BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472641
Length=1871
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23800.1 | Symbols: ALDH2B7, ALDH2B | aldehyde dehydrogenase... 2922 0.0
> AT1G23800.1 | Symbols: ALDH2B7, ALDH2B | aldehyde dehydrogenase
2B7 | chr1:8412051-8414879 REVERSE LENGTH=1867
Length=1867
Score = 2922 bits (1582), Expect = 0.0
Identities = 1779/1874 (95%), Gaps = 13/1874 (1%)
Strand=Plus/Plus
Query 1 AAACAGAGCTCTCACACCAATACAAAAGCGACCATCACCGTGagaaagagaagaagaaga 60
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 3 AAACAGAGTTCTCACACCAATACAAAAGAGACCATCACCGTGAGAAAGAGAAGAAGAACA 62
Query 61 aagaaACTTAGCCATGGCATCAAGAAGAGTttcttcgctgctctctcgctctttcatgtc 120
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 AAAAAAGTTAGCCATGGCATCAAGAAGAGTTTCTTCGCTGCTCTCTCGCTCTTTCATGTC 122
Query 121 ctcatcaccttctctcttctctcttAGAGGAATGAACAGAGGAGCTCAAAGATACAGTAA 180
||| |||| |||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 CTCCTCACGTTCTATCTTCTCTCTTAGAGGCATGAACAGAGGAGCTCAAAGATACAGTAA 182
Query 181 CCTCGCTGCTGCTGTTGAAAACACTATTACACCACCTGTGAAAGTCGAACACACACAGCT 240
||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 183 CCTCGCTGCTGCTGTCGAAAACACTATTACTCCACCAGTGAAAGTTGAACACACACAGCT 242
Query 241 TCTAATCGGTGGAAGATTCGTTGATGCAGTGTCAGGAAAAACTTTCCCTACTTTGGATCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TCTAATCGGTGGAAGATTCGTTGATGCAGTGTCAGGAAAAACTTTCCCTACTTTGGATCC 302
Query 301 AAGGAATGGAGAAGTGATTGCTCAGGTAG-CTGAAGGTGATGCAGAAGACGTGAACCGCG 359
||| |||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 303 AAGAAATGGAGAAGTGATTGCTCAAGT-GTCTGAAGGTGATGCAGAAGACGTGAACCGCG 361
Query 360 CGGTTGCAGCTGCACGAAAGGCTTTTGATGAAGGACCATGGCCTAGAATGACTGCTTATG 419
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 362 CGGTTGCAGCTGCACGAAAGGCTTTTGATGAAGGACCATGGCCTAAAATGACAGCTTATG 421
Query 420 AGAGATCAAAGATACTGTTTCGTTTCGCGGATTTGATAGAGAAACATAACGATGAGATTG 479
|||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||
Sbjct 422 AGAGATCAAAGATACTGTTTCGTTTCGCTGATTTAATCGAGAAACATAATGATGAGATTG 481
Query 480 CTGCTCTTGAGACTTGGGATAATGGGAAACCTTATGAACAATCTGTTCAAATTGAAGTCC 539
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 482 CTGCTCTTGAGACTTGGGATAATGGGAAACCTTATGAACAATCTGCTCAAATTGAAGTAC 541
Query 540 CAATGCTTGCTAGGGTGTTCCGGTACTATGCTGGTTGGGCAGACAAGATCCATGGAATGA 599
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 542 CAATGCTTGCTAGGGTGTTCCGGTACTATGCTGGTTGGGCAGACAAGATACATGGAATGA 601
Query 600 CAATGCCAGGAGATGGTCCACACCATGTGCAGACATTGCATGAGCCTATAGGAGTCGCTG 659
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 602 CAATGCCAGGAGATGGTCCACACCATGTGCAGACCTTACATGAGCCTATAGGAGTCGCTG 661
Query 660 GACAAATCATCCCATGGAACTTCCCTCTTCTCATGCTTTCTTGGAAACTCGGACCAGCTT 719
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 662 GACAAATCATCCCATGGAACTTCCCTCTTCTCATGCTTTCTTGGAAACTTGGACCAGCTT 721
Query 720 TAGCTTGCGGTAACACCATTGTTCTCAAGACTGCTGAGCAAACTCCTTTATCTGCTCTTC 779
||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||
Sbjct 722 TAGCTTGCGGTAACACCGTTGTTCTCAAAACTGCTGAGCAAACTCCTCTATCTGCTCTTC 781
Query 780 TTGTTGGAAAACTTCTTCATGAGGCTGGACTTCCTGATGGAGTTGTGAATATAGTTTCTG 839
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TTGTTGGGAAACTACTTCATGAGGCTGGACTTCCTGATGGAGTTGTGAATATAGTTTCTG 841
Query 840 GATTTGGTGCAACAGCTGGTGCAGCTATAGCTAGTCACATGGACGTTGATAAGGTTGCTT 899
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GATTTGGGGCTACTGCTGGTGCAGCTATAGCTAGTCACATGGACGTTGATAAGGTTGCTT 901
Query 900 TCACCGGGTCTACTGATGTTGGGAAGATTATTCTTGAGTTGGCCTCAAAAAGTAACCTTA 959
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 902 TCACCGGGTCTACTGATGTTGGGAAGATTATTCTTGAGTTAGCTTCAAAAAGCAACCTTA 961
Query 960 AGGCAGTGACTCTTGAGCTTGGAGGCAAGTCACCATTCATTGTATGTGAAGATGCTGATG 1019
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 962 AGGCAGTGACTCTTGAGCTTGGAGGAAAGTCACCATTCATTGTATGTGAAGATGCTGATG 1021
Query 1020 TTGATCAAGCCGTTGAGCTTGCACATTTCGCTTTGTTCTTTAACCAGGGACAATGTTGCT 1079
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1022 TGGATCAGGCCGTTGAGCTTGCACATTTCGCTTTGTTCTTTAACCAGGGACAATGTTGTT 1081
Query 1080 GTGCTGGTTCGCGTACATTTGTACATGAACGCGTGTATGATGAGTTTGTAGAGAAAGCTA 1139
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1082 GTGCTGGTTCGCGTACATTTGTACATGAACGTGTGTATGATGAGTTTGTAGAGAAAGCTA 1141
Query 1140 AGGCTCGTGCACTCAAGCGCAATGTTGGAGATCCCTTCAAGTCAGGCATTGAGCAAGGTC 1199
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 AAGCTCGTGCACTCAAGCGAAATGTTGGAGATCCCTTCAAGTCAGGCATTGAGCAAGGTC 1201
Query 1200 CCCAGGTTGACTCAGAGCAATTCAAGAAAATCTTGAAGTACATCAAATATGGAGTTGAGG 1259
||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 1202 CCCAGGTAGACTCAGAGCAATTCAACAAAATCCTGAAGTACATCAAACATGGAGTTGAGG 1261
Query 1260 CTGGAGCCACATTACAAGCTGGAGGTGACCGGCTTGGTTCCAAGGGTTACTACATTCAAC 1319
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1262 CTGGAGCCACATTACAAGCTGGAGGTGACAGGCTTGGTTCCAAGGGTTACTACATTCAAC 1321
Query 1320 CTACTGTCTTCTCAGACGTTAAAGATGACATGCTCATAGCCACAGACGAGATTTTCGGGC 1379
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1322 CTACTGTCTTCTCAGATGTGAAAGATGACATGCTCATAGCAACAGACGAGATTTTCGGGC 1381
Query 1380 CGGTTCAAACCATACTGAAATTCAAGGATCTTGATGAGGTGATTGCAAGAGCGAACAACT 1439
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1382 CGGTTCAAACCATACTGAAATTCAAGGATCTTGATGAGGTGATTGCAAGGGCCAACAACT 1441
Query 1440 CGAGGTATGGTTTAGCTGCAGGAGTGTTCACACAGAATCTGGACACAGCGCACCGGCTAA 1499
| ||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||| |
Sbjct 1442 CAAGGTACGGTTTAGCTGCTGGAGTGTTCACACAGAATCTTGACACAGCACACCGGCTGA 1501
Query 1500 TGCGAGCACTCAGGGTTGGGACCGTTTGGATTAACTGTTTCGATGTTCTTGATGCATCGA 1559
||||||||||||| |||||||| |||||||| |||||||| ||||| ||||||||||| |
Sbjct 1502 TGCGAGCACTCAGAGTTGGGACTGTTTGGATCAACTGTTTTGATGTACTTGATGCATCAA 1561
Query 1560 TTCCATTTGGAGGGTATAAGATGAGTGGCATTGGAAGAGAGAAAGGTCTCTACAGTCTCA 1619
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1562 TTCCATTTGGAGGGTATAAGATGAGTGGCATTGGTAGAGAGAAAGGTATCTACAGTCTCA 1621
Query 1620 ACAATTACTTGCAAGTCAAGGCTGTTGTCACTTCCCTCAAGAACCCGGCCTGGCTCTAAA 1679
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1622 ACAATTACTTGCAAGTCAAGGCTGTTGTTACTTCCCTCAAGAACCCTGCCTGGCTCTAAA 1681
Query 1680 CCATACCAGGTGGTTACGCTTATTTATCGAGTTTGGTTTATAATGGATTTGCACTTTTGC 1739
||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||||
Sbjct 1682 CCATACCAGGTGGTTACACTTATTTCTCGAGTTTGGTTTAT---G-ATTTGCACTTTTGC 1737
Query 1740 TTTGGGAAACCTGGAGTTGTT-T-TGTCTCTAGGTTTTCTAGATTTTGAGAGTAATAATT 1797
|||| |||||||||||||| | |||||||||| ||||||||||||||||||||| ||
Sbjct 1738 TTTGA-AAACCTGGAGTTGTACTGTGTCTCTAGGATTTCTAGATTTTGAGAGTAAT--TT 1794
Query 1798 TATCTTCAAACACATTTTACAAATAAAGCTAAATGAAAATGTGTGATCAATAAACACATA 1857
|||||||| ||||||| |||||||||||| |||| |||||||||| |||||||||| |
Sbjct 1795 -ATCTTCAAT-ACATTTTGCAAATAAAGCTACATGACAATGTGTGATTAATAAACACAAA 1852
Query 1858 CTCTTATTAGTTTC 1871
||||||||||||||
Sbjct 1853 CTCTTATTAGTTTC 1866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92620005525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5