BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472638
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23770.1 | Symbols: | F-box family protein | chr1:8405214-8... 1151 0.0
AT1G23780.1 | Symbols: | F-box family protein | chr1:8406686-8... 785 0.0
> AT1G23770.1 | Symbols: | F-box family protein | chr1:8405214-8406266
REVERSE LENGTH=1053
Length=1053
Score = 1151 bits (623), Expect = 0.0
Identities = 857/966 (89%), Gaps = 31/966 (3%)
Strand=Plus/Plus
Query 4 GAGGGTCCAGTGCCAATGGATGTTGTGGAGCTCGCTGCCACTAAAAGCAAAAGGTTAAG- 62
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 76 GAGGGTCCAGTGCCAATGGA---TGTGGAGCTCGCTGCCGCTAAAAGCAAAAGGTTAAGT 132
Query 63 CATACCATTCTTTTTGAAAAATGTATTGCTTGAGAAATGTGGTGATACCAGTGACTTAAC 122
| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 133 GA-ACCATTCTTTTTGAAAAATGTATTGCTTGAGAAATCTGGCGATACCAGTGACTTGAC 191
Query 123 TGCTTTGGCTTTGTCAGTACATGCCGTTATGTTAGAATCTGGATTCGTGTTGTTGAATCA 182
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 192 TGCTTTGGCTTTATCAGTACATGCCGTTATGTTAGAATCTGGATTCGTGTTGTTGGATCA 251
Query 183 TGGCTCTGATAAGTTTAGCTTTTCAAAGGAGTTACTCTCAGTATCTCTAAGGTATACTCT 242
|||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 252 TGGCTCTGATAAGTTTAGCTTTTCAAAGAAGTTACTTTCTGTATCTCTAAGGTATACTCT 311
Query 243 GCCTGAGCTCATTATC-CGTAAGGATACCAATACAATCGAGTCCGTTACTGTGAAGTTTC 301
||||||||| |||| | ||||||||||| |||||| ||||||| |||||||||| |||||
Sbjct 312 GCCTGAGCTAATTA-CACGTAAGGATACTAATACAGTCGAGTCAGTTACTGTGAGGTTTC 370
Query 302 AGAACTTAGGCCCTAGGCTTGTAGTTTACGGAACTTTAGGTGGGTATGGTGGGCGAGTGC 361
||||| ||||||||||||||||||||||||||||| ||||||||| | || ||||||||
Sbjct 371 AGAACATAGGCCCTAGGCTTGTAGTTTACGGAACTCTAGGTGGGTCTTGTAAGCGAGTGC 430
Query 362 ACATGACTTATCTTGATAAGCGTAGATTTTTGCCCGTTATTGATTCGGTTGTGGATACTT 421
||||||||| |||||||||| |||| |||||||| |||||||||| ||||||||||||||
Sbjct 431 ACATGACTTCTCTTGATAAGAGTAGGTTTTTGCCTGTTATTGATTTGGTTGTGGATACTT 490
Query 422 TAAAGTTTGAAAAACAAGGCTCTTCGAGCTACTACCGCGAAGTGTTCATGTTGTGGAGAA 481
| |||||||| || || |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 491 TGAAGTTTGAGAAGCAGGGCTCTTCTAGCTACTACCGGGAAGTGTTCATGTTGTGGAGAA 550
Query 482 TGGTAAAAGATGATCTTGTTATCCCGTTGTGGATTGGTCTTTGTGATAAGGCTGGCTTGG 541
||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 551 TGGTAAAAGATGAACTTGTTATACCGTTGTTGATTGGTCTTTGTGATAAGGCTGGCTTGG 610
Query 542 AATCTCCACCTTGTCTGATGCGCTTACCAACAGAACTAAAGCTGAAGATACTAGAGTTGC 601
|||||||||||||| |||||| | |||| ||||| |||||||||||||||||||||||||
Sbjct 611 AATCTCCACCTTGTTTGATGCTCCTACCGACAGAGCTAAAGCTGAAGATACTAGAGTTGC 670
Query 602 TTCCTGGTGTGAGTATTGGA-ACTATGGCTTGTGTTTGTACAGAAATGAGGTATCTTGCA 660
|||||||||||||||||||| | ||||||||||||||||||||| ||| ||||||| ||
Sbjct 671 TTCCTGGTGTGAGTATTGGATA-TATGGCTTGTGTTTGTACAGAGATGCGGTATCTGGCT 729
Query 661 TCAGACAATGATTTGTGGAAACAGAAATGCTTGGAAGAAGGTAAGGATTGTCTTTGGAAA 720
||||| |||||||||||| |||| |||||||||||||||||||||| |||||||||||||
Sbjct 730 TCAGATAATGATTTGTGGGAACATAAATGCTTGGAAGAAGGTAAGGGTTGTCTTTGGAAA 789
Query 721 TTGT-TAACAGGAAATGTTGATTGGAAGCGTAAATTTGCTTCTTTTTGGAGA-GAAAAAC 778
|| | || |||| |||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 790 TTATATA-CAGGCGATGTTGATTGGAAGCGTAAATTTGCTTCTTTTTGGAGACGGAAA-C 847
Query 779 GACTC-AGTCTCCTAGCAAGACGAAACCC------------GAGCAACCCTCGATTTCCT 825
||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 848 GACTCGA-TCTCCTAGCAAGACGAAACCCTCCCATAAAAAAGAGCAACCCTCGATTTCCT 906
Query 826 CCGATAATTCGTGACCGTGGAGACCCTCGATACCCTTTTGACCGTCTCGTCCCAAGAGAC 885
|| || ||| |||||| |||||| | || | |||||||||||| | | |||||| |||
Sbjct 907 ACGCTATTTCCAGACCGTAGAGACCGTAGAGAGCCTTTTGACCGTTTTGGCCCAAGTGAC 966
Query 886 CCTTTCGACCGTTTCAGCCCAAGAGACCCTTTCTACCATTTCGGTCCAAGAGACCCTAGA 945
|| | ||||||| | | |||||||||| ||| ||| || |||||||||||||||
Sbjct 967 --TT-CTACCGTTTTGGACTAAGAGACCCTAGAGACCGTTTTGGCCCAAGAGACCCTAGA 1023
Query 946 GA-CCT 950
|| |||
Sbjct 1024 GATCCT 1029
> AT1G23780.1 | Symbols: | F-box family protein | chr1:8406686-8408525
REVERSE LENGTH=1840
Length=1840
Score = 785 bits (425), Expect = 0.0
Identities = 604/687 (88%), Gaps = 25/687 (4%)
Strand=Plus/Plus
Query 29 TGGAGCTCGCTGCCA-CTAAAAGCAAAAGGTTAAG-CATACCATTCTTTTTGAAAAATGT 86
|||||||||||| || || |||||||||| |||| | ||||||||| ||||||||| |
Sbjct 485 TGGAGCTCGCTG-CAGCTGGAAGCAAAAGGCTAAGTGA-ACCATTCTTCTTGAAAAATAT 542
Query 87 ATTGCTTGAGAAATGTGGTGATACCAGTGACTTAACTGCTTTGGCTTTGTCAGTACATGC 146
| |||||||||||| ||||||||| ||||| || ||| ||||||||||||||||||||||
Sbjct 543 ACTGCTTGAGAAATCTGGTGATACTAGTGAGTTGACTACTTTGGCTTTGTCAGTACATGC 602
Query 147 CGTTATGTTAGAATCTGGATTCGTGTTGTTGAATCATGGCTCTGATAAGTTTAGCTTTTC 206
|||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||
Sbjct 603 TGTTATGTTAGAATCTGGATTCGTGCTGTTGAATCATGGCTCTGACAAGTTTAACTTTTC 662
Query 207 AAAGGAGTTACTCT-CAGTATCTCTAAGGTATACTCTGCCTGAGCTCATT-A-TCCGTAA 263
|||||||||||| | ||||||| || ||||||||||| |||||||| ||| | | | |||
Sbjct 663 AAAGGAGTTACT-TACAGTATCCCTGAGGTATACTCTACCTGAGCTGATTAAGT-C-TAA 719
Query 264 GGATACCAATACAATCGAGTCCGTTACTGTGAAGTTTCAGAACTTAGGCCCTAG-GCTTG 322
|||||| |||||||||||||| ||| |||||||||||||||| ||||||||| | | |||
Sbjct 720 GGATACAAATACAATCGAGTCAGTTTCTGTGAAGTTTCAGAATTTAGGCCCT-GTGGTTG 778
Query 323 TAGTTTACGGAACTTTAGGTGGGTATGGTGGGCGAGTGCACATGACTTATCTTGATAAGC 382
|||||||||||||| ||||||| | | ||||||||||||| |||| ||||||||||||
Sbjct 779 TAGTTTACGGAACTGTAGGTGGATCTAGTGGGCGAGTGCATATGA---ATCTTGATAAGC 835
Query 383 GTAGATTT-TTGCCCGTTATTGA-TTCGGTTGTGGATACTT-TAAAGTTTGAAAAACAAG 439
|||| ||| || || ||||| || || |||| ||||||||| || | | ||| || |||
Sbjct 836 GTAGGTTTGTT-CCTGTTATCGACTT-GGTTATGGATACTTCTACA-TCTGACGAAGAAG 892
Query 440 GCTCTTCGAGCTA-CTACCGCGAAGTGTTCATGTTGTGGAGAATGGTAAAAGAT-GATCT 497
|||||||||| || |||||| |||||||||||||| |||||||||||||||||| | ||
Sbjct 893 GCTCTTCGAG-TATCTACCGTGAAGTGTTCATGTTCTGGAGAATGGTAAAAGATCG-CCT 950
Query 498 TGTTATCCCGTTGTGGATTGGTCTTTGTGATAAGGCTGGCTTGGAATCTCCACCTTGTCT 557
|||||||||||||| ||||||| |||| ||||| |||||||||||| ||||||| ||| |
Sbjct 951 TGTTATCCCGTTGTTGATTGGTATTTGCGATAAAGCTGGCTTGGAACCTCCACCGTGTTT 1010
Query 558 GATGCGCTTACCAACAGAACTAAAGCTGAAGATACTAGAGTTGCTTCCTGGTGTGAGTAT 617
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GATGCGCTTACCAACAGAGCTAAAGCTGAAGATACTAGAGTTGCTTCCTGGTGTGAGTAT 1070
Query 618 TGGAACTATGGCTTGTGTTTGTACAGAAATGAGGTATCTTGCATCAGACAATGATTTGTG 677
||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||
Sbjct 1071 TGGAAATATGGCTTGTGTTTGTACAGAAATGCGGTATCTGGCATCAGACAATGACTTGTG 1130
Query 678 GAAACAGAAATGCTTGGAAGAAGGTAA 704
||| ||||| |||||||| |||| |||
Sbjct 1131 GAAGCAGAAGTGCTTGGAGGAAGTTAA 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5