BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472644
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23830.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1550 0.0
AT1G23840.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 252 6e-66
> AT1G23830.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant
structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G23840.1);
Has 57 Blast hits to 52 proteins in 7 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8422960-8424088
REVERSE LENGTH=1129
Length=1129
Score = 1550 bits (839), Expect = 0.0
Identities = 1014/1098 (92%), Gaps = 13/1098 (1%)
Strand=Plus/Plus
Query 1 AAAGAGATCAACAGATGGAGACCAAGAGCGAAGAGAAGCTAAGTGTCATCGAACTTCTAA 60
||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 35 AAAGAGATCAACAAATGGAGACGAATAGCGAAGAGAAGCTAAGTGTCATCGAACTACTAA 94
Query 61 AACTAGCTGC-GAAGCTACTCTTCGGTAATAGCAATCTCTTGCTCTTCCTATGCCTCTGC 119
||| |||| | ||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 95 AACGAGCT-CTTAAGCTACTCTTTGGTAACATCAATCTCTTGCTCTTCCTATGCCTCTGC 153
Query 120 TCTCTCCCACTGTTTTGTTTCTTGATCTTCTTTGAGCTCTCACTCCAAACCACTGTCTCT 179
|||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| |
Sbjct 154 TCTCTCCCACTGTTTTTTTTCTTGATCTTCTTTGAGCTCTCCCTCCAAACCACCGTCTAT 213
Query 180 CTCACTTCCCAATTCCTCTTCAAACTACTCACTCTTGGAGAGGACTTGCCAGAGAATGAT 239
||||||||||||||||||| |||||||||| ||| ||||| |||||||| || ||||||
Sbjct 214 CTCACTTCCCAATTCCTCTGGAAACTACTCATTCTGGGAGAAGACTTGCCGGAAAATGAT 273
Query 240 CTGATTCTCATATCAGAGAAAAAGAATGATATGATTCCATGGCTGATTCAGACATCTCTG 299
|||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||
Sbjct 274 CTGATTCTCATATCAGAGAAAAAGAATGATCTGATTTCATGGCTGATCCAGACATTTCTG 333
Query 300 CTCTACTTTTTCCCCTACACCATTCTTGACCTTCTTACTACCACAACAATCGTTGCAGCA 359
|||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 334 CTCTACTTCTTCCCCTACACCATTCTTGACCTTCTTACCACCACCACGATCGTTGCAGCA 393
Query 360 TCTTCGATTGTTTACACATCCAAGGAAGAGCCGTTAGGGCTGCTACATTTGGTTG-GCAG 418
|||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||
Sbjct 394 TCTTCGATTGTTTACACATCCAAGGAAGAGCCGTTAGGGCTGCTTTATTTGGTAGAG-AG 452
Query 419 ATCTGTCAAAATATGTCAGAACAGAGTAGGTGGTTGTCTGATCACATCTCTTTATGTCCT 478
|||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 453 ATCTATCAAAATATGTCAGAACAGAGTAGGAGGTTGTCTGATCACATCTCTCTATGTCCT 512
Query 479 CCTTTGGTCAACCTCTGtttttcttttccttttcttgttcttttttcttcagtttctctc 538
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 513 CCTTTGGTCAACCTCAGTTTTTCTTTTCTTTTTCTTGTTCTTTTTTCTTCAGTTTCTCTC 572
Query 539 tggttctACCAACTACGTATCCATTCCTTATCTCTCACGCGAATACAAAAGGTTCCACTA 598
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 573 TGGTTCAACCAACTACGTATCCATTCCTTATCTCTCACGCGAATACAAAGGGTTCCACTA 632
Query 599 CCAGGCAGCAGGG-CTGTTCGACGTGGTGGTG-GTGCTGACTCTTCTGATTCAGTGTACT 656
||| || | ||| || ||| ||||||| ||| | |||||||||||||| || ||||||
Sbjct 633 CCAACCAAC-GGGTCTATTCAACGTGGTAGTGCCT-CTGACTCTTCTGATGCAATGTACT 690
Query 657 CTCTTTATAGTTCTGACTGCAAAGCT-CAGCAAGTGGAGCTCCGGTTGGAACATGGGTTT 715
|| ||||||||||||||||||||| | || |||||||||||||| ||||||||||||||
Sbjct 691 CTATTTATAGTTCTGACTGCAAAG-TATAGTAAGTGGAGCTCCGGATGGAACATGGGTTT 749
Query 716 GGTTGTTTCGGTCTTGGAAGAAGACGAAGATGATCAAGGCATTTATGGAAGCGATGCTCT 775
|||||||||||||||||||||||||||||||| ||||||||| || ||| | ||||||||
Sbjct 750 GGTTGTTTCGGTCTTGGAAGAAGACGAAGATGGTCAAGGCATCTACGGAGGAGATGCTCT 809
Query 776 GTCTCTTTCAGCTTGGTATAGAAAAGGACATGAGAAGCGTGACCTCTGGTTGATGTTAAT 835
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 GTCTCTTTCAGGTTGGTATAGAAAAGGACATGAGAAGCGTGACCTCTGGTTGATGTTAAT 869
Query 836 GTTCTTGGTCTTCAGTCTTGCGATGAGGATGCCATGTTTATACTCCAAATGCAGTGCGAG 895
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 870 GTTCTTGGTCTTCGGTCTTGCGACAAGGATGCCATGTTTATACTCCAAATGCAGTGCGAG 929
Query 896 TGGAAATGGAGTGATGTACACTGGTTTCTATGTAGGCTTGATTTGTGTTGGGAATTTGCT 955
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 930 TGGAAATGGAGTGATGTACACTGGCTTCTATGTAGGCTTGATTTGTGTTGGCAATTTACT 989
Query 956 TAAATGGGTGACTTGTCTTGCTTGTTACCATGATTGTAAAACTATGGTTTCGAGGAAGAA 1015
||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || ||
Sbjct 990 TAAATGGGTGACTTGTCTTGCCTGTTACCATGATTGTAAAACTATGGTTTTGAGAAAAAA 1049
Query 1016 GCATGATGTTGAACAAGCTAAAATTCTTGCTGCTTAACGAG--TTTGGCTGAGATCAATT 1073
|| |||||| ||||||||||||| || |||||||||| ||| |||||||||||||||||
Sbjct 1050 GCGTGATGTAGAACAAGCTAAAACTCCTGCTGCTTAA-GAGACTTTGGCTGAGATCAATT 1108
Query 1074 CAAAGTGTGAATCTTTAT 1091
||||||||||||||||||
Sbjct 1109 CAAAGTGTGAATCTTTAT 1126
> AT1G23840.1 | Symbols: | unknown protein; LOCATED IN: endomembrane
system; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 12 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G23850.1); Has 53 Blast hits
to 48 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:8424297-8425376 REVERSE
LENGTH=1080
Length=1080
Score = 252 bits (136), Expect = 6e-66
Identities = 211/246 (86%), Gaps = 10/246 (4%)
Strand=Plus/Plus
Query 1 AAAGAGATCAACAGATGGAGACCAAGAGCGAAGAGAAGCTAAGTGTCATCGAACTTCTAA 60
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 26 AAAGAGATCAACAAATGGAGACAAAGAGCGAGGAGAAGCTAAGTGTCATCGAACTACTAA 85
Query 61 AACTAGCTGC-GAAGCTACTCTTCGGTAATAGCAATCTC-TTGCTCTTCCTATGCCTCTG 118
||| |||| | ||||||||||| ||||| | ||||||| | |||||||| | || ||
Sbjct 86 AACGAGCT-CTTAAGCTACTCTTTGGTAACATCAATCTCGCT-CTCTTCCTCTTTCTTTG 143
Query 119 CTCTCTCCCACTGTTTTGTTTCTTGATCTTCTTTGAGCTCTCACTCCAAACCACTGTCTC 178
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 144 CTCTCTCCCACTGTTTTGTTTCTTGATCTTCTTCGAGCTCTCCCTCCAAACCACTGTCTC 203
Query 179 TCTCACTTCC-CAATTCCTCTTCAAACTACTCACT-CTTGGAG-AGGACTTGCCAGAGAA 235
||| ||||| || | | ||| ||||||| ||| | || | || |||||||| | |||||
Sbjct 204 ACTCGCTTCCACA-TACATCTCCAAACTAGTCAATTCT-G-AGGAGGACTTGTCGGAGAA 260
Query 236 TGATCT 241
||||||
Sbjct 261 TGATCT 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53463580425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5