BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472646
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23860.1 | Symbols: SRZ-21, SRZ21, RSZP21, RSZ21, At-RSZ21 |... 761 0.0
> AT1G23860.1 | Symbols: SRZ-21, SRZ21, RSZP21, RSZ21, At-RSZ21
| RS-containing zinc finger protein 21 | chr1:8427356-8429319
REVERSE LENGTH=1378
Length=1378
Score = 761 bits (412), Expect = 0.0
Identities = 532/587 (91%), Gaps = 20/587 (3%)
Strand=Plus/Plus
Query 592 TGTTCGTGTTTTATTAGACAATTGGATTTGGTGAATTCTCCTTCAAGCTGTTTTCCAACA 651
|||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 788 TGTTCGAGTTTTATTAGACAATTGGATTTGGTGAGTTCTCCTTCATGCTGTTTTCCAACA 847
Query 652 GCCGTCTTGACTTATTCTCTTTAACACGCGCTGGCTTGCTGTCTTCACTCAGCGTGCTTG 711
|||||||||||||||||||| |||||||| ||||| |||||||||||| |||||| ||||
Sbjct 848 GCCGTCTTGACTTATTCTCTATAACACGCACTGGCCTGCTGTCTTCACACAGCGTCCTTG 907
Query 712 AACCCCTACACTTGAGGTCGTTCTTTCGTATCCATAAAATATGTTTTGTGTCTTGTTGAA 771
||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 908 AACCCCTACACTTGAGGTCGTTCTTTCGTATCCAT--AA-ATGTTTTGTCTCTTGTTGAA 964
Query 772 TGCACTTACCTTATCATATAATATGTGTGACATATCTAAAAGGCTCAACTGTTTCCACTC 831
||||||| |||||| ||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 965 TGCACTTTCCTTAT--TAT-ATA-----GACATATCTAAAAAGCTCAACTGTTTCCACTC 1016
Query 832 TTTTTCCCTTGTGAGGTATGATTTATCGGGGATCTCTCCGCAGCTGC-GCTGCATCTTAC 890
||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 1017 TTTTTCCCTTGTGAGGTATGATTTATCGGGGATCTCTTGGCAGCA-CAGCTGCATCTTAC 1075
Query 891 TCTCCCCTCAACTTAGCTTTG-CTATGAATCTGCATCGTCAACTCGACCATCATCAGCTA 949
||||||| |||||||| ||| | ||||||||||||| |||||||||||| |||||||||
Sbjct 1076 TCTCCCCACAACTTAGTTTTATC-ATGAATCTGCATCCTCAACTCGACCAACATCAGCTA 1134
Query 950 GA-TTTGCTTGTTACATTGTGTGACTTTTAGATTGCCCTGCTCTTTACTCACAACTCTTA 1008
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1135 GAATTTGCTTGTTACATTGTGTGACTTTTAGATTGCCCTGCTCTTTACTCACCACTCCTA 1194
Query 1009 CCCCAA-TCTGCAAACCAAGCTTCTAAGGAGAAGGACAAAGCTGTTTCTTCACCCCGCCC 1067
|||||| ||||||| ||||||||||| ||||| ||| || |||||||||||||||| ||
Sbjct 1195 CCCCAAGTCTGCAA-CCAAGCTTCTATTGAGAAAGACGAATCTGTTTCTTCACCCCGTCC 1253
Query 1068 TCTCCCTCGCTCTCAGCTGCTTTATCACCCCTTGGGTTCTCTGCTCACTTTTGTTTT-CG 1126
||| ||| |||||| |||||| ||||||| ||||| |||||| |||||||||||||| ||
Sbjct 1254 TCTTCCTAGCTCTCGGCTGCTATATCACCACTTGGTTTCTCTACTCACTTTTGTTTTTCG 1313
Query 1127 GTCAACTTTGC-ACACATCTGTTGGTGGATCACACACTTACATTAAA 1172
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1314 GTCAACTTTGTTACACATCTGTTGGTGGATCACACACTTACATTAAA 1360
Score = 586 bits (317), Expect = 2e-166
Identities = 368/393 (94%), Gaps = 2/393 (1%)
Strand=Plus/Plus
Query 1 ATGACGAGGGTTTACGTCGGGAATTTGGACCCAAGGGTCACCGAAAGAGAACTCGAAGAC 60
|||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 80 ATGACGAGGGTTTATGTCGGGAATTTGGACCCACGCGTCACCGAAAGAGAACTCGAAGAC 139
Query 61 GAATTCAGAATC-TTCGGCGTTCTTCGCAATGTTTGGGTAGCTCGTAGGCCTCCTGGCTA 119
||||||| | | ||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 140 GAATTCA-AGGCCTTCGGTGTTCTTCGCAATGTCTGGGTAGCTCGTAGACCTCCTGGCTA 198
Query 120 CGCTTTCCTCGAGTTCGATGACGAGAGAGATGCTTTGGATGCAATTAGGGCATTGGATCG 179
||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 199 CGCATTCCTCGAGTTCGATGACGAAAGAGATGCTTTGGATGCAATCAGCGCATTGGATCG 258
Query 180 AAAGAATGGGTGGCGTGTGGAGCTTTCTCATAAAGATAAAGGTGGTCGTGGAGGCGGTGG 239
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 259 AAAGAATGGGTGGCGTGTGGAGCTTTCTCATAAAGATAAAGGAGGTCGTGGAGGTGGTGG 318
Query 240 TGGTCGTCGTGGCGGTATTGAGGATTCTAAGTGCTATGAGTGCGGTGAACTTGGACATTT 299
|||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 319 TGGTCGTCGTGGAGGTATTGAGGATTCCAAGTGCTATGAGTGTGGTGAGCTTGGACATTT 378
Query 300 TGCTCGGGAGTGTCGCCGTGGTCGAGGCTCTGCGAGGCGTAGAAGCCCTAGTCCTCGTCG 359
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 379 TGCTCGCGAGTGTCGCCGTGGTCGAGGCTCTGTGAGGCGTAGAAGCCCTAGTCCCCGTCG 438
Query 360 TCGTAGGAGTCCAGATTATGGGTATGGACGCAG 392
|||||||||||||||||||||||||| |||||
Sbjct 439 TCGTAGGAGTCCAGATTATGGGTATGCTCGCAG 471
Score = 209 bits (113), Expect = 4e-53
Identities = 148/163 (91%), Gaps = 10/163 (6%)
Strand=Plus/Plus
Query 391 AGCTACAGCAGATCCCCTCCTTATCGTGGTTCGCGCCGGGATTCTCCTCGCCGCAGAGAC 450
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 542 AGCTACAGCAGATCCCCTCCTTATCGTGGTTCACGCCGTGATTCTCCTCGCCGCAGAGAC 601
Query 451 TCACCCTATGGTCGACGTTCGCCATATGCCAATGGGTAAGGTGTGAAACTGGACCCTGAA 510
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 602 TCGCCCTATGGTCGACGTTCGCCATATGCCAATGGG---G-TGTGAAACTGGACCCTGAA 657
Query 511 GAGAAAGAAGATATTAAAACTTCTATGCTATGATGCTATATCT 553
|||||||||| ||||| || | |||||||||||||||||
Sbjct 658 GAGAAAGAAGCTATTA---CTA--A-GCTATGATGCTATATCT 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57529824570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5