BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472628
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23670.2 | Symbols: | Domain of unknown function (DUF220) |... 1443 0.0
> AT1G23670.2 | Symbols: | Domain of unknown function (DUF220)
| chr1:8373286-8375868 REVERSE LENGTH=977
Length=977
Score = 1443 bits (781), Expect = 0.0
Identities = 889/940 (95%), Gaps = 11/940 (1%)
Strand=Plus/Plus
Query 1 TCGTTTGCTCTTGTTTTTATCAGGTAAGCATCATTTGTAGACTACATTTTCAGAGAGAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TCGTTTGCTCTTGTTTTTATCAGGTAAGCATCATTTGTAGACTACATTTTCAGAGAGAAA 62
Query 61 TGGGTATATTTCCTGGTTTGATTAATCAGAACACACAACAGCCTCCAGAGGTCCAGTCCA 120
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 63 TGGGTATATTCCCTGGCTTGATCAATCAGAACACACAACAGCCTCCAGAGGTCGAGTCCA 122
Query 121 AGAAATCTGGGAATGTTAAACCTAAGTCAGTGTCAGAGACTTATCCTGAGGACAGACAAG 180
||| |||| ||||||||||| ||||||||||||| ||||||||||| ||| ||||| |||
Sbjct 123 AGAGATCTAGGAATGTTAAAACTAAGTCAGTGTCTGAGACTTATCCAGAGAACAGAGAAG 182
Query 181 AATTAAAGAAGCAACTAAAACTTTGGAGAGCTTCAGAGAAGGATTCTGCATGGTATGATT 240
|||||||||||||| |||||||||||||||||||||| ||| | ||| ||||||||||||
Sbjct 183 AATTAAAGAAGCAATTAAAACTTTGGAGAGCTTCAGATAAGAAATCTCCATGGTATGATT 242
Query 241 ATCCTCCTAAA-TTGAAGGTGACAAAGGAAAAGGATCTTTACCATTTGAACATGAAATTT 299
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 243 ATCCTCCTAAAGTT-AAGGTGACAAACGAAAAGGATCTTTACCATTTGAACATGAAATTT 301
Query 300 ACAATAGGATTGCCTCCTGAAGCAGTCTTCGATATACTCACTAGTTATGAGAACCCATCA 359
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 302 ACAATAGGATTACCTCCTGAAGCAGTCTTCGATATACTCACTACTTATGAGAACCCATCA 361
Query 360 TATTTCACAATGATGAAAAAAG-G-GAAGCCCCAGGAACACGTATCAAGTAAGGTTTTTA 417
|| |||||||||||| |||||| | || | | |||||||||||||||||| |||||||
Sbjct 362 TACTTCACAATGATG-AAAAAGCGCCAA-ACTCTGGAACACGTATCAAGTAAAGTTTTTA 419
Query 418 GCGATCTTGGACTGACAGAGAAGCACGTGAGGGTGGAAAAAGCTGCTCCCTGGAGGTTCC 477
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCGATCTTGGACCGACAGAGAAGCACGTGAGGGTGGAAAAAGCTGCTCCCTGGAGGTTCC 479
Query 478 TTTGGTGGTCTGGATCTATCCCGGTACATCTAACTTTCAATGAGAGTCGAAAAGATTTCA 537
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 480 TTTGGTGGTCTGGATCTATCCCGGTACATCTAACTTTCAATGAGAGCCGGAAAGATTTCA 539
Query 538 GCCCACTATATATGATTCCGAAAAAGAACGTGATGTTCATGAAAAGGTTCTATGGTAAGT 597
|| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GCACACTATATATGATTCCTAAAAAGAACGTGATGTTCATGAAAACGTTCTATGGTAAGT 599
Query 598 GGCAAATAGAGCCATGGTACGTAGATAACATGCGCTTTTGCAAGCCTAGGCTCCCAAAGA 657
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 GGCAAATAGAGCCATGGTACGTAGATAACATGCGCTTTTGCAAGCCGAGGCTCCCAAAGA 659
Query 658 ATCGAGAAGAATATAGACAGTGTACTGGTGGAAAAGGATTGATTGGCTCGAGAGTGACAT 717
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 ATCGAGAAGAATATAGACAATGTACCGGTGGAAAAGGATTGATTGGCTCGAGAGTGACAT 719
Query 718 TGGACCAGTCTTTTCAGCCTTCTTCTTATCTTAACCTGCCACCGA-TTTCTTGGTACATC 776
||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 720 TGGACCAGTATTTTCAGCCTTCTTCTTATCTTAACCTGCCACC-ACTTTCTTGGTACATC 778
Query 777 CGTAGGGCCACAGTCAAGACCACCAAGGCTCTAGTCGAAGATCTTCAAATTCAGGCCGCC 836
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 779 CGTAGGGCCACCGTCAAGACCACCAAGGCTCTAATCGAAGATCTTCAAATTCAGGCCGCC 838
Query 837 GTTATCAGAAGCGTTTGAAACTCTTTCCAATCCGATATTTGCTAGTTACGCCATTTTTAT 896
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 839 GTTATCAGAAGCGTTTGAAACTCTTTCCAATCCGATATTTGCTAGTTATACCATTTTTAT 898
Query 897 ACAAACATTAATCTCAAATAATATTGGAATACTGTAAAAA 936
||||||||||| |||||||| | | |||||||||||||||
Sbjct 899 ACAAACATTAACCTCAAATA-T-T-GGAATACTGTAAAAA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5