BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472619
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23560.1 | Symbols: | Domain of unknown function (DUF220) |... 1888 0.0
AT1G23550.1 | Symbols: SRO2 | similar to RCD one 2 | chr1:83507... 211 1e-53
> AT1G23560.1 | Symbols: | Domain of unknown function (DUF220)
| chr1:8352615-8354262 REVERSE LENGTH=1303
Length=1303
Score = 1888 bits (1022), Expect = 0.0
Identities = 1203/1290 (93%), Gaps = 13/1290 (1%)
Strand=Plus/Plus
Query 1 ATAATCTTTGATTAATCAAACCTTTCTCTATGTGTTTTTCCCTCAAACCACATCGTTGAC 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAACCTTTGATTAATCAAACCTTTCTCTATGTGTTTTTCCCTCAAACCACATCGTTGAC 60
Query 61 TTTGATCTCTCATTGTCATCTTGCTCTGTTTTTGTAACCTATTTTTGCAGAAACAAGATG 120
|| |||||||||||||||||||| ||||||||||| ||||| |||| ||||||||| |||
Sbjct 61 TTGGATCTCTCATTGTCATCTTGTTCTGTTTTTGTGACCTAATTTTACAGAAACAAAATG 120
Query 121 GGTGGATCTGAAATTTCAAGATCAGAGGAGAAGAGCGGTATCGGTTTCGTTAAATTGTTT 180
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GGTGTATCTGAAATTTCAAGATCAGAGGAGAAGAGCGGTATAGGTTTCGTTAAATTGTTT 180
Query 181 GAAAATAATC-TTGTGCTTCCTGGATTTTTGGTATGGATGAATCAAACAATTCAAGAGCC 239
|||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAAATAA-CGTTGTGTTTCCTGGATTTTTGGTATGGATGAATCAAACAATTCAAGAGCC 239
Query 240 TATTAAGGCTGAGTT-AAAGAGATTAAGGAATGTTAAAGAGCTAGGCTTGGTTAAGTCGG 298
| ||||||||||||| ||| |||||||||||||| ||||||||| | || | ||||| |
Sbjct 240 TCTTAAGGCTGAGTTCAAA-AGATTAAGGAATGTGAAAGAGCTAAG-TT--TGAAGTCAG 295
Query 299 TGTCAAAGATAGAGACTATTTATGATGAGCATAGAGATGAAGAAAAGTTAGAGAAGCAAC 358
||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||
Sbjct 296 TGTCAAAGATAGAGACTGCTTATGAGGAGCATAGAGATGAAGAGAAGTTAGAGAAGCAAT 355
Query 359 TACAAGCTTGGAGAGACAATCCTTCATGGATAGATCAACCTCCTAAAGTGGTGGTGAAAT 418
|||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 356 TACAAGCTTGGAGAGATAATCCCTCATGGATAGATCAGCCTCCTAAAGTGGTGGTGAAAT 415
Query 419 CACAAAATGGTTTGTTTTGCCATCTGAACGTTGAAGCAGACGTAGGATTGCCTCCTGAAC 478
||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 416 CACAAAATGGTTTGTTTTGCCATTTAAACATTGAAGCAGACGTAGGATTGCCTCCTGAAT 475
Query 479 TAGTCTACAACATTTTCACTCATCCAGACAACAAAAGATACTTCAAAAACATCAAGGAAA 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TAGTATACAACATTTTCACTCATCCAGACAACAAAAGATACTTCAAAAACATCAAGGAAA 535
Query 539 ACATATCGAGAAAAGTTTTGATCAG-CGAAGGGCTAAAGCAGACTGTGGAGGTGAAGCAA 597
||||||| ||||||||||||||| | |||||||| ||||||||| ||||| |||||||||
Sbjct 536 ACATATCAAGAAAAGTTTTGATC-GACGAAGGGCCAAAGCAGACCGTGGAAGTGAAGCAA 594
Query 598 GCCGCGGCCTGGAAGTTCCTTTGGTGGGCTGGAACTTGCCCTATACATCTCATTGTCGAA 657
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 595 GCCGCGGCCTGGAAGTTCCTTTGGTGGGATGGAACTTGTCCTATACATCTCATTGTCGAA 654
Query 658 GAAAACCGGAAAAATCTCACTTCAAAATATAAGCAAGAGACAACAATGTTCATGAAAGTA 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GAAAACCGGAAAAATCTCACTTCAAAATATAAGCAAGAGACAACAATGTTCATGAAAGTG 714
Query 718 TTTGAAGGTTGTTGGAAAGTTGAACCATTATTTATAGACGAACATTTGTGTGAGCGCTCA 777
||||| |||||||||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 715 TTTGAGGGTTGTTGGAAAGTGGAGCCATTGTTTATAGACGAACATTTGTGTGACCGCTCA 774
Query 778 AAGCCAAAATCTCAAGAAGATTACCATAGCTGTAGCAACGGACGAGGAAGGATCGGATCG 837
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAGCCAAAATCTCAAAAAGATTACCATAGCTGTAGCAACGGACGAGGAAGGATCGGATCA 834
Query 838 AAGGTGACAATGGATCAAATGTTTCAGCCTTCTGCTCTTCTTACTCCACCACCACTTTCT 897
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 835 AAGGTGACAATGGATCAAATGTTTCAGCCTTCAGCTCTTCTTACTCCCCCGCCACTTTCT 894
Query 898 TGGTACATACGTGGGATCACTATTAAAACCACAGAGAGTATGATCGAAGATCTATTCGCT 957
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 895 TGGTACATACGTGGGATCACCATTAAAACCACAGAGAGTATGATCGAAGATCTTTTCGCT 954
Query 958 GAAGCTAGTAGACTTCGGGGAGGAAAAGGAGGAGGCTATATTGCTGATCAAGAAGAAAAC 1017
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 955 GAAGCTACTAGACTTCGGGGAGGAAAAGGAGGAGGCTATATTGATGATCAAGGAGAAAAC 1014
Query 1018 AACGTCGTATTCGAGAAGAGCAAAGCTGATGACATTAAGGAAAGATGGAGATCGCATAGG 1077
|| || ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1015 AATGTGGTAACCGAAAAGAGCAAAGCTGATGACATTAAGGAAAGATGGAGATCACATAGG 1074
Query 1078 AGAACTAAGCGGAGGAGATTTACTAA-TCCTAGGACAATGTAATTAAAGAGATTGTGGTT 1136
|||| ||| |||||||||||||| || | ||||| |||||||||| |||||| |||| ||
Sbjct 1075 AGAAGTAAACGGAGGAGATTTAC-AACTGCTAGGTCAATGTAATTGAAGAGACTGTGATT 1133
Query 1137 TTGGAACTTCTTGATTGTTCTGGAAATTTGTAACT-TTCAAGCTCTTTACAAGTTTCCCA 1195
| ||| ||||||||| ||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 1134 CTAGAATTTCTTGATTATTCTGGAGATTTGTAA-TGTTCAAGCTCTTTACAAGTTTCCCA 1192
Query 1196 AAAGAGATCCTCTGTTTTCACCACTAACAGAAACTATACCTTCCAATAGGaaaaaaaaaT 1255
|||| ||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||
Sbjct 1193 AAAGGGATCCTCTGTTTTTACCACTAACGGAAACTACACCTTCCAATAGAAAAAAAAAAT 1252
Query 1256 GCATTAAATCTCTCATATAGTTCCTTCCAC 1285
|||| |||||||||||||||||||||||||
Sbjct 1253 GCATCAAATCTCTCATATAGTTCCTTCCAC 1282
> AT1G23550.1 | Symbols: SRO2 | similar to RCD one 2 | chr1:8350793-8352791
FORWARD LENGTH=1351
Length=1351
Score = 211 bits (114), Expect = 1e-53
Identities = 143/157 (91%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 1130 TGTGGTTTTGGAACTTCTTGATTGTTCTGGAAATTTGTAACT-TTCAAGCTCTTTACAAG 1188
|||| || | ||| ||||||||| ||||||| |||||||| | |||||||||||||||||
Sbjct 1351 TGTGATTCTAGAATTTCTTGATTATTCTGGAGATTTGTAA-TGTTCAAGCTCTTTACAAG 1293
Query 1189 TTTCCCAAAAGAGATCCTCTGTTTTCACCACTAACAGAAACTATACCTTCCAATAGGaaa 1248
||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||| |||
Sbjct 1292 TTTCCCAAAAGGGATCCTCTGTTTTTACCACTAACGGAAACTACACCTTCCAATAGAAAA 1233
Query 1249 aaaaaaTGCATTAAATCTCTCATATAGTTCCTTCCAC 1285
||||||||||| |||||||||||||||||||||||||
Sbjct 1232 AAAAAATGCATCAAATCTCTCATATAGTTCCTTCCAC 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63202486155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5