||||||
Sbjct 646 -GAGAGGACATAGAATTCGGGTTTGATAACAAGAGAGGTGAAAGAGGCCGCGAAGGCGGA 704
Query 668 GGCCGAGGAGGACCACCTCCACCGAGTATCAAACATGCAGTGAGGTTCAAGCTACCGGAA 727
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 705 GGCGGAGGAGGACCACCTCCACCGAATATCAAACATGCAGTGAGGTTCAAGCTACCGGAA 764
Query 728 AATGGAGAACATCATTCTAAAGGAGAGATCATACGTGGAGGTCCTGACTTCGAGTTCCGA 787
|||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 765 AATGGAGATCATCATTCTAAAGGAGAGATCAGACGTGGAGGTCCTTCCTTCGAGTTCCGA 824
Query 788 CCAGGACACTAATGATCTTAATTTGTCTAAGAACAAA-CTACTTTATGTTTATGTCTTAA 846
|||||||||||||||||||||||||| |||||||||| | |||| || ||||||| |
Sbjct 825 CCAGGACACTAATGATCTTAATTTGTTTAAGAACAAATC-ACTTGAT----ATGTCTTTA 879
Query 847 TTGCTTCCTCActtttatttcttttgtgccttttt-cttttctggtttgattcgttttcc 905
|| |||||||||||| ||||||||||||| ||||| ||||||||||| ||||| || |
Sbjct 880 TTACTTCCTCACTTTCATTTCTTTTGTGCTTTTTTTCTTTTCTGGTT-GATTC-TT--C- 934
Query 906 ttcttATTGGTATGGATCTTAGAGCTGAAGCTATCAAACTTCTCAT-AGTCTCTTGGTGT 964
|| || |||||||| ||||| |||||||||||||||||||| || |||||||||||||
Sbjct 935 TT---ATGGGTATGGAACTTAGTGCTGAAGCTATCAAACTTCTTATTAGTCTCTTGGTGT 991
Query 965 GATGTATAAAGTAGACTCTCTACATATCAAAGGTACTAAATAAAATCCATAATATTT 1021
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GATGTATAAAGTCGTCTCTCTACATATCAAAGGTACTAAATAAAATCCATAATATTT 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5