BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472633
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23710.1 | Symbols: | Protein of unknown function (DUF1645)... 1437 0.0
AT1G70420.1 | Symbols: | Protein of unknown function (DUF1645)... 137 2e-31
> AT1G23710.1 | Symbols: | Protein of unknown function (DUF1645)
| chr1:8385251-8386426 FORWARD LENGTH=1176
Length=1176
Score = 1437 bits (778), Expect = 0.0
Identities = 1021/1129 (90%), Gaps = 53/1129 (5%)
Strand=Plus/Plus
Query 1 AAGAGTAACGGTGAGGTTTGGATCTAATCG-ATCAACGATGGAGGTTGCTTTTCCATCTT 59
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 75 AAGAGTAACGGTGAGGTTTGGATCTAATCGAATCAACGATGGAGGTTGCTTTTCCATCTT 134
Query 60 CACCGCCGGCGAAATGCATCGGTGATGACCGATTAACCGAAATTTCCATAGATTTCACCA 119
| ||||||| ||||||||||| ||||| ||||||| || || ||||| ||||||||||
Sbjct 135 CGCCGCCGGTGAAATGCATCGCCGATGAAAGATTAACAGAGATCTCCATGGATTTCACCA 194
Query 120 AATTAGGATTCCCAGAAG-A-A-GAAGAAATTAAAAAATTGGAAAGATCGTGGAGTCAA- 175
|||||||||||||||||| | | |||||||||||||||||||| |||||||||||| ||
Sbjct 195 AATTAGGATTCCCAGAAGAAGATGAAGAAATTAAAAAATTGGAGAGATCGTGGAGT-AAG 253
Query 176 CTcgaagaatccgtcgaatttaacgaagacgaagacgatgaagaagatgaagaagaagaa 235
||||||||||||||||||||| | ||||||||||| | | | ||||||||||||
Sbjct 254 CTCGAAGAATCCGTCGAATTT-----A-ACGAAGACGAT---G-A-A-GAAGAAGAAGAA 301
Query 236 gaGTTTTCGTTTGCTTGTGTAAACGGAGAAGGATCTCCAATAACAGCTGATGAAGCTTTC 295
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 302 GAGTTTTCGTTTGCTTGTGTAAACGGAGAAGGATCTCCAATTACCGCTGATGAAGCTTTT 361
Query 296 GAAGATGGTCAGATCCGTCCTGTGTTTCCTCTGTTTAACCGCGATCTTCTTTTCGATTAC 355
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 362 GAAGATGGTCAGATCCGTCCTGTGTTTCCTCTGTTTAACCGTGATCTTCTCTTCGAGTAC 421
Query 356 GAAAACGACGATGACAAAAGCGACGACGTTTCGGTCACCGACGAGAACAGACCACGTCTT 415
|||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 422 GAAAACGAAGATGACAAAAACGACAACGTTTCGGTCACCGACGAGAACAGACCGCGTCTT 481
Query 416 CGAAAATTATTTGTTGAGGATCGTAACGGTGACGGTGACGGCGAAGAGACGGAGGATTCT 475
||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||||
Sbjct 482 AGAAAATTATTTGTTGAGGATCGTAACGGTAACGGTGACGGAGAGGAGACGGAGGGTTCT 541
Query 476 GAGAAAGAACCGTTAGGACCGTATTGTTCTTGGTCAGGTGGAACCGTTGCGGAAGCGTCG 535
|||||||||||||| |||||||||||||| ||| |||| ||||| ||||| |||||||||
Sbjct 542 GAGAAAGAACCGTTGGGACCGTATTGTTCGTGGACAGGAGGAACGGTTGCAGAAGCGTCG 601
Query 536 CCGGAGACTTGCCGGAAAAGTAACTCGACGGGATTTTCTAAGCTTTGGAGATTTAGAGAT 595
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 602 CCGGAGACTTGCCGGAAAAGTAATTCGACGGGATTCTCAAAGCTTTGGAGATTTAGAGAT 661
Query 596 CTTGTTTTGAGAAGTAACAGTGATGGAAGAGACGCGTTTGTTTTCTTGAGTAATAATAAC 655
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 662 CTTGTTTTGAGAAGTAACAGTGATGGAAGAGACGCGTTTGTTTTCTTGAATAATAGTAA- 720
Query 656 AACGTCGGTGACAAGACTAGGACTCGGTCTTCTTCGTCGTCGTC-T--ACGGCGGCGGAG 712
| | |||||||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 721 ----T-G---ACAAGACTCGGACTCGGTCTTCTTCGTCGTCGTCGTCTACGGCGGCGGAG 772
Query 713 GAGAATGATAAGAAGGTAATAATAACAGAGAAGAAAAAGGGGAAGGAGAAAACAACGACG 772
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 773 GAGAATGATAAGAAGGTAATAA---CAGAGAAGAAAAAGGGGAAGGAGAAAACTTCGACG 829
Query 773 TCG--G-AGGCGAAGAAGAAGACGATGACGA--AA-TCGGCGCATGAGAAGCTTTACATG 826
||| | || ||||||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 830 TCGTCGGAGACGAAGAAGAAGACGACGACGACTAAATCGGCGCATGAGAAGCTATACATG 889
Query 827 AGAAACAGAGCGATGAAGGAAGAAGTGAAACACAGATCGTATCTTCCGTACAAACAAGTT 886
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AGAAACAGAGCGATGAAGGAAGAAGTGAAACACAGATCGTATCTTCCGTACAAACAAGTC 949
Query 887 GGGTTCTTCACTAATGTGAATGGTCTTAGCAGAAATATTCATCCTTTCTGACCaaaaaaa 946
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 950 GGGTTCTTCACTAATGTGAATGGTCTTAGCAGAAATATTCATCCTTTCTGAC-AAAAATA 1008
Query 947 aaaaaCTAAGTTTGGTTTTTGGGTGAttttttttttttttttttGGGTTATATaaaaaaa 1006
|||| ||||||||||||||||||||||||||||| |||||| || |||| ||||||||
Sbjct 1009 AAAAT-TAAGTTTGGTTTTTGGGTGATTTTTTTTTGTTTTTT--GG-TTATGTAAAAAAA 1064
Query 1007 G--TT-AATTTAGTACTCTTCGTATGGG-TGACTACTGTTTGGTAGATTTGGA-TTTTAA 1061
|| ||||||||||||||| | |||| | ||| ||| |||||||||| | | ||||||
Sbjct 1065 AAATTTAATTTAGTACTCTTCTT-TGGGGTCACTTCTGCTTGGTAGATT-GAAATTTTAA 1122
Query 1062 ATGATAGCAGAAAGGTGTACTGttttttttttCACTATTTTCTGGTGTT 1110
||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1123 ATGATTGCAGAAAGGTGTACTGTTTTTTTT--CACTATTTTCTGGTGTT 1169
> AT1G70420.1 | Symbols: | Protein of unknown function (DUF1645)
| chr1:26539574-26540762 REVERSE LENGTH=1189
Length=1189
Score = 137 bits (74), Expect = 2e-31
Identities = 122/145 (84%), Gaps = 3/145 (2%)
Strand=Plus/Plus
Query 497 TATTGTTCTTGGTCAGGTGGAACCGTTGCGGAAGCGTCGCCGGAGACTTGCCGGAAAAGT 556
|||||||| ||| || | | || || | | |||| || || |||||||| |||||||||
Sbjct 513 TATTGTTCATGGACAAATCGTACGGTGGAGCAAGCATCACCAGAGACTTGTCGGAAAAGT 572
Query 557 AACTCGAC-GGGATTTTCTAAGCTTTGGAGATTTAGAGATCTTGTTTTGAGAAGTAACAG 615
||||| || ||| || || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 573 AACTCAACAGGG-TTCTCAAAGCTATGGAGATTTAGAGATCTTGTTTTGAGAAGTAACAG 631
Query 616 TGATGGAAGAGACGCGTTTGT-TTT 639
|||||||| ||| |||||||| |||
Sbjct 632 TGATGGAAAAGATGCGTTTGTGTTT 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54467591325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5