BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472635
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23740.1 | Symbols: | Oxidoreductase, zinc-binding dehydrog... 1884 0.0
> AT1G23740.1 | Symbols: | Oxidoreductase, zinc-binding dehydrogenase
family protein | chr1:8398115-8399749 REVERSE LENGTH=1384
Length=1384
Score = 1884 bits (1020), Expect = 0.0
Identities = 1278/1397 (91%), Gaps = 39/1397 (3%)
Strand=Plus/Plus
Query 1 CCAATCAAAGAAAGCCACGAAACAGAGTATTTTAAAAACAGAGGAAAGCGAAAGAGATAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCAATCAAAGAAAGCCACGAAACAGAGTATTTTAAAAACAGAGGAAAGCGAAAGAGATAA 60
Query 61 GCC-----G-------T--TTG--GAC--AAAAATGAACACAGCGCTTGCAACAACCACC 102
||| | | | | ||| |||||||||| ||||||||||||||||||||
Sbjct 61 GCCTTTTAGACAAAACTAGTGGCAGACTGAAAAATGAACGCAGCGCTTGCAACAACCACC 120
Query 103 GCCACAACTCCTGTACTCCGCCGTGAGACGCCTCTTCTTCATCATTGTTCTCTCACAACA 162
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 GCCACAACTCCCGTACTCCGCCGTGAGACGCCTCTTCTTCATTATTGTTCTCTCACAACA 180
Query 163 AAATCTCCGGTTTTCC-GATCAAACGGAGTTAGATTCGGATCTTGCGTGCAAAAAGTCAG 221
||||| ||||||| || ||| ||| ||||||||||||||||||||||||||| ||||||
Sbjct 181 AAATCGCCGGTTTACCAAATC-AACAGAGTTAGATTCGGATCTTGCGTGCAAACAGTCAG 239
Query 222 CAAGAAATTTTTGAGAATCTCTGCGAGCTCTCAGAGTACTTCAGCGGCGGTAAATGTCAC 281
||||||||| |||| |||||| |||||||||||||| ||||||||||||| ||||||||
Sbjct 240 CAAGAAATTCTTGAAAATCTCGGCGAGCTCTCAGAGCGCTTCAGCGGCGGTCAATGTCAC 299
Query 282 GGCGGATGCGTCGATTCCGAAAGAGATGAAGGCGTGGGTGTATAGTGAGTACGGCGGAGT 341
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 GGCGGATGCTTCGATTCCGAAAGAGATGAAGGCGTGGGTGTATAGTGACTACGGCGGAGT 359
Query 342 TGATGTTTTGAAGCTGGAGAGTGACATCGCTGTGCCGGAGGTTAAAGAAGATCAGGTTTT 401
||||||| |||||||||||||| |||| | |||||||||| |||||||||||||||||||
Sbjct 360 TGATGTTCTGAAGCTGGAGAGTAACATTGTTGTGCCGGAGATTAAAGAAGATCAGGTTTT 419
Query 402 GATTAAAGTTGTTGCGGCGGCTCTTAATCCCGTTGACGCTAAGAGACGTCAAGGGAAATT 461
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 420 GATTAAAGTTGTTGCGGCGGCTCTTAATCCCGTCGATGCTAAGAGACGGCAAGGGAAATT 479
Query 462 CAAAGCCACCGATTCACCTCTTCCGACTGTTCCGGGATACGATGTTGCCGGAGTAGTGGT 521
|||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 480 TAAAGCCACTGATTCGCCTCTCCCGACTGTTCCGGGATACGACGTTGCCGGAGTAGTGGT 539
Query 522 GAAAGTTGG-TGCTGCGGTGAAGGATTTTAAAGAAGGAGATGAAGTTTACGCTAACGTGA 580
|||||| || | ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 540 GAAAGTGGGAAG-TGCGGTGAAGGATTTGAAAGAAGGAGATGAAGTTTATGCTAACGTGA 598
Query 581 GCGAGAAAGCATTGGAAGGTCCGAAGCAATTCGGTTCTTTAGCGGAGTACACGGCGGTGG 640
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||
Sbjct 599 GCGAGAAAGCATTGGAAGGTCCAAAGCAGTTTGGTTCTTTAGCGGAGTACACGGCCGTGG 658
Query 641 AAGAGAAGTTATTAGCTTTAAAACCTAAAAACATCGATTTCGCGCAAGCCGCAGGGCTTC 700
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 659 AAGAGAAGTTATTAGCTTTAAAACCTAAAAACATCGATTTTGCGCAAGCTGCAGGGCTTC 718
Query 701 CATTGGCGATAGAAACCGCTGATGAAGGTCTAGTTAGGACTGAATTCTCCGCCGGAAAGT 760
| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 719 CGTTGGCGATAGAAACCGCTGATGAAGGTTTAGTTAGGACTGAATTCTCAGCCGGAAAGT 778
Query 761 CGATTCTTGTTCTTAATGGTGCTGGAGGAGTAGGGAGCCTTGCGATTCAGTTGGCGAAGC 820
| |||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 779 CAATTCTTGTTCTTAATGGTGCCGGAGGAGTAGGGAGTCTTGTGATTCAGTTGGCGAAGC 838
Query 821 ATGTGTATGGAGCTTCAAAAGTGGCTGCCACAGCGAGTACTGGGAAGCTAGAGCTAGTGA 880
| |||||||||||||||||||| ||||| || |||||||| | ||||||||||||||||
Sbjct 839 ACGTGTATGGAGCTTCAAAAGTAGCTGCAACTGCGAGTACAGAAAAGCTAGAGCTAGTGA 898
Query 881 GAAGCTTAGGTGCTGATTTAGCTATTGATTACACAAAGGAGAACATAGAAGAGTTGCCTG 940
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 899 GAAGCTTAGGTGCTGATTTAGCTATTGATTACACAAAGGAGAATATAGAAGACTTGCCTG 958
Query 941 ACAAGTACGATGTTGTCTTTGACGCCATTGGGATGTGTGATAAGGCAGTGAAGGTGATTA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACAAGTACGATGTTGTCTTTGACGCCATTGGGATGTGTGATAAGGCAGTGAAGGTGATTA 1018
Query 1001 AGGAAGGAGGGAAAGTTGTGGCATTGACCGGAGCTGTCACCCCGCCTGGTTTTAGATTCG 1060
|||||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||||
Sbjct 1019 AGGAAGGAGGGAAAGTTGTGGCATTGACTGGAGCTGTCACGCCTCCTGGTTTTCGATTCG 1078
Query 1061 TTGTGACATCTAACGGCGATGTTTTGAAGAAATTTAACCCATACATTGAGAGTGGGAAGG 1120
|||| |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1079 TTGTTACATCTAATGGCGATGTTTTGAAGAAACTTAACCCATATATTGAGAGTGGGAAGG 1138
Query 1121 TGAAGCCTGTGGTTGATCCCAAAGGACCGTTCCCTTTCTCACGCATCGCTGATGCTTTCT 1180
|||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |
Sbjct 1139 TGAAGCCTGTGGTTGATCCCAAAGGACCGTTCCCATTCTCACGCGTTGCTGATGCTTTTT 1198
Query 1181 CATACTTAGAAACAAACCATGCCACGGGGAAGGTCGTTGTTTATCCCATCCCTTGAGGGA 1240
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct 1199 CATACTTAGAAACGAACCATGCCACAGGGAAGGTCGTTGTTTATCCCATTCCTTAAGGGG 1258
Query 1241 CTGGCTTGAGTGTAGTAGCC-----CTATCTATGTGTATAAGCTAAGCAAGTGTCAAAAG 1295
|||||||||||||||||||| |||||||||||||||||| | | | ||| |
Sbjct 1259 CTGGCTTGAGTGTAGTAGCCTTTATCTATCTATGTGTATAAGC-AT--A-G---CAA--G 1309
Query 1296 TGTTATAATCTCTTTGTAAACTCAATGAGGGTGGAAATAAAAATAAAAGCTCTTTAAAGC 1355
|||||| |||||||||| | ||||||||||||||||||| |||| ||||||||||||
Sbjct 1310 TGTTATCTTCTCTTTGTAT--T-AATGAGGGTGGAAATAAAAGTAAATGCTCTTTAAAGC 1366
Query 1356 TTTATTCATTTCTTTTG 1372
||||||||||||| |||
Sbjct 1367 TTTATTCATTTCTATTG 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5