BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472652
Length=3183
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23900.1 | Symbols: GAMMA-ADAPTIN 1, Gamma-ADR | gamma-adapt... 4669 0.0
AT1G23940.1 | Symbols: | ARM repeat superfamily protein | chr1... 1074 0.0
AT1G23965.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 261 3e-68
> AT1G23900.1 | Symbols: GAMMA-ADAPTIN 1, Gamma-ADR | gamma-adaptin
1 | chr1:8441171-8447519 FORWARD LENGTH=3141
Length=3141
Score = 4669 bits (2528), Expect = 0.0
Identities = 2832/2978 (95%), Gaps = 24/2978 (1%)
Strand=Plus/Plus
Query 179 TCCTCGTAAAGTTACCGGTGGACCAAGGTCCAACTCTTGAACATCTCAAATCATGAATCC 238
||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 92 TCCTCGTAAAGTTGCCGGTGGACCAAGGTCCAACTCTTGAACACCCCAAATCATGAATCC 151
Query 239 CTTTTCTTCTGGTACTCGTCTAAGGGACATGATCCGTGCCATAAGAGCATGTAAAACAGC 298
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 152 CTTTTCTTCTGGTACTCGTTTAAGGGACATGATCCGTGCCATAAGAGCATGCAAAACAGC 211
Query 299 TGCGGAGGAGCGTGCTGTTGTAAGAAAAGAGTGTGCCGATATTCGAGCATTAATTAATGA 358
|||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 212 TGCGGAGGAGCGAGCTGTTGTAAGAAAGGAGTGTGCCGATATTCGAGCATTGATTAATGA 271
Query 359 AGATGACCCGCACGATAGGCACCGGAACCTTGC-AAAGCTCATGTTTATACACATGTTGG 417
|||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||| |||
Sbjct 272 AGATGACCCGCATGATCGGCACCGGAACCTTGCGAAA-CTCATGTTTATACACATGCTGG 330
Query 418 GTTA-CCCGACACACTTTGGGCAGATGGAGTGCTTGAAGCTAATTGCATCTCCTGGATTT 476
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GTTATCCC-ACACACTTTGGGCAGATGGAGTGCTTGAAGCTAATTGCATCTCCTGGATTT 389
Query 477 CCAGAGAAGAGGATTGGATATCTTGGGTTAATGTTGCTTCTTGATGAGAGACAAGAAGTC 536
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 390 CCAGAGAAGAGGATTGGATATCTAGGGCTAATGTTGCTTCTTGATGAGAGACAAGAAGTG 449
Query 537 TTGATGCTTGTCACAAATTCGTTAAAACAAGATCTTAATCACTCGAACCAGTATGTTGTA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TTGATGCTTGTCACAAATTCGTTAAAACAAGATCTTAATCACTCGAACCAGTATGTTGTA 509
Query 597 GGACTGGCTCTCTGTGCTTTAGGGAATATTTGTTCAGCGGAAATGGCCCGTGATCTTGCG 656
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 510 GGACTTGCTCTCTGTGCTTTAGGGAATATTTGTTCAGCAGAAATGGCCCGTGATCTTGCG 569
Query 657 CCAGAAGTAGAAAGATTAATCCAGTTTCGTGACCCTAATATCCGAAAGAAGGCGGCGCTT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 CCAGAAGTAGAAAGATTAATCCAGTTTCGTGACCCTAATATCCGAAAGAAGGCGGCGCTT 629
Query 717 TGCTCTACGAGAATAGTAAGGAAAGTTCCAGATCTTGCAGAAAACTTTGTAAACGCTGCT 776
|||||||| |||||| ||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 630 TGCTCTACTAGAATAATAAGGAAAGTTCCAGATCTAGCAGAAAACTTCGTAAATGCTGCT 689
Query 777 GCTTCCTTGCTTAAAGAAAAGCATCATGGGGTTCTTATAACAGGAGTTCAACTTTGTTAT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GCTTCCTTGCTTAAAGAAAAGCATCATGGGGTTCTTATAACAGGAGTTCAACTTTGTTAT 749
Query 837 GAATTATGCACGATTAGTGATGAAGCCCTAGAGTACTTCAGAACGAAATGCACGGAGGGA 896
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 750 GAATTATGCACGATTAATGATGAAGCCCTAGAGTACTTCAGAACGAAATGCACAGAGGGA 809
Query 897 CTTATAAAAACTTTGAGGGATATGACTAATAGCGCATATCAGCCTGAGTATGATGTTGCA 956
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 810 CTGATAAAAACTTTGAGGGATATTACTAATAGCGCATATCAGCCTGAGTATGATGTTGCA 869
Query 957 GGGATCACAGACCCTTTTCTTCACATACGGTTGCTCAGGCTCCTGCGTGTTTTAGGCCAG 1016
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 870 GGGATCACAGACCCTTTTCTCCACATACGGTTGCTCAGGCTCTTGCGTGTTTTAGGCCAG 929
Query 1017 GGTGACGCTGATGCTAGTGATTTGATGACTGATATACTTGCCCAGGTGGCAACAAAAACT 1076
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 930 GGTGATGCTGATGCTAGTGATTTGATGACAGATATACTTGCACAGGTGGCAACAAAAACT 989
Query 1077 GAATCAAACAAAAACGCAGGGAATGCGGTACTCTATGAGTGCGTTGAAACAATCATGGCC 1136
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 990 GAATCAAACAAAAACGCAGGGAATGCGGTACTCTATGAGTGTGTTGAAACAATCATGGCC 1049
Query 1137 ATTGAAGACACCAATAGCTTGCGTGTGCTTGCTATCAATATCTTGGGAAGATTCTTATCT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 ATTGAAGACACCAATAGCTTGCGTGTGCTTGCTATCAATATCTTGGGAAGATTCTTATCT 1109
Query 1197 AACCGCGACAATAACATCAGGTATGTTGCATTAAACATGCTGATGAAAGCAATCACTTTC 1256
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1110 AACCGCGACAATAACATCAGATATGTTGCATTAAACATGCTGATGAAAGCTATCACTTTC 1169
Query 1257 GATGATCAAGCAGTGCAAAGGCACAGAGTTACAATTTTGGAATGTGTTAAGGACCCAGAT 1316
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1170 GATGATCAAGCAGTGCAAAGGCACAGAGTTACAATTTTGGAATGTGTGAAGGACCCAGAT 1229
Query 1317 GCTTCTATCCGGAAAAGAGCTCTGGAGCTTGTCACTCTTTTGGTGAATGAGAATAATGTC 1376
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1230 GCTTCTATCCGGAAAAGAGCTCTTGAGCTTGTCACTCTTTTGGTGAATGAAAACAATGTC 1289
Query 1377 ACACAACTGACAAAGGAGCTAATTGATTATTTGGAAATCAGCGACGAAGATTTTAAGGAA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 ACACAACTGACAAAGGAGCTAATTGATTATTTGGAAATCAGCGACGAAGATTTTAAGGAA 1349
Query 1437 GATCTTAGTGCAAAAATTTGTTTTATCGTCGAAAAGTTTTCTCCAGAAAAACTATGGTAC 1496
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1350 GATCTTAGTGCAAAAATTTGTTTTATCGTTGAAAAGTTTTCTCCAGAAAAACTATGGTAC 1409
Query 1497 ATTGATCAGATGCTTAAGGTTCTGTGTGAGGCTGGAAAGTTTGTGAAAGATGATGTGTGG 1556
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 ATTGATCAGATGCTCAAGGTTCTGTGTGAGGCTGGAAAGTTTGTGAAAGATGATGTGTGG 1469
Query 1557 CACGCGCTTATTGTTGTCATAAGCAATGCATCAGAGCTTCATGGATATACAGTTAGGGCA 1616
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 CATGCACTTATTGTTGTCATAAGCAATGCATCAGAGCTTCATGGATATACAGTTAGGGCC 1529
Query 1617 TTATACAAAGCAGTCTTGACGTATTCGGAACAGGAGACCCTTGTTCGAGTGGCGGTGTGG 1676
|| |||||| |||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 1530 TTGTACAAATCAGTCTTGACTTATTCGGAACAGGAGACCCTTGTCCGAGTGGCGGTATGG 1589
Query 1677 TGCATTGGGGAATATGGCGATCTGTTGGTTAACAATGAGGGGATGCTTGGTATTGAAGAT 1736
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1590 TGCATTGGGGAATATGGTGATCTGTTGGTTAACAATGTGGGGATGCTTGGTATTGAAGAT 1649
Query 1737 CCAATAACGGTAACGGAATCGGATGCAGTGGACGTTATCGAGGAGGCCATTACTCGCCAT 1796
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1650 CCAATAACGGTAACGGAATCTGATGCAGTGGACGTTATCGAGGATGCCATTACTCGCCAT 1709
Query 1797 AACTCAGATTCGACTACAAAAGCAATGGCATTGGTTGCTCTACTGAAGCTGTCATCCCGC 1856
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1710 AACTCAGATTCGACTACAAAAGCAATGGCATTGGTTGCTCTACTGAAGTTGTCATCCCGC 1769
Query 1857 TTTCCTTCTATATCAGAGAGAATTAAAGACATAATTGTGAAGCAGAAAGGAAGCCTTCTC 1916
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 TTTCCTTCTATTTCAGAGAGAATTAAAGACATAATTGTGAAGCAGAAAGGAAGCCTTCTC 1829
Query 1917 CTTGAAATGCAGCAGAGAGCTATTGAATTCAATTCTATAGTTGACAGGCATAAAAATATC 1976
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1830 CTTGAAATGCAGCAGAGAGCTATTGAATACAATTCTATAGTTGACAGGCATAAAAATATC 1889
Query 1977 AGGTCTACTCTGGTTGACAGAATGCCGGTACTGGATGAGGCTACTTTCAATGTGAGGAGG 2036
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1890 AGGTCTTCTCTGGTTGACAGAATGCCGGTACTGGATGAGGCTACTTTCAATGTGAGGAGG 1949
Query 2037 GCCGGCTCTTTTCCTGCATCAGCTTCAACAATGGCAAAGCCTTCAGTTAGTCTTCCAAAT 2096
|||||||||||||||||||||| |||||| ||||| |||||||||||||| |||| ||||
Sbjct 1950 GCCGGCTCTTTTCCTGCATCAGTTTCAACCATGGCCAAGCCTTCAGTTAGCCTTCAAAAT 2009
Query 2097 GGTGTTGAGAAACCTGTTGTAGCTCCTCTTGTGGATTTGCTAGACCTAGGTTCAGACGAT 2156
||||||||||||| | ||| |||||||||||||| ||||||||||||| ||| ||||||
Sbjct 2010 GGTGTTGAGAAACTTCCTGTCGCTCCTCTTGTGGACTTGCTAGACCTAGATTCTGACGAT 2069
Query 2157 ATCCTGGCTACACCTAGTTCATCTGGTCCAGATTTTCTTCAGGATCTTCTCGGTGTTGAC 2216
||| ||||| |||||||| |||||||| ||||||| |||||||||||||||||||| |||
Sbjct 2070 ATCATGGCTGCACCTAGTCCATCTGGTACAGATTTCCTTCAGGATCTTCTCGGTGTAGAC 2129
Query 2217 TTAGGAGCATCGTCATCACAACCTGGTGCAACGTTGGCTCCGAGAACC-GGCACAGATCT 2275
||||| |||||||| ||||| ||||||||| |||||| | || | |||||||||||
Sbjct 2130 TTAGGTTCATCGTCAGCACAATATGGTGCAACCCAGGCTCCAA-AAGCTGGCACAGATCT 2188
Query 2276 GTTGATGGATATTCTATCAATTGGAACACCTTCTCCTGCACAAAACAGCACATCATCTGT 2335
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2189 GTTGCTGGATATTCTATCAATTGGAACACCTTCTCCTGCACAAAACAGCACATCATCTAT 2248
Query 2336 TGATTTATTATCAACAGCTGACGTAAACAGTAATCCCTCAATTGCGCTAGACACACTTTC 2395
|| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 2249 TGGTTTATTATCAATAGCTGACGTTAACAATAATCCCTCAATTGCGCTAGACACACTTTC 2308
Query 2396 TTCACCAGCTCCACCTCACGTAGCAACGACTTCGTCCAACGGTATGTTTGATTTGTTACA 2455
||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || |
Sbjct 2309 TTCACCAGCTCCACCTCACGTAGCAACAACTTCGTCCACCGGTATGTTTGATTTGCTAGA 2368
Query 2456 TGGTCTTTCTCCAAGCCCATCGAAGGAAGCCACCAATGGTCCAGCATATCCACCAATTGT 2515
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 2369 TGGTCTTTCTCCAAGCCCATCGAAGGAAGCCACCAATGGTCCAGCTTATGCACCTATTGT 2428
Query 2516 TGCATACGAGAGCAGCTCCTTGAAGATTGAGTTCACCTTCTCAAAGGCACCAGGGAATCT 2575
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2429 TGCATACGAGAGCAGCTCCTTGAAGATTGAGTTCACCTTCTCAAAGACACCAGGGAATCT 2488
Query 2576 GCAATCGACAAATGTCCAAGCTACTTTTACTAATTTATCTCCCAATACTTTCACAGATTT 2635
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2489 GCAAACGACAAATGTCCAGGCTACTTTTACTAATTTATCTCCCAATACTTTCACAGATTT 2548
Query 2636 TATATTCCAAGCTGCTGTTCCAAAGTTCCTCCAGCTGCACTTGGATCCAGCTAGCAGTAA 2695
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2549 TATATTCCAGGCTGCTGTTCCAAAGTTCCTCCAGCTGCACTTGGATCCAGCTAGCAGTAA 2608
Query 2696 CACACTCCCGGCAAGCGGTAACGGTGCCATCACGCAGAATCTAAGAGTCACTAACAGCCA 2755
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2609 CACACTCCTGGCAAGCGGTAGTGGTGCCATCACGCAGAATCTAAGAGTCACTAACAGCCA 2668
Query 2756 GCACGGGAAGAAATCCCTTGTGATGCGCATGAGGATTGGGTACAAACTGAACGGAAAAGA 2815
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2669 GCAGGGGAAGAAATCTCTTGTGATGCGCATGAGGATTGGGTACAAACTGAACGGAAAAGA 2728
Query 2816 TGTATTAGAGGAAGGACAAGTCAGCAACTTCCCTCGCGGGTTGTAAAACTGATCGATCAG 2875
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2729 TGTATTAGAGGAAGGACAAGTCAGCAACTTCCCTCGCGGGTTGTGAAACTCATCGATCAG 2788
Query 2876 CCATTGTATTTTCAGCAGAAGGACTTGAGTGTTTCTTT-TCATCAA-CCCGACTaaaaaa 2933
||||||||||||||||| |||||||||||||||||||| | ||||| ||| |||||||||
Sbjct 2789 CCATTGTATTTTCAGCATAAGGACTTGAGTGTTTCTTTCT-ATCAAACCCAACTAAAAAA 2847
Query 2934 aGAAAGACAAGTCTAGCCCAAGCCGTTGATGCAGCAAAAGCAGCTTTCTCCTTCCAATTC 2993
||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2848 -GAAAGACAAGTCTTGCCCAAGCCGTTGATGCAGC---------TTTCTCCTTCCAATT- 2896
Query 2994 TTTTCATCTGTTTCATGAAACAAGTA---CTTTGGCCTTTGTTTGTGATTTGAGGTTCTT 3050
|||||||| |||| |||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 2897 TTTTCATCCGTTTTATGAAACAAGTAGTACTTTGGCCTTTGCTTGTGATTTGAGGTTCTT 2956
Query 3051 GGGGTTTCTTTTTGTACAAAAGTTTTGATGTTTGGAATCGGAAAGCGGTCAAGGAAGAAG 3110
||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 2957 GGGTTTTCTTTTTGTACAAAAGTTTTGATGTTTGGAATCGGAAAGTGGTCAAG-AAGTAG 3015
Query 3111 AGTTTGTCTCTCTTGTGTCTAAGACTACAAAAAACATG 3148
| |||||||||| ||| ||| |||||| |||||| |||
Sbjct 3016 AATTTGTCTCTCATGTCTCTGAGACTATAAAAAAGATG 3053
Score = 121 bits (65), Expect = 5e-26
Identities = 81/88 (92%), Gaps = 4/88 (5%)
Strand=Plus/Plus
Query 25 aaaaaaaCGAGCATCTTCCATCGAGATCCAAATCCTCAGTTTCTTTTTCATCTCTCTC-- 82
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2 AAAAAAACGAGCATCGTCCATCGAGATCCAAATCCTCAGTTTCATTTTCATCTCTCTCTC 61
Query 83 --GTATTGATCAGCTACTCGAAGCTCCG 108
|||||||||||||||||||| |||||
Sbjct 62 TCGTATTGATCAGCTACTCGAAACTCCG 89
Score = 73.1 bits (39), Expect = 2e-11
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 3145 CATGATGTATCTACTACAGTTACAATTTTCGTCTTGCAA 3183
|||||||||||||||||||||||||||||||||||||||
Sbjct 3079 CATGATGTATCTACTACAGTTACAATTTTCGTCTTGCAA 3117
> AT1G23940.1 | Symbols: | ARM repeat superfamily protein | chr1:8466094-8469346
FORWARD LENGTH=1488
Length=1488
Score = 1074 bits (581), Expect = 0.0
Identities = 734/803 (91%), Gaps = 29/803 (4%)
Strand=Plus/Plus
Query 262 GGGACATGATCCGTGCCATAAGAGCATGTAAAACAGCTGCGGAGGAGCGTGCTGTTGTAA 321
||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 404 GGGACATGATCCGTGCCGTAAGAGCATGTCAAACAGCTGCGGAGGAGCGAGCTGTTGTAA 463
Query 322 GAAAAGAGTGTGCCGATATTCGAGCATTAATTAATGAAGATGACCCGCACGATAGGCACC 381
|||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 464 GAAAAGAGTGTGCCAATATCCGAGCATTAATTAATGAAGATGACCCGCATGATAGGCACC 523
Query 382 GGAACCTTGCAAAGCTCATGTTTATACACATGTTGGGTTACCCGACACACTTTGGGCAGA 441
||||||||||||| |||||| | ||||||||| ||||||||||||||||||||| |||||
Sbjct 524 GGAACCTTGCAAAACTCATGCTCATACACATGCTGGGTTACCCGACACACTTTGTGCAGA 583
Query 442 TGGAGTGCTTGAAGCTAATTGCATCTCCTGGATTTCCAGAGAAGAGGATTGGATATCTTG 501
||||||| ||||||||||||||||||||||||||||||||| | | || || | ||
Sbjct 584 TGGAGTGTTTGAAGCTAATTGCATCTCCTGGATTTCCAGAG-A-A-GA--GG--A--TT- 633
Query 502 GGTTAATGTTGCTTCTTGATGAGAGACAAGAAGTCTTGATGCTTGTCACAAATTCGTTAA 561
|| | | || | || | | || | ||||||||||||||||| |||||||
Sbjct 634 GG---A---T--ATC-T--TG-G-G---TTAA-TGTTGATGCTTGTCACAAAGTCGTTAA 676
Query 562 AACAAGATCTTAATCACTCGAACCAGTATGTTGTAGGACTGGCTCTCTGTGCTTTAGGGA 621
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 677 AACAAGATCTTAATCACTCGAACCAGTATGTTGTAGGACTCGCTCTCTTTGCTTTAGGGA 736
Query 622 ATATTTGTTCAGCGGAAATGGCCCGTGATCTTGCGCCAGAAGTAGAAAGATTAATCCAGT 681
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 737 ATATTTGTTCAGCGGAAATGGCCCCTGATCTTGCGCCAGAAGTAGAAAGATTAGTCCAGT 796
Query 682 TTCGTGACCCTAATATCCGAAAGAAGGCGGCGCTTTGCTCTACGAGAATAGTAAGGAAAG 741
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 797 TTCGTGACCCTAATATCCGAAAGAAGGCGGCGCTTTGCTCTACTAGAATAGTAAGGAAAG 856
Query 742 TTCCAGATCTT-GCAGAAAACTTTGTAAACGCTGCTGCTTCCTTGCTTAAAGAAAAGCAT 800
|||||||| || | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 857 TTCCAGAT-TTAGTAGAAAACTTTGTAAACGCTGATGCTTCCTTGCTTAAAGAAAAGCAT 915
Query 801 CATGGGGTTCTTATAACAGGAGTTCAACTTTGTTATGAATTATGCACGATTAGTGATGAA 860
||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 916 CATGGGGTTCTAATAAGAGGAGTTCAACTTTGTTATGAATTATGCACGATTAATGATGAA 975
Query 861 GCCCTAGAGTACTTCAGAACGAAATGCACGGAGGGACTTATAAAAACTTTGAGGGATATG 920
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 976 GCCCTAGAGTACTTCAGAACGAAATGCACGGAGGGACTGATAAAATTTTTGAGGGATATT 1035
Query 921 ACTAATAGCGCATATCAGCCTGAGTATGATGTTGCAGGGATCACAGACCCTTTTCTTCAC 980
|||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1036 ACTAATTGTGCATATCAGCCTGAGTACGATGTTGCAGGGATCACAGACCCTTTTCTTCAA 1095
Query 981 ATACGGTTGCTCAGGCTCCTGCGTGTTTTAGGCCAGGGTGACGCTGATGCTAGTGATTTG 1040
| ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 AGACGGTTGCTAAGGTTCTTGCGTGTTTTAGGCCAGGGTGACGCTGATGCTAGTGATTTG 1155
Query 1041 ATGACTGATATACTTGCCCAGGT 1063
|||||| ||||||||||||||||
Sbjct 1156 ATGACTCATATACTTGCCCAGGT 1178
Score = 436 bits (236), Expect = 5e-121
Identities = 277/297 (93%), Gaps = 2/297 (1%)
Strand=Plus/Plus
Query 1821 ATGGCATTGGTTGCTCTACTGAAGCTGTCATCCCGCTTTCCTTCTATATCAGAGAGAATT 1880
|||| ||||||||||||| ||||||||| ||| ||||||||||||| ||| ||||||||
Sbjct 1 ATGGAATTGGTTGCTCTAGTGAAGCTGTTATCTGGCTTTCCTTCTATTTCAAAGAGAATT 60
Query 1881 AAAGACATAATTGTGAAGCAGAAAGGAAGCCTTCTCCTTGAAATGCAGCAGAGAGCTATT 1940
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 61 AAAGACATAATTGTGAAGCAGAAAGGAAGCCTTCTTCTTGGAATGCAGCAGAGAGCTATT 120
Query 1941 GAATTCAATTCTATAGTTGACAGGCATAAAAATATCAGGTCTACTCTGGTTGACAGAATG 2000
|| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 GAGTACAATTCTATAGTTGACAGGCATAAAAATATCAGGTCTTCTCTGGTTGACAGAATG 180
Query 2001 CCGGTACTGGATGAGGCTACTTTCAATGTGAGGAGGGCCGGCTC-TTTTCCTGCATCAGC 2059
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 181 CCGGTACTGGATGAGGCTACTTTCAATGTGAGGAGGGCCGGC-CATTTTCCTGCATCAGC 239
Query 2060 TTCAACAATGGCAAAGCCTTCAGTTAGTCTTCCAAATGGTGTTGAGAAACCTGTTGT 2116
|||||||||||| || ||||||||| ||||||||||||||||||||||||| |||
Sbjct 240 TTCAACAATGGCTCAGTTTTCAGTTAGCCTTCCAAATGGTGTTGAGAAACCTGCTGT 296
> AT1G23965.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G70270.1);
Has 30 Blast hits to 30 proteins in 8 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8480422-8481486
REVERSE LENGTH=1065
Length=1065
Score = 261 bits (141), Expect = 3e-68
Identities = 196/221 (89%), Gaps = 10/221 (5%)
Strand=Plus/Minus
Query 2768 ATCCCTTGTGATGCGCATGAGGATTGGGTACAAACTGAACGGAAAAGATGTATTAGAGGA 2827
||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 211 ATCCCATGTGATGCG-ATTAGGATTGGGTA-AAACTGAACGGAAAAGATGTATTAGAGGA 154
Query 2828 AGGACAAGTCAGCAACTTCCCTCGCGGGTTGTAAAACTGATCGATCAGCCATTGTATTTT 2887
|||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 153 AGGACAAGTCAGCAACTTCCCTCGCGGGTTGTG---C----CGATCAGCCATTGTCTTTT 101
Query 2888 CAGCAGAAGGACTTGAGTGTTTCTTTTCATCAACCCGACTaaaaaaaGAAAGACAAGTCT 2947
||||| |||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 100 CAGCACAAGGACTTGAGTGTTTATCATCATCAACCCGACTAAAAAG-GAAAGACAAGTCT 42
Query 2948 AGCCCAAGCCGTTGATGCAGCAAAAGCAGCTTTCTCCTTCC 2988
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Sbjct 41 TCCCCAATCCGTTGATGGAGCAAAACCGGCTTTCTCCTTCC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158326872108
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5