BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472661
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23980.1 | Symbols: | RING/U-box superfamily protein | chr1... 1544 0.0
> AT1G23980.1 | Symbols: | RING/U-box superfamily protein | chr1:8484703-8486002
REVERSE LENGTH=1300
Length=1300
Score = 1544 bits (836), Expect = 0.0
Identities = 1184/1335 (89%), Gaps = 92/1335 (7%)
Strand=Plus/Plus
Query 1 ATGTCAGAGAGGAAGATTCATAATTTCCAGCTCCAAAACGAGAATTTGAATCAACAAATC 60
||||| ||||||| ||||||| ||| ||||||| ||||||| || |||||| ||||||
Sbjct 15 ATGTCTGAGAGGAGGATTCATTATTCCCAGCTCAAAAACGACAACTTGAAT---CAAATC 71
Query 61 TCG-C--C-T-T-CTCCTTCTCCAATCACCGTGAATCATCAATCAAACGAttcttcttct 114
||| | | | | ||||||||||||||||| |||||||||||| || ||| | ||||||
Sbjct 72 TCGCCTTCTTCTGCTCCTTCTCCAATCACCCTGAATCATCAATTAACCGA--C-TCTTCT 128
Query 115 tcttcttcttcCTCCGGTGGTAATAATCGAATAAGCCCCATCGTTCTCTTCATTATCGTT 174
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 129 TCTTCTTCTTCCTCCGGTGGTAATAATCGAATAAGCCCCATCATTCTCTTCATCATCGTT 188
Query 175 CTCTTATCCGTAATCTTCTTCATCTGTAGCATTCTACATTTGTTGGTTAGATATTACTTA 234
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 189 CTCTTATCCGTAATCTTCTTCATCTGTAGCATTCTACATTTGTTGGTCAGATATTACTTA 248
Query 235 AAGAAGAAAAGATTGAGTCTTTCTTCATCACCGCACGAATCTGATCAAAACCCAGAATTT 294
||||||||||||| | ||||| |||||||| |||||||| |||||||||||||||||
Sbjct 249 AAGAAGAAAAGATCAAACCTTTCGTCATCACCAAACGAATCTAATCAAAACCCAGAATTT 308
Query 295 TCCGACTCCGATACTTACCAAAGACATCTTCAACAGCTTTTTCATCTCCACGATTCAGGT 354
|||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 309 TCCGACTCCGATACTTACCAAAGACAGCTTCAACAGCTCTTTCATCTCCATGATTCAGGT 368
Query 355 CTAGATCAAGCTTTAATCGATGCTCTCCCTGTGTTTCTTTACAAAGAGATCAAAGGTACG 414
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 369 CTAGATCAAGCTTTAATCGATGCTCTTCCTGTGTTTCTTTACAAAGAGATCAAAGGTACG 428
Query 415 AAAGAGCCTTTTGATTGTGCAGTGTGTCTTTGTGAATTCTCGGAAGATGATAAGCTTAGA 474
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 429 AAAGAGCCTTTTGATTGTGCAGTGTGTCTCTGTGAATTCTCGGAAGATGATAAGCTTAGA 488
Query 475 TTGCTTCCTAATTGTAGTCACGCTTTTCATATAGATTGTATCGATACTTGGCTTCTCTCG 534
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 489 TTGCTTCCGAATTGTAGTCACGCTTTTCACATAGATTGTATCGATACTTGGCTTCTCTCG 548
Query 535 AATTCGACTTGTCCACTTTGTAGAGGAACCCTTTTCTCTTTAGGTCATCAATTTGAATAC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 AATTCGACTTGTCCACTTTGTAGAGGAACCCTTTTCTCTTTAGGTCATCAATTTGAATAC 608
Query 595 CCGGATTTCAATTTCGGGTTTTTCGCCGGAGATGATGGAGGAG------TTAGGGTTTCT 648
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 609 CCTGATTTCAATTTCGGGTTTTTCGCCGGAGATGATGGAGGAGGAGGAGTTAGGGTTTCT 668
Query 649 CCGGTGCAGAAACCGGCTGATAATGAGATTGGGAAGAGAGTGTTTTCAGTGAGGCTTGGT 708
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 669 CCGGTTCAGAAACCAGCTGAGAATGAGATTGGGAAGAGAGTGTTTTCAGTGAGGCTTGGT 728
Query 709 AAGTTTAGGAGCAGCAATATTGTCAACAATGGTGAagtagtagtaggaggaggaggagag 768
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AAGTTTAGGAGCAGTAATATTGTCAACAATGGTGAAGTAGTAGTAGGAGGAGGAGGAGAG 788
Query 769 actagtagtgggtgtgtgagtagtagtagtCTTGATAACAGAAGATGTTTCTCAATGGGG 828
|| | ||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct 789 AC-A--AGT---------AGTAGTAGT---CTTGATAATAGAAGATGTTTCTCAATGGGG 833
Query 829 TCTTATCAGTACATAGTGGCTGAATCAGATCTGGTGGTGGCTTTGTGTCCTAATAATGAA 888
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 834 TCTTATCAGTACATAGTGGCTGAATCAGATCTGGTTGTTGCTTTGTGTCCTAATAATGAA 893
Query 889 GGATTGAAGAATGTGAAAGAAGGAGAGAGTAATAATAAGGATGTTGAAGGGAAGAAGATT 948
|||||||||||| || ||| ||||||||||||||||||||||
Sbjct 894 GGATTGAAGAAT---AA------------TAA------GGATGTTGAAGGGAAGAAGATT 932
Query 949 AACATGAGAAGTAAAGGTGAGAGCTTTTCTGTGTCAAAGATTTGGCAATGGTCTAATAAG 1008
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 AATATGAGAAGTAAAGGTGAGAGCTTTTCTGTGTCAAAGATTTGGCAATGGTCTAATAAG 992
Query 1009 AGATCAAAGTTTCCTAATAATC--C-ATCAGAGACCAATCTTGTGGTGGGTGGTTCTTCT 1065
|||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||
Sbjct 993 AGATCAAAGTTTCCTAATAATCATCCATCAGAGACTAATCTTGTGGTTGGTGGTTCTTCT 1052
Query 1066 TCTTCTT------ATGCTTGTTCTGGATCTG--GGAGT-A-CAGTTGC-TGCTGGGTTAG 1114
||||||| ||| |||||||||||||| || || | || ||| || || ||
Sbjct 1053 TCTTCTTCTTCTTATGTTTGTTCTGGATCTGATGG-GTTATCA-TTGAATGGAAGG--AG 1108
Query 1115 CATTGAATGGA--AGGAGATTTCA-GGGTCCATA-A--AGAGGGTAGCTTAA-TTCTGCC 1167
||| | || | ||||||| | |||| ||| | |||||||||||| | |||||||
Sbjct 1109 -ATTTCAGGGTCCATGAGATTTTAAGGGT--ATAGATCAGAGGGTAGCTTTAGTTCTGCC 1165
Query 1168 ATTGGTTTAATTCAATTATTGATTTTGAGT-TTT-GGTGAATTCATTTTGTTTAACACGA 1225
|||| ||||||| |||||||||||||| || ||| ||||||||||||||| |||||||||
Sbjct 1166 ATTGATTTAATTGAATTATTGATTTTGTGTGTTTTGGTGAATTCATTTTGCTTAACACGA 1225
Query 1226 TA---C---TGTAGTGTTCTTTTGTGTCCTCTGTAGCTGAATCTCTTTGT--GTTGAGGG 1277
|| | ||||||||| ||||||||||||||||||||||||||| ||| ||| | ||
Sbjct 1226 TATGACCACTGTAGTGTTGTTTTGTGTCCTCTGTAGCTGAATCTCTCTGTTTGTTTAAGG 1285
Query 1278 GAATAAGCTTTTGTT 1292
|||||||||||||||
Sbjct 1286 GAATAAGCTTTTGTT 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63553889970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5