BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472637
Length=1990
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23760.1 | Symbols: JP630, PG3 | BURP domain-containing prot... 2852 0.0
AT1G70370.1 | Symbols: PG2 | polygalacturonase 2 | chr1:2651272... 1002 0.0
AT1G60390.1 | Symbols: PG1 | polygalacturonase 1 | chr1:2224747... 292 7e-78
> AT1G23760.1 | Symbols: JP630, PG3 | BURP domain-containing protein
| chr1:8402046-8404301 FORWARD LENGTH=2119
Length=2119
Score = 2852 bits (1544), Expect = 0.0
Identities = 1812/1943 (93%), Gaps = 12/1943 (1%)
Strand=Plus/Plus
Query 27 CTCAACAAAAATGCTCAAA-AATTTTGTCTTTCTCCTACCCTTCTTGTCGCGTCTCTTCC 85
|||||||||||||| |||| || ||||| ||||| || || |||||||| ||||||| ||
Sbjct 87 CTCAACAAAAATGCGCAAACAA-TTTGTTTTTCTTCTGCCTTTCTTGTCACGTCTCTACC 145
Query 86 ATGTAGTTATGGCCGGAGGAGAACGGTTAACTAACGGCGGTTTTTCGCCGGAGATGAATC 145
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 146 ATGTAGTTATAGCCGGAGGAGAACGGTTAACTAACGGCGGTTTTTCACCGGAGATAAATC 205
Query 146 CGTTCACACCCAAAGCATCTTTAGTACGTTACTGGAACAAACAGATCCAACACCAATCAC 205
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 206 CGTTCACACCCAAAGCGTCTTTAGTACGTTACTGGAACAAACAGATCCATCACCAATCAC 265
Query 206 CAGGCTCAGCCTTTCTCCTCTCCAAGGCTTCACCACTTACCGCTGTCGCCTCCGCCACTT 265
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 266 CCGGCTCAGCCTTTCTCCTCTCCAAGGCTTCACCACTTACCGCCGTCGCCTCCGCCACCT 325
Query 266 TCGCAAAACTCGCCTCTGAAAACGCTCTTCCGGATCGCCTACCGGACTTTTGCTCCGCGG 325
|||| ||||||||||| ||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 326 TCGCCAAACTCGCCTCCGAAAACGCTCTTCCGGATCGCCTCCCCGACTTCTGCTCCGCCG 385
Query 326 CAAACCTCTTCTGTTTTCCAGATTTAGGTCCAACCCTCGAGAAACACAGCAACGACGTTA 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 CAAACCTCTTCTGTTTTCCAGATTTAGGTCCAACCCTCGAGAAACACAGCAACGACGTTA 445
Query 386 AATTCTCTGTTTATGATCAACGAAACTTCACCAACTACGGCGGCACGATTCACCCCGGCG 445
||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 446 AATTCTCTGTTTACGACCAACGAAACTTCACCAACTA---CGGCACGATTCACCCCGGCG 502
Query 446 GTGCTGATTCGTTCAAGAAATATTCACAAAACGGCAACGTAGTAACCGACTCTTTCCGGC 505
||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 503 GTGCTGACTCGTTCAAGAAATATTCACAAAACGGTAACGCAGTAACCGACTCTTTCCGGC 562
Query 506 GATACAGCCGTGACGCCGCCGGTCACGAAGATAAGTTCACAGGCTACGCCGATAACAGCA 565
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 563 GATACAGCCGAGACGCCGCCGGTCACGAAGATAAATTCACAGGCTACGCTGATAACAGCA 622
Query 566 ACGTCGTTGAGGAAAACTTTAATTCTTACGGCACGTCAGCCACCGGTGGCTCCGGCGATT 625
||||||| |||||||| || |||||||||||||| ||||||||||| |||||||||||||
Sbjct 623 ACGTCGTCGAGGAAAAATTCAATTCTTACGGCACATCAGCCACCGGCGGCTCCGGCGATT 682
Query 626 TTAAAAACTATCAATCCGGTGTCAACAATCCGACTAGTCGTTTCAAGGCTTATTCCGACG 685
|||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||
Sbjct 683 TTAAAAACTATCAATCCGGTGTTAACAATCCGACGACTCGTTTCAAGGCCTATTCCGACG 742
Query 686 ACGGAAACGGCCGGGCTCAGACGTTTAAGACCTATACTCACGAAGCCAACGCCGGACCGG 745
| ||||| ||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 743 AAGGAAATGGCCGTGCTCAGACGTTTAAAACCTATACTCACGAAGCCAACTCCGGACCGG 802
Query 746 GTCAATCTTTCACCAGTTATGGCAAAAACGGTAACGGAGCTCCGAACGAGTTCTCTTCTT 805
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 803 GTCAATCTTTCACCAGTTACGGCAAAAACGGTAACGGAGCTCCAAACGAGTTCTCTTCTT 862
Query 806 ACGGCGTCTCCTCTAACGTTATCGGATCGGATTTCTCAAACTACGGCGAGAACAGTAACG 865
|||| |||||||||||||| |||||||| ||||||||||||||||| || ||| ||||||
Sbjct 863 ACGGTGTCTCCTCTAACGTAATCGGATCTGATTTCTCAAACTACGGTGAAAACGGTAACG 922
Query 866 CAGCCAACGACACTTTCAAAGGCTACGGTGGCGACGGTAATGTTCCTCGGAATAACTTCA 925
||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||
Sbjct 923 CAGCCAACGACACTTTCAAAGGCTACGGTGGTGACGGCAATGTTCCTCAGAATAACTTCA 982
Query 926 AAAGCTACGGTGCCTCTGGGAATGCCGCCGTTGACACATTCTTGAATTATAGAGACAAGG 985
|||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 983 AAAGCTACGGTGCCTCCGGGAACGCTGCCGTTGACACGTTCTTGAATTATAGAGACAATG 1042
Query 986 CTAACGTTGGGGACGATTCGTT-TGCGTCGTATGCCAAGAACTCAAACTTCGAGAAGGTC 1044
|||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1043 CTAACGTTGGTGATGATTCGTTCT-CGTCGTATGCCAAGAACTCAAACTTCGAGAAGGTT 1101
Query 1045 GACTTCGTGAATTACGGCAAATCTATTAATCCC-GGTTCGGAATCATTTACCGGTTATGG 1103
|| ||||| |||||||||||||||||||| ||| ||||| || || |||| ||||||||
Sbjct 1102 GATTTCGTAAATTACGGCAAATCTATTAA-CCCGGGTTCAGAGTCGTTTAGTGGTTATGG 1160
Query 1104 TAAAGGAGCTGAGGGAAACAAAATTGGTTTCAAAACGTATACTCAGAACTCAACCTTCAA 1163
|||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 1161 TAAAGGAGCTGAGGGAAACAAAATTGATTTCAAAACGTATACTCAGAACTCTACGTTCAA 1220
Query 1164 GGACTACGCGAAAACCGGAGTCGAATTTGCGAAATATAATCAGAGTAGACTCGGTGGTGG 1223
||||||| ||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct 1221 GGACTACACGAAAACCGGAGTCGAATTTGCGAAATATAACCGGAGTAGTCTCGGTGGTGG 1280
Query 1224 CAAAACTGTGAATAAGTGGGTGGAGCCTGGCAAGTTCTTTAGAGAATCGCTGCTTAAAGA 1283
|||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1281 CAAAACGGTAAATAAGTGGGTGGAGCCTGGCAAGTTCTTTAGAGAGTCGATGCTTAAAGA 1340
Query 1284 AAGTTCATTGATTTGGATGCCTGACATTAAAGATAAAATGCCGAAAAGGTCGTTTCTGCC 1343
| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1341 AGGTACATTGATTTGGATGCCTGACATTAAGGATAAAATGCCGAAAAGGTCGTTTCTACC 1400
Query 1344 TCGTAACATTGTCTCGAAACTACCGTTTTCGACATCAAAAATCGCGGAAATCAAGCGTGT 1403
||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1401 TCGTAGCATTGTCTCGAAACTACCGTTTTCTACATCGAAAATCGCGGAAATCAAGCGTGT 1460
Query 1404 CTTCCACGCTAAGGATAACTCGACAATGGCAGGGATAATTACTGATGCCGTAACAGAATG 1463
||||||||||| ||||||||||| |||| |||||||||||||||||| |||| |||||
Sbjct 1461 TTTCCACGCTAACGATAACTCGACGATGGAAGGGATAATTACTGATGCGGTAAGGGAATG 1520
Query 1464 TGAGAGATCGCCGACAATTGGCGAGACTAAAAGATGTGTCGGATCAGCGGAGGATATGAT 1523
||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1521 TGAGAGACCGCCGACAGTCAGCGAGACTAAACGATGTGTCGGATCAGCGGAGGATATGAT 1580
Query 1524 CGATTTCGCGACATCTGTGCTTGGTCGAAACGTGGTACTCCGGACTACAGAGAGTGTAGC 1583
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1581 CGATTTCGCGACATCTGTGCTTGGTCGAAGTGTGGTACTCCGGACGACAGAGAGTGTAGC 1640
Query 1584 CGGATCAAAGCAAAAAGTCATGATCGGAAAAGTCAAAGGAATCAACGGTGGAAGAGTGAC 1643
|||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1641 CGGATCAAAGGAGAAAGTCATGATCGGTAAAGTCAATGGAATCAACGGTGGAAGAGTGAC 1700
Query 1644 GAAATCAGTGTCATGTCACCAAAGTTTGTACCCTTACTTACTCTACTACTGTCACTCTGT 1703
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 AAAATCAGTGTCGTGTCACCAAAGTTTGTACCCTTACTTACTCTACTACTGTCACTCTGT 1760
Query 1704 GCCTAAAGTTCGAATATACGAGTCAGATCTTTTGGATCCCAAGAGTAAAGCCAAGATCAA 1763
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 GCCTAAAGTTCGGGTGTACGAGTCAGATCTTTTGGATCCCAAGAGTAAAGCCAAGATCAA 1820
Query 1764 CCATGGTATTGCTATATGTCACATGGACACATCAGCTTGGGGTGCGAACCATGGAGCCTT 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 CCATGGTATTGCTATATGTCACATGGACACATCAGCTTGGGGTGCGAACCATGGAGCCTT 1880
Query 1824 CATGTCGCTTGGGTCCCGGCCGGGTCAGATCGAGGTTTGCCATTGGATCTTTGAGAATGA 1883
||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1881 CATGTTGCTTGGGTCCCGGCCAGGTCAGATCGAAGTATGCCATTGGATCTTTGAGAATGA 1940
Query 1884 TATGAATTGGGCCATCGCCGATTAACCATGTCGTAGCAAATT-AATAATGAATGTTAATC 1942
||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 1941 TATGAATTGGGCCATCGCCGATTAACCATGTTGTAGCAAAATGAATAATGAATGTTAAT- 1999
Query 1943 GTTT-GTATCTTTATATTCCAGT 1964
|||| |||||| |||||| ||||
Sbjct 2000 GTTTTGTATCTCTATATTTCAGT 2022
> AT1G70370.1 | Symbols: PG2 | polygalacturonase 2 | chr1:26512722-26515188
REVERSE LENGTH=2352
Length=2352
Score = 1002 bits (542), Expect = 0.0
Identities = 1491/1939 (77%), Gaps = 106/1939 (5%)
Strand=Plus/Plus
Query 30 AACAAAAATGCTCAAA-AATTT-TGTCTTTCTCCTACCCTTCTTGTCGCGT-CTCTTCCA 86
|||||||||||||||| | ||| | || |||||| | |||||| | | | |||||| |
Sbjct 184 AACAAAAATGCTCAAACAGTTTCT-TC-TTCTCCAATCCTTCTCCT-TCTTCCTCTTCAA 240
Query 87 TGTAGTTATGGCCGGAGG-AGAACGGTTAACTAACGGCGGTTTTTC-GCCGGA-GATGAA 143
||||||||| | |||||| ||||| || | ||||||||| || | |||| || |||
Sbjct 241 TGTAGTTATCGTCGGAGGAAGAAC-ATT--C-GGCGGCGGTTTCTCAG-CGGAGGA-GAA 294
Query 144 TCCGTTCACACCCAAAGCATCTTTAGTACGTTACTGGAACAAACAGATCCAACACCAATC 203
||| || || || ||||||||| |||| ||||||||||||||| |||| | ||||||
Sbjct 295 TCCATTTACTCCAAAAGCATCTCTAGTTCGTTACTGGAACAAAGAGATTCGTGGCCAATC 354
Query 204 -ACCAGGCTCAGCCTTTCTCCTCTCCAAGGCTTCACCACTTACCGCTGTCGCCTCCGCCA 262
||| | || | ||| | |||| || ||||||||||| | ||| || | ||| || |
Sbjct 355 TCCCA-GATCGGAGTTTTTAATCTCAAAAGCTTCACCACTCAACGCCGTAGACTCAGCAA 413
Query 263 CTTTCGCAAAACTCGCCTCTGAAAACGCTCTTCCGGA-TCGCCTACCGGACTTT-TGCTC 320
||||| ||||||||||| | | ||| | || || || ||| | || || ||| |||||
Sbjct 414 CTTTCTCAAAACTCGCCGCCGCGAACTCGCTGCC-GACTCGTTTTCCCGA-TTTCTGCTC 471
Query 321 CGCGGCAAACCTCTTCTGTTTTCCAGATTTAGGTCCAACCCTCGAGAAACACAG-CAACG 379
||| || || |||||||||||||| |||||||| | | |||||||||||| | | |||
Sbjct 472 CGCCGCGAATCTCTTCTGTTTTCCTGATTTAGGAGCGAGTCTCGAGAAACAC-GACGACG 530
Query 380 ACGTTAAATTCTCTGTTTATGATCA-ACGAAACTTCACCAACTACGGCGGCACGATTCAC 438
||||||||||||| |||||||| || | | |||||||| ||||||||| | | ||
Sbjct 531 ACGTTAAATTCTCCGTTTATGACCAGAAG-AACTTCACTAACTACGGC--AATG-CTCGT 586
Query 439 CCCGGCGGTGCTGATTCGTTCAAGAAA-TATTCACAAA-ACGGCAACGTAGTAACCGACT 496
|||| || || ||||||||||| ||| || || ||| |||| || || |||||||| |
Sbjct 587 GCCGGAGGAGCAGATTCGTTCAA-AAACTACTC-GAAAGACGGTAATGTCGTAACCGATT 644
Query 497 CTTTCCGGCGATACAGCCGTGACGCCGCCGGTCACGAAGATAAGTTCACAGGCTACGCCG 556
| |||||| ||||||||||| |||| || |||||||| ||||| ||||| | ||||| |
Sbjct 645 CGTTCCGGAGATACAGCCGTAACGCGGCGGGTCACGACGATAAATTCACTGTCTACGGTG 704
Query 557 ATAACAGCAACGTCGTTGAGGAA-AACTTTAATTCTTACGGCAC-GTCAGCCACCGGTGG 614
| ||||| ||||| || |||||| | || ||||| ||||| || || | ||||| ||
Sbjct 705 AAAACAGTAACGTGGTAGAGGAAGGA-TTCAATTCATACGGAACATTC-GGAACCGGCGG 762
Query 615 CTCCGGCGATTTTAAAAACTATCAATCCGGTGTCAACAATCCGACTAGTCGTTTCAAGGC 674
| |||| ||||| | ||||| ||| | || |||||||| || ||||| |||| |||
Sbjct 763 CGCCGGAGATTTCACTAACTACCAAAACAACGTGAACAATCCAACGAGTCGATTCACGGC 822
Query 675 TTATTCCGAC-GACGGAAACGGCCGGGCTCAGACGTTTAAGACCTATACTCACGAAGCCA 733
||||||||| || || ||||| || |||| || || || ||||| || |||||||| |
Sbjct 823 GTATTCCGACGGA-GGTAACGGTCGATCTCAAACATTCAAAACCTACACACACGAAGCTA 881
Query 734 ACGCCGG-ACCGGGTCAATCTTTCACCAGTTATGGCAAAAACGGTAACGGAGCTCCGAAC 792
||||||| | | |||||||| ||||| || || ||||||||||| ||||||| ||| |||
Sbjct 882 ACGCCGGTAAC-GGTCAATCATTCACAAGCTACGGCAAAAACGGAAACGGAGTTCCTAAC 940
Query 793 GAGTTCTCTTCTTACGGCGTCTCCTCTAACGTTATCGGAT-CGGATTTCTCAAACTACGG 851
|||||| ||||||||||||||||||| || || ||||| | ||| |||||| ||||||||
Sbjct 941 GAGTTCACTTCTTACGGCGTCTCCTCCAATGTAATCGGCTCCGG-TTTCTCTAACTACGG 999
Query 852 CGAGAACAGTAACGCAGCCAACGACACTTTCA-AAGGCTACGGTGGCGACGGTAATGTTC 910
||||| | ||||| || ||||| || |||| || ||||||| ||||||||||||| |
Sbjct 1000 CGAGAGTGGAAACGCGGCGAACGATACCTTCACAA-GCTACGGAAGCGACGGTAATGTAC 1058
Query 911 CTCGGAATAACTTCAA-AAGCTACGGTGCCTCTGGGAATGCCGCCGTTGACACATTCTTG 969
||| ||| || || || || ||||||||| || || || |||||||| || || ||| |
Sbjct 1059 CTCAGAACAATTTTAATAA-CTACGGTGCTTCCGGTAACGCCGCCGTGGATACCTTCGCG 1117
Query 970 AATTATAGAGACAAGGCTAACGTTGGGGACGATTCGTT-TGCGTCGTATGC-CAAGAACT 1027
||||| ||||||||||| ||||| || ||||||||||| | | || ||||| ||| | |
Sbjct 1118 AATTACAGAGACAAGGCCAACGTCGGAGACGATTCGTTCT-CATCCTATGCGAAAG-ATT 1175
Query 1028 CAAACTTC-GAGAAGGTCGACTTCGTGAATTACGG-CAAATCTATT-AATCCCGGTTCGG 1084
| || ||| |||||||| | ||||| |||||||| | ||||| || ||||||||||| |
Sbjct 1176 CGAA-TTCGGAGAAGGTTAATTTCGTAAATTACGGTC-AATCT-TTCAATCCCGGTTCAG 1232
Query 1085 AATCATTT-ACCGGTTATGGTAAAGGAGCTGAGGGAAACAAAATTGGTTTCAAAACGTAT 1143
|| | ||| ||||||||||| ||||||||||| |||| |||| | | |||||||| |||
Sbjct 1233 AAAC-TTTCACCGGTTATGGCAAAGGAGCTGAAGGAAGCAAACTCAGCTTCAAAACCTAT 1291
Query 1144 AC-TCAGAACTCAACCTTCAAGGACTACGCGAAAACCGGAGTCGAATTTGCGAAAT---A 1199
|| || ||||| || |||||||||||||| |||| || |||| ||||| |||| |
Sbjct 1292 ACACCA-AACTCTACTTTCAAGGACTACGCCAAAAAGGGCGTCGCTTTTGCTAAATACAA 1350
Query 1200 ----T----AATCA--GAGTAGA-C-TCGGTGGTGGCAAAACTGTGAATAAGTGGGTGGA 1247
| || || | | | | | |||| | ||||||||| || ||||| ||| | ||
Sbjct 1351 CGTTTCAACAACCACCGCGAACACCGTCGGCGATGGCAAAACCGTAAATAAATGGATCGA 1410
Query 1248 GCCTGGCAAGTTCTTTAGAGAATCGCT-GCTTAAAGAAAGTTCATTGATTTGGATGCCTG 1306
|| || || ||||||||||||||| | |||||||||| || || ||||| |||||||
Sbjct 1411 ACCGGGTAAATTCTTTAGAGAATCG-TCGCTTAAAGAAGGTACAGTGATTCCTATGCCTG 1469
Query 1307 ACATTAAAGATAAAATGCCGAAAAGGTCGTTTCTGCCTCGTAACATTGTCT-CGAAACTA 1365
| ||||||||||||||||| |||||||||||| | || || | || | | ||||||||
Sbjct 1470 ATATTAAAGATAAAATGCCTAAAAGGTCGTTTTTACCCCGGAGTATAAT-TACGAAACTA 1528
Query 1366 CCGTTTTCGACATCAAAAATCGCG-GAAATCAAGCGTGTCTTCCACGCTAAGGATAACTC 1424
|| || || || || ||| ||| | || || ||| | |||||||||| || || ||
Sbjct 1529 CCCTTCTCTACTTCTAAACTCG-GTGAGATTAAGAGAATCTTCCACGCCGTTGAGAATTC 1587
Query 1425 GACAATGGCAGGGATAATTACTGATGCCGTAACAGAATGTGAGAGATCGCCGA-CAATTG 1483
||| |||| ||| ||||| || || || || || || || ||||| | |||| | | |
Sbjct 1588 GACGATGGGAGGTATAATCACCGACGCAGTGACGGAGTGCGAGAGGCCACCGAGC-GTCG 1646
Query 1484 GCGAGACTAAAAGATGTGTCGGATCAGCGGAGGATATGATCGATTTCGCGACATCTGTGC 1543
| ||||| ||| | || || |||||||||||||||||||||||||||||||| || |||
Sbjct 1647 GAGAGACGAAACGGTGCGTAGGATCAGCGGAGGATATGATCGATTTCGCGACGTCGGTG- 1705
Query 1544 TT-GGTCGAAACGTGGTACTCCGGACTACAGAGAGTGTAGCCGGATCAAAGCAAAAAGTC 1602
|| ||||| | |||||| || | || || |||| |||||||| |||||| |||| ||
Sbjct 1706 TTAGGTCGTAGCGTGGTGCTTAGAACAACGGAGAACGTAGCCGGGTCAAAGGAAAAGGT- 1764
Query 1603 A-TGATCGGAAAAGTCAAAGGAATCAACGGTGG-AAGAGTGACGAAATCAGTGTCATGTC 1660
| ||||||| |||||||| |||||||||||||| || | | |||||| | ||||| ||||
Sbjct 1765 AGTGATCGGGAAAGTCAACGGAATCAACGGTGGGAA-ATTAACGAAAGCTGTGTCGTGTC 1823
Query 1661 ACCAAAGTTTGTACCCTTA-CTTACTCTACTACTGTCACTCTGTGCCTAAAG-TTCGAAT 1718
| || ||||||||||| || || | | || ||||| ||||| || || |||| |||| |
Sbjct 1824 ATCAGAGTTTGTACCCGTATCT-ATTGTATTACTGCCACTCCGTACC-AAAGGTTCGGGT 1881
Query 1719 ATACGA-GTCAGATCTTTTGGA-TCCCAAGAGTAA-A-GCCAAGATCAACCATGGTATTG 1774
|||||| | | |||||| | || | || ||||| | | ||||| ||||| || ||||
Sbjct 1882 ATACGAAG-CTGATCTTCTAGAGTTG-AATAGTAAGAAG--AAGATTAACCACGGGATTG 1937
Query 1775 CTATATGTCACATGGACACATCAGCTTGGGGTGCGAACCATGGAGCCTTCATGTCGCT-T 1833
| || |||||||||||||| ||| | |||||| ||| |||||||| ||| | | ||| |
Sbjct 1938 CCATCTGTCACATGGACACGTCATCATGGGGTCCGAGTCATGGAGCTTTC-T-TAGCTCT 1995
Query 1834 -GGGTCCCGGCCGGGTCAGATCGAGGTTTGCCATTGGATCTTTGAGAATGATATGAATTG 1892
||||| ||||||| |||||| ||||| || ||||| |||||||| || ||||| ||
Sbjct 1996 CGGGTCAAAACCGGGTCGGATCGAAGTTTGTCACTGGATATTTGAGAACGACATGAACTG 2055
Query 1893 GGCCATCGCCGATTA-ACC 1910
||| ||||| ||||| |||
Sbjct 2056 GGCTATCGCTGATTAGACC 2074
> AT1G60390.1 | Symbols: PG1 | polygalacturonase 1 | chr1:22247474-22249636
REVERSE LENGTH=2092
Length=2092
Score = 292 bits (158), Expect = 7e-78
Identities = 858/1186 (72%), Gaps = 88/1186 (7%)
Strand=Plus/Plus
Query 747 TCAATCTTTCACCAGTTATGGCAAAAACGGTAACGGAGCTCCGAACGAGTTCTCTTCTTA 806
|||||| ||||| || || |||||||||| |||||||||||||| |||||||| |||
Sbjct 794 TCAATCATTCACAAGCTACAGCAAAAACGGAAACGGAGCTCCGAATGAGTTCTCGGGTTA 853
Query 807 CGGCGTCTCCTCTAACGTTA-TCGGAT-C-GGATTT-CTCAAACTACGGCGAGAA-CAG- 860
||| | || |||| || | || | || ||| | |||| ||| | ||||| | |
Sbjct 854 CGGAACCGGGTCAAACG-TAGT-TAATACGGGTTTTAC-CAAA-TAC-G-GAGAATCCGC 907
Query 861 TAACGCAGCCAACGACACTTTCAAAG-GCTACGGTGGCGACGGTAATGTTCCTCGGAATA 919
||||| ||| ||||||| |||| | | ||||||| | ||||||||||| | ||| ||
Sbjct 908 TAACGGAGCTAACGACAGTTTC-ACGAGCTACGGAGAAAACGGTAATGTT-C-CGG-TTA 963
Query 920 AC---TTCAAAAGCTACGGTGCCTCTGGGAATGCCGCCGTTGACACATTCT-TGAATTAT 975
|| || ||| | ||||||| | || || | ||||||| | || | |||||
Sbjct 964 ACGAATTTAAAGGATACGGTGACGGAGGTAACGGCGCCGTTTATGGGTT-TAAAAATTAC 1022
Query 976 AGAGA-CAAGGCTAACGTTGGGGACGATTCGTTT-GCGTCGTATGCCAAGAACTCAAACT 1033
||||| ||| | ||| | || | ||||| ||| | || || || || |||||||||
Sbjct 1023 AGAGACCAA-TCAAACATCGGAGTTGATTC-TTTCTCTTCTTACGCTAAAAACTCAAACA 1080
Query 1034 TCGAGAAGGTCGACTTCGTGAATTACGGCAAATCTATTAATCC-CGGTTCGGAATCATTT 1092
|||||||||| | ||||| |||||||| |||||| |||| || || || | || ||||
Sbjct 1081 ACGAGAAGGTCAATTTCGTAAATTACGGTAAATCTTTTAA-CCTTGGCTCTG-ATAATTT 1138
Query 1093 -ACCGGTTATGGTAAAG-GAGCTGAGGGAAACAAAATTGGTTTCAAAACGTATAC--TC- 1147
|||||||| || ||| | | | ||| || | | |||||||| | ||| |
Sbjct 1139 CACCGGTTACGGCCAAGATAAC-GTCGGAGGTAACGTCAGCTTCAAAAC-T-TACGGCCA 1195
Query 1148 AGAACTCA-ACCTTCAAGGACTACGCGAAA-ACCGGAGTCGAATTT--GCG-AAATATAA 1202
|| | || | || |||| ||| | ||| | ||| |||| ||| ||| | | |||
Sbjct 1196 AGGA--CAGAGTTTTAAGGTTTACACTAAAGA-CGGCGTCGTTTTTGCGCGTTATTCTAA 1252
Query 1203 TCAGA-GTAGA-CTCGGTGGTGGCAAAACTGTGAATAAGTGGGTGGAGCCTGGCAAGTTC 1260
| | | || || || | ||||||||| |||||||||||||| ||| || || |||
Sbjct 1253 T-A-ATGT-GAGTTC--TAATGGCAAAACGGTGAATAAGTGGGTTGAGGAGGGTAAATTC 1307
Query 1261 TTTAGAGAATCGCTGCTT-AAAGAAAGTTCATTGATTTGGATGCCTGACATTAAAGATAA 1319
|| |||||| || || || |||||| | | ||||| ||||| || |||||||||||
Sbjct 1308 TTCAGAGAAGCGATG-TTGAAAGAAGGGACTTTGATGCAAATGCCGGATATTAAAGATAA 1366
Query 1320 AATGCCGAAAAGGTCGTTTCTGCCTCGTAACATTGTCT-CGAAACTACCGTTTTCGACAT 1378
|||||| |||||| | ||| | || || ||||| || | ||| ||||||||||| |||
Sbjct 1367 AATGCCTAAAAGGACATTTTTACCCCGAAACATAGT-TAAGAATTTACCGTTTTCGTCAT 1425
Query 1379 CAAAAATCGCG-GAAATCAAGCGTGTCTTCCACGCTAAG-GATAACTCGA-CAATGGCAG 1435
| | |||| | || || | | || || || | || || || | ||||||| |
Sbjct 1426 CTACGATCG-GAGAGATTTGGAGGGTTTTTGGTGC-CGGTGAGAATTC-ATCAATGGCGG 1482
Query 1436 GGATAATTACT-GAT--GCCGTAACAGAATGTGAGAGATCGCCGA--CAATTGGCGAGAC 1490
|||||| | || | | || || |||| ||||||||| || ||| | | || |||||
Sbjct 1483 GGATAA-T-CTCG-TCGGCGGTTTCAGAGTGTGAGAGACCGGCGAGTC-A-CGGTGAGAC 1537
Query 1491 TAAA-AGATGTGTCGGATCAGCGGAGGATATGATCGATTTCGCGACATCTGTGCTTGGTC 1549
||| | ||||| |||||||||||||||||||| |||||||| || || ||||| || |
Sbjct 1538 -AAAGCGGTGTGTTGGATCAGCGGAGGATATGATAGATTTCGCTACGTCGGTGCTCGGAC 1596
Query 1550 GAAACGTGGTACTCCGGACTACAGAGAGTGTAGCCGGATCAAAGCAA-AAAGTCATGATC 1608
| ||| || | |||| || || | ||| | ||| |||||| || || ||| | ||
Sbjct 1597 GCGGCGTAGTGGTGAGGACGACGGAAAATGTTGTCGGGTCAAAG-AAGAAGGTCGTCATT 1655
Query 1609 GGAAAAGTCAAAGGAATCAACGGTGGAAGA-GTGACGAA-ATCAGTGTCATGTCACCAAA 1666
||||||||||| |||||||||||||| ||| || || || | |||| || |||||||| |
Sbjct 1656 GGAAAAGTCAATGGAATCAACGGTGG-AGATGTAAC-AAGAGCAGTTTCGTGTCACCAGA 1713
Query 1667 GTTTGTACCCTTACTTACTCTACTACTGTCACTCTGTGCCTAAAGTTCGAATATACGAGT 1726
|||||||||| || ||||| || || |||||||| || ||| || || | || ||
Sbjct 1714 GTTTGTACCCGTATTTACTGTATTATTGTCACTCGGTTCCTCGGGTACGTGTTTATGAAA 1773
Query 1727 CAGATCT-TTTGGATCCC-AAGAGTAAAGCCAAGATCAACCATGGTATTGCTATATGTCA 1784
| ||||| || || ||| |||||| || ||||| ||||||||| |||| || |||||
Sbjct 1774 CGGATCTACTT-GA-CCCGAAGAGTTTAGAGAAGATTAACCATGGTGTTGCCATCTGTCA 1831
Query 1785 CATGGACACATCAGCTTGGGGTGCGAACCATGGAGCCTTCATGTCGC-TTGGGTCCCGG- 1842
||| || || ||||||||| || ||| |||||||| || | | || || ||| | ||
Sbjct 1832 CATTGATACGTCAGCTTGGAGTCCGAGTCATGGAGCGTT--TTTGGCTTTAGGTTCTGGT 1889
Query 1843 CCGGGTCAGATCGAGGTTTGCCATTGGATCTTTGAGAATGATATGA 1888
||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1890 CCGGGTCAGATTGAAGTTTGCCATTGGATCTTTGAGAATGATATGA 1935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98593870380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5