BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472649
Length=1990
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23880.1 | Symbols: | NHL domain-containing protein | chr1:... 2689 0.0
AT1G70280.2 | Symbols: | NHL domain-containing protein | chr1:... 830 0.0
> AT1G23880.1 | Symbols: | NHL domain-containing protein | chr1:8435657-8438745
FORWARD LENGTH=2215
Length=2215
Score = 2689 bits (1456), Expect = 0.0
Identities = 1750/1885 (93%), Gaps = 47/1885 (2%)
Strand=Plus/Plus
Query 135 ACATATTCCAGTAACAGTTATATATGTGTAAAATATCTTAAACAATAGTT---T-ACA-A 189
|||||||||||||||| | || |||||| |||||| || || | || || | | | |
Sbjct 349 ACATATTCCAGTAACA-AT-TACATGTGT-AAATATTTTGAAGATTA-TTCCCTGA-ATA 403
Query 190 AAATCTTAAATTAATCAGC-AAAACCTTAATA-ATCTTTTTAATTGTTGCGCCGACGTTT 247
||||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||
Sbjct 404 AAATCTTAAATTAATCACCAAAAACCTTAATATTTTTTTTTAATTGTTGCGCCGACGTTT 463
Query 248 ATGGCATGACCAATGTGTCActtttctacgcctctc--tcttttttgtttttgttgc-tt 304
|||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||
Sbjct 464 ATGGCATGACCAATGTGTCACTTTTCTACGCCTCTCTTTCTATTTT-ATTTTGTTGCTTT 522
Query 305 -tc-tcttcttcaacctttctccttcc---ttttttcACAGATTGTCAC------T-ACT 352
|| ||||||||||||||||||||||| ||||||| ||||||||||| | |||
Sbjct 523 CTCTTCTTCTTCAACCTTTCTCCTTCCTTTTTTTTTCTCAGATTGTCACGAAGTGTCACT 582
Query 353 ACTTCATTCAACATTTCAAACCACCTCTGTTCATCTTTCTCACTTCGCTAATCGTTTCTC 412
||||| |||||||||| ||| || ||||||||||||| ||||||| |||| ||||
Sbjct 583 ACTTCGTTCAACATTTTAAA-CA------TTCATCTTTCTCATTTCGCTATTCGTCTCTC 635
Query 413 CTCAACTTTAGTGATGAGTAGGCATTTTCTGTTTCTGGGTATTATCATTC-TCATCCTCT 471
|||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 636 CTCAACTTTAGTAATGAGTAGGCATTTTCTGTTTCTGGGTATTATCATTCTTC-TCTTCT 694
Query 472 CTGGGTTTGTAGCTTCAGCTCCTTCACCAA-TTCTTCTTGCAG-AGATTGTTAATAGTTT 529
||| |||||| ||||||||||||||| ||| ||| | ||| | ||||||||||||||||
Sbjct 695 CTGCGTTTGTTGCTTCAGCTCCTTCATCAACTTC-ACCTGC-GAAGATTGTTAATAGTTT 752
Query 530 CATCTCGAATCATGGCACTTCCTTAATGAAATGGTTATGGTCTCTCTCTTTCAAAACCAC 589
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 753 CATCTCAAATCATGGCACTTCCTTATTGAAATGGTTATGGTCTCTCTCTTTCAAAACCAC 812
Query 590 CACTAAAACAGCTGTTTCTACGAAATCGATGGTGAAATTTGAAAATGGGTATTCAGTGGA 649
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 813 CACTAAAACAGCTGTTCCTACGAAATCGATGGTGAAATTCGAAAATGGGTATTCAGTGGA 872
Query 650 AACGGTGTTAGACGGAAGCAAACTCGGTATCGAACCTTATTCTCTTCAGGTCTTA-CCTA 708
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 873 AACGGTGTTAGACGGAAGCAAACTCGGTATCGAACCTTATTCTATTCAGGTCTTATCC-A 931
Query 709 ATGGCGAATTACTTATTCTGGATTCTCAGAATAGTAACCTTTACAAGATTTCATCTTCTC 768
|||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 932 ATGGCGAATTGCTTATTCTGGATTCTCAGAATAGTAACATTTACCAGATTTCATCTTCTC 991
Query 769 TTTCCCTTTATAGCAGACCGAGGCTGGTTACTGGCTCCCCTGAAGGATATCCGGGTCATG 828
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 992 TTTCCCTTTATAGCAGACCCAGGCTAGTTACTGGCTCCCCTGAAGGATATCCGGGTCATG 1051
Query 829 TGGATGGAAGATTGAGAGACGCGAGATTGAACAATCCTAAGGGACTCACGGTTGATGATA 888
|||| || ||||| || |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1052 TGGACGGTAGATTAAGGGACGCGAGGTTGAACAATCCTAAGGGACTCACAGTTGATGATA 1111
Query 889 GAGGAAATATCTATGTTGCAGATACTGTGAATAATGCTATCAGGAAGATCAGTGAAGCAG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 GAGGAAATATCTATGTTGCAGATACTGTGAATAATGCTATCAGGAAGATCAGTGAAGCAG 1171
Query 949 GAGTCACAACCATTGCTGGGGGAAAAATGGTTCATGGGGGAGGTCATGTGGATGGTCCAA 1008
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1172 GAGTCACAACCATTGCTGGGGGGAAAATGGTTCGTGGGGGAGGTCATGTGGATGGTCCAA 1231
Query 1009 GTGAAGATGCAAAGTTTTCAAATGATTTTGATGTTGTTTATCTCGGAAGCAGTTGTTCCT 1068
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1232 GTGAAGATGCAAAGTTTTCAAATGATTTTGATGTTGTTTATCTCGGGAGCAGTTGTTCCT 1291
Query 1069 TGCTAGTCATTGACCGCGGGAACCAAGCCATCAGAGAGATTCAACTCCATTTCGACGACT 1128
|||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1292 TGCTAGTCATTGACCGAGGAAACCAAGCCATCAGAGAGATTCAACTCCATTTTGACGACT 1351
Query 1129 GTGCTGATCAGTATGGAAGTGGCTTTCCTCTTGGGATTGCAGTTCTTGTAGCAGCAATTT 1188
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 1352 GTGCTGATCAGTATGGAAGTGGCTTTCCTCTGGGGATTGCAGTTCTTGTAGCGGCAGTTT 1411
Query 1189 TCTTTGGCTATATGCTGGCTTTGTTGCAACGTAGACTCAGTTCTATCATTTCATATCATA 1248
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1412 TCTTTGGCTATATGCTGGCCTTGTTGCAACGTAGACTCAGTTCTATCGTTTCATATCATA 1471
Query 1249 CTGATCAAGAAGTATTTGAAGCTGTGCCTGATCAAGATCCTATAAAACCGGTCAGACCAC 1308
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 CTGATCAAGAAGTGTTTGAAGCTGTGCCTGATCAAGATCCTATAAAACCGGTCAGACCAC 1531
Query 1309 CGCTGATTCCAACTGGAGACGAGCAAGAAAAACAAGAAGAAAGCTTCCTTGGAACGTTGC 1368
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 CGCTAATTCTAACTGGAGACGAGCAAGAAAAACAAGAAGAAAGCTTCCTTGGAACGTTGC 1591
Query 1369 AGATATTCATTTCGAATGTTTGGGTGTTTTCTGTGGAGCTGTTCAGTGGAATGTTTCCTG 1428
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1592 AGATATTCATTTCAAATGCTTGGGTGTTTTCTGTGGAGCTGTTCAGTGGAATGTTTCCCG 1651
Query 1429 GTCTCAGAAAGAAACAGACAGTTGGCTTCAACTTCAACCATCAAGAAACAAAGCATTCTG 1488
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1652 GTCTCAGAAAGAAGCAGACAGTCGGCTTGAACTTCAACCATCAAGAAACAAAGCATTCTG 1711
Query 1489 CCTTTAGCACAACTTCATGGCCAATTCAAGAGAGCTTTGTAATACACAACAAAGATGAAC 1548
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1712 CTTTTAGCACAACTTCATGGCCAATTCAAGAAAGCTTTGTAATACACAACAAAGATGAAC 1771
Query 1549 CACCTCCCATCGAGTCCAGGAACCCCACTCCCGGAAAAATTTATCCTTTCATGTCCAAAG 1608
|||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1772 CACCTCCCGTCGAGTCCAGGAACGCCACTCCTGGAAAAATTTATCCTTTCATGTCCAAAG 1831
Query 1609 ATGCAGCAGAGAAAATGCAACAGCTGCGCCAAAGCCGTGCCTTGTACAGAAGCTTAGATG 1668
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1832 ATGCAACAGAGAAAATGCAACAGCTGCGCCAAAGCCGTGCCTTGTACAGAAGCTTGGACG 1891
Query 1669 CCGAATTCCTCCAGGAGCAGCAGCAACAGAAGCATCAGCAGCATCACCGTAGGCATCACG 1728
|||||||||||||||||||||| ||| |||||||||||||| |||||| ||||||||||
Sbjct 1892 CCGAATTCCTCCAGGAGCAGCAACAAGAGAAGCATCAGCAGTATCACCATAGGCATCACT 1951
Query 1729 CAACGATCCCACACACTGTTTATGAGCGGAGCAGCGAGAAGAGTAATGAGATTGTGTTTG 1788
|||| |||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1952 CAACAATCCCATACACTCTTTATGAGCAGAGCAGCGAGAAGACTAATGAGATTGTGTTTG 2011
Query 1789 GGCCGGGCCAGGAGCAAGACCACATGAATACACATCAGAATATCCACTACAGAGCTCACC 1848
|||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 2012 GGCCAGGCCAGGAGCAAGACCAGATGAATACTCATCAGAATATCCACCACAGAGCTCACC 2071
Query 1849 AATTTGTGAGTTACCCATATGGATACTATTCATAGACATGAGAAGTTGCTTAATACGATA 1908
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2072 AATTTGTGAGTTACCCATATGGATACTATTCATAGACATGAGAAGTTGCTTAATATGATA 2131
Query 1909 GTAGTAGCA-A--TTGGGAATTCAGGTATAGCTGTTTTGAGATTTGTTGAGAAGGCACAT 1965
||||||| | | |||||||||||||||||| | |||| | ||||||||||||||||||
Sbjct 2132 GTAGTAGTAGAGATTGGGAATTCAGGTATAGTT-TTTTAAAATTTGTTGAGAAGGCACAA 2190
Query 1966 TAGGGATTTGGGTATTTAGATCTCT 1990
|||||||||||||||||||||||||
Sbjct 2191 TAGGGATTTGGGTATTTAGATCTCT 2215
Score = 128 bits (69), Expect = 2e-28
Identities = 88/96 (92%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 1 ATCTCTCTCACTGTTGTTTTCTTGTTTCTTTAGAATTGCAG-GTTTTAC-CTCTTTGTAT 58
|||||||||||||||||||||||||||||||||||| |||| |||| | ||||||||||
Sbjct 1 ATCTCTCTCACTGTTGTTTTCTTGTTTCTTTAGAATCGCAGTTTTTTGCTCTCTTTGTAT 60
Query 59 AGAAGAAAGTCTCTGGTGGTTTGTAATTTACACGGA 94
|||||||||||||||||||||||||||||||||
Sbjct 61 ---AGAAAGTCTCTGGTGGTTTGTAATTTACACGGA 93
> AT1G70280.2 | Symbols: | NHL domain-containing protein | chr1:26465893-26468706
REVERSE LENGTH=1958
Length=1958
Score = 830 bits (449), Expect = 0.0
Identities = 785/943 (83%), Gaps = 39/943 (4%)
Strand=Plus/Plus
Query 426 ATGAGTAG-GCATTTTCT-GTTTCTGGGTATTATCATTCTCA-TCCTCTCTGGGTTTGTA 482
||| |||| | ||||||| | |||| ||||| ||||||| | | ||||||||| |||||
Sbjct 236 ATGGGTAGAG-ATTTTCTAG-TTCTAAGTATTCTCATTCT-ACTTCTCTCTGGGATTGTA 292
Query 483 GCTTCAGCTCCTTCA-CCAATTCTTCTTGCAGAGATTGTTAAT-AGTTTCATCTCGAATC 540
|||||||||||||| | ||||| || |||| ||||| ||||| |||| ||||| ||||
Sbjct 293 TCTTCAGCTCCTTCAGCTAATTC-TCCTGCAAAGATTCTTAATGGGTTT-ATCTCAAATC 350
Query 541 ATGGCACTTC-CTTAATGAAATGGTTATGGTCTCTCTCTTTCAAAACCACCACTAAAACA 599
||||| |||| | ||||||||||||||||| || | |||||||||| || ||||||
Sbjct 351 ATGGCTCTTCAC-TAATGAAATGGTTATGG----TCAC--TCAAAACCACAACCAAAACA 403
Query 600 GCTGTTTCTACGAAATCGATGGTGAAATTTGAAAATGGGTATTCAGTG--GAAACGGTGT 657
|| || | |||| ||||||||||||||| ||||||||||| | |||| || || ||||
Sbjct 404 ACTATTGCAACGAGATCGATGGTGAAATTCGAAAATGGGTA-T-AGTGTAGAGACTGTGT 461
Query 658 TAGACGGAAGCAAACTCGGTATCGAACCTTATTCTCTTCAGGTCTTACCTAATGGCGAAT 717
| || ||||| ||||| ||||| ||||| |||||| || | |||||||| || || || |
Sbjct 462 TTGATGGAAGTAAACTTGGTATTGAACCGTATTCTATTGAAGTCTTACCAAACGGAGAGT 521
Query 718 TACTTATTCTGGATTCTCAGAATAGTAACCTTTACAAGATTTCATCTTCTCTTTCCCTT- 776
|||||||||| |||||| |||| |||||| | |||||||| ||||||||||||| | ||
Sbjct 522 TACTTATTCTTGATTCTGAGAACAGTAACATCTACAAGATCTCATCTTCTCTTT-CATTA 580
Query 777 TATAGCAGACCGAGGCTGGTTACTGGCTCCCCTGAAGGATATCCGGGTCATGTGGATGGA 836
|||||||| || || ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 581 TATAGCAGGCCAAGACTGGTTACTGGCTCCCCTGAAGGATATCCAGGTCATGTTGACGGG 640
Query 837 AGATTGA-GAGACGCG-AGATTGAACAATCCTAAGGGACTCACGGTTGATGATAGAGGAA 894
||||| | | || ||| || ||||| |||||||||| || ||||||||||| |||||||
Sbjct 641 AGATT-ACGTGATGCGAAG-CTGAACCATCCTAAGGGGCTTACGGTTGATGACAGAGGAA 698
Query 895 ATATCTATGTTGCAGATACTGTGAATAATGCTATCAGGAAGATCAGTGAAGCAGGAGTCA 954
|||| ||||| || ||||||||||||||||||||| ||||||| ||||||| |||||| |
Sbjct 699 ATATATATGTGGCTGATACTGTGAATAATGCTATCCGGAAGATAAGTGAAGGAGGAGTTA 758
Query 955 CAACCATTGCTGGGGGAAAAATGGTTC-ATGGGGGAGGTCATGTGGATGGTCCAAGTGAA 1013
|||| ||||| ||||| |||| ||||| | ||||| ||||||||||| |||||||||
Sbjct 759 CAACTATTGCCGGGGGCAAAACGGTTCGA-AATGGAGGGCATGTGGATGGACCAAGTGAA 817
Query 1014 GATGCAAAGTTTTCAAATGATTTTGATGTTGTTTATCTCGGAAGCAGTTGTTC-CTTGCT 1072
|||||||||||||||||||||||||||||||||||| | ||||| |||||||| || |||
Sbjct 818 GATGCAAAGTTTTCAAATGATTTTGATGTTGTTTATGTTGGAAGTAGTTGTTCTCT-GCT 876
Query 1073 AGTCATTGACCGCGGGAACCAAGCCATCAGAGAGATTCAACTCCATTTCGACGACTGTGC 1132
|| |||||||| || ||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct 877 TGTTATTGACCGTGGAAACAAAGCTATCAGAGAGATTCAACTCCATTTCGATGACTGTGC 936
Query 1133 TGATCAGTATGGAAGTGGCTTTCCTCTTGGGATTGCAGTTCTTGTAGCAGCAATTTTCTT 1192
| ||||||||||||| || ||||||||||||||||| |||||||| || ||| ||||||
Sbjct 937 TTATCAGTATGGAAGCGGGTTTCCTCTTGGGATTGCTGTTCTTGTTGCTGCAGGTTTCTT 996
Query 1193 TGGCTATATGCTGGCTTTGTTGCAACGTAGACTCAGTTCTATCATTTCATATCATACTGA 1252
||| |||||||| ||| |||||||||| ||| || | |||||| | || | ||||| |||
Sbjct 997 TGGTTATATGCTAGCTCTGTTGCAACGAAGAGTCGGCTCTATCGTGTCTTCTCATAATGA 1056
Query 1253 TCAAGAAGTATTTGAAGCTG-TGCCTGATCAAGATCCTATAAAACCGGTC-AGACCACCG 1310
||||||| | || ||||||| | ||||||||| | ||||| |||| || |||||| |
Sbjct 1057 TCAAGAAATGTTCGAAGCTGAT-CCTGATCAAAAGCCTATGAAACAT-TCCAGACCATCT 1114
Query 1311 CTGATTCCAACTGGAGACGAGCA---AGAAAAACAAGAAGAAA 1350
|||||||| ||||||||||||| ||| |||||||| ||||
Sbjct 1115 CTGATTCCGGCTGGAGACGAGCAGCTAGAGAAACAAGAGGAAA 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98593870380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5