BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472644 Length=1091 Score E Sequences producing significant alignments: (Bits) Value AT1G23830.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1550 0.0 AT1G23840.1 | Symbols: | unknown protein; LOCATED IN: endomemb... 252 6e-66 > AT1G23830.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23840.1); Has 57 Blast hits to 52 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8422960-8424088 REVERSE LENGTH=1129 Length=1129 Score = 1550 bits (839), Expect = 0.0 Identities = 1014/1098 (92%), Gaps = 13/1098 (1%) Strand=Plus/Plus Query 1 AAAGAGATCAACAGATGGAGACCAAGAGCGAAGAGAAGCTAAGTGTCATCGAACTTCTAA 60 ||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||| Sbjct 35 AAAGAGATCAACAAATGGAGACGAATAGCGAAGAGAAGCTAAGTGTCATCGAACTACTAA 94 Query 61 AACTAGCTGC-GAAGCTACTCTTCGGTAATAGCAATCTCTTGCTCTTCCTATGCCTCTGC 119 ||| |||| | ||||||||||| ||||| | |||||||||||||||||||||||||||| Sbjct 95 AACGAGCT-CTTAAGCTACTCTTTGGTAACATCAATCTCTTGCTCTTCCTATGCCTCTGC 153 Query 120 TCTCTCCCACTGTTTTGTTTCTTGATCTTCTTTGAGCTCTCACTCCAAACCACTGTCTCT 179 |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| | Sbjct 154 TCTCTCCCACTGTTTTTTTTCTTGATCTTCTTTGAGCTCTCCCTCCAAACCACCGTCTAT 213 Query 180 CTCACTTCCCAATTCCTCTTCAAACTACTCACTCTTGGAGAGGACTTGCCAGAGAATGAT 239 ||||||||||||||||||| |||||||||| ||| ||||| |||||||| || |||||| Sbjct 214 CTCACTTCCCAATTCCTCTGGAAACTACTCATTCTGGGAGAAGACTTGCCGGAAAATGAT 273 Query 240 CTGATTCTCATATCAGAGAAAAAGAATGATATGATTCCATGGCTGATTCAGACATCTCTG 299 |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||| Sbjct 274 CTGATTCTCATATCAGAGAAAAAGAATGATCTGATTTCATGGCTGATCCAGACATTTCTG 333 Query 300 CTCTACTTTTTCCCCTACACCATTCTTGACCTTCTTACTACCACAACAATCGTTGCAGCA 359 |||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||| Sbjct 334 CTCTACTTCTTCCCCTACACCATTCTTGACCTTCTTACCACCACCACGATCGTTGCAGCA 393 Query 360 TCTTCGATTGTTTACACATCCAAGGAAGAGCCGTTAGGGCTGCTACATTTGGTTG-GCAG 418 |||||||||||||||||||||||||||||||||||||||||||| ||||||| | | || Sbjct 394 TCTTCGATTGTTTACACATCCAAGGAAGAGCCGTTAGGGCTGCTTTATTTGGTAGAG-AG 452 Query 419 ATCTGTCAAAATATGTCAGAACAGAGTAGGTGGTTGTCTGATCACATCTCTTTATGTCCT 478 |||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 453 ATCTATCAAAATATGTCAGAACAGAGTAGGAGGTTGTCTGATCACATCTCTCTATGTCCT 512 Query 479 CCTTTGGTCAACCTCTGtttttcttttccttttcttgttcttttttcttcagtttctctc 538 ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 513 CCTTTGGTCAACCTCAGTTTTTCTTTTCTTTTTCTTGTTCTTTTTTCTTCAGTTTCTCTC 572 Query 539 tggttctACCAACTACGTATCCATTCCTTATCTCTCACGCGAATACAAAAGGTTCCACTA 598 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 573 TGGTTCAACCAACTACGTATCCATTCCTTATCTCTCACGCGAATACAAAGGGTTCCACTA 632 Query 599 CCAGGCAGCAGGG-CTGTTCGACGTGGTGGTG-GTGCTGACTCTTCTGATTCAGTGTACT 656 ||| || | ||| || ||| ||||||| ||| | |||||||||||||| || |||||| Sbjct 633 CCAACCAAC-GGGTCTATTCAACGTGGTAGTGCCT-CTGACTCTTCTGATGCAATGTACT 690 Query 657 CTCTTTATAGTTCTGACTGCAAAGCT-CAGCAAGTGGAGCTCCGGTTGGAACATGGGTTT 715 || ||||||||||||||||||||| | || |||||||||||||| |||||||||||||| Sbjct 691 CTATTTATAGTTCTGACTGCAAAG-TATAGTAAGTGGAGCTCCGGATGGAACATGGGTTT 749 Query 716 GGTTGTTTCGGTCTTGGAAGAAGACGAAGATGATCAAGGCATTTATGGAAGCGATGCTCT 775 |||||||||||||||||||||||||||||||| ||||||||| || ||| | |||||||| Sbjct 750 GGTTGTTTCGGTCTTGGAAGAAGACGAAGATGGTCAAGGCATCTACGGAGGAGATGCTCT 809 Query 776 GTCTCTTTCAGCTTGGTATAGAAAAGGACATGAGAAGCGTGACCTCTGGTTGATGTTAAT 835 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 810 GTCTCTTTCAGGTTGGTATAGAAAAGGACATGAGAAGCGTGACCTCTGGTTGATGTTAAT 869 Query 836 GTTCTTGGTCTTCAGTCTTGCGATGAGGATGCCATGTTTATACTCCAAATGCAGTGCGAG 895 ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 870 GTTCTTGGTCTTCGGTCTTGCGACAAGGATGCCATGTTTATACTCCAAATGCAGTGCGAG 929 Query 896 TGGAAATGGAGTGATGTACACTGGTTTCTATGTAGGCTTGATTTGTGTTGGGAATTTGCT 955 |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || Sbjct 930 TGGAAATGGAGTGATGTACACTGGCTTCTATGTAGGCTTGATTTGTGTTGGCAATTTACT 989 Query 956 TAAATGGGTGACTTGTCTTGCTTGTTACCATGATTGTAAAACTATGGTTTCGAGGAAGAA 1015 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| || || Sbjct 990 TAAATGGGTGACTTGTCTTGCCTGTTACCATGATTGTAAAACTATGGTTTTGAGAAAAAA 1049 Query 1016 GCATGATGTTGAACAAGCTAAAATTCTTGCTGCTTAACGAG--TTTGGCTGAGATCAATT 1073 || |||||| ||||||||||||| || |||||||||| ||| ||||||||||||||||| Sbjct 1050 GCGTGATGTAGAACAAGCTAAAACTCCTGCTGCTTAA-GAGACTTTGGCTGAGATCAATT 1108 Query 1074 CAAAGTGTGAATCTTTAT 1091 |||||||||||||||||| Sbjct 1109 CAAAGTGTGAATCTTTAT 1126 > AT1G23840.1 | Symbols: | unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23850.1); Has 53 Blast hits to 48 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8424297-8425376 REVERSE LENGTH=1080 Length=1080 Score = 252 bits (136), Expect = 6e-66 Identities = 211/246 (86%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 1 AAAGAGATCAACAGATGGAGACCAAGAGCGAAGAGAAGCTAAGTGTCATCGAACTTCTAA 60 ||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||| Sbjct 26 AAAGAGATCAACAAATGGAGACAAAGAGCGAGGAGAAGCTAAGTGTCATCGAACTACTAA 85 Query 61 AACTAGCTGC-GAAGCTACTCTTCGGTAATAGCAATCTC-TTGCTCTTCCTATGCCTCTG 118 ||| |||| | ||||||||||| ||||| | ||||||| | |||||||| | || || Sbjct 86 AACGAGCT-CTTAAGCTACTCTTTGGTAACATCAATCTCGCT-CTCTTCCTCTTTCTTTG 143 Query 119 CTCTCTCCCACTGTTTTGTTTCTTGATCTTCTTTGAGCTCTCACTCCAAACCACTGTCTC 178 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 144 CTCTCTCCCACTGTTTTGTTTCTTGATCTTCTTCGAGCTCTCCCTCCAAACCACTGTCTC 203 Query 179 TCTCACTTCC-CAATTCCTCTTCAAACTACTCACT-CTTGGAG-AGGACTTGCCAGAGAA 235 ||| ||||| || | | ||| ||||||| ||| | || | || |||||||| | ||||| Sbjct 204 ACTCGCTTCCACA-TACATCTCCAAACTAGTCAATTCT-G-AGGAGGACTTGTCGGAGAA 260 Query 236 TGATCT 241 |||||| Sbjct 261 TGATCT 266 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53463580425 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5