BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472662

Length=597
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24020.1 | Symbols: MLP423 | MLP-like protein 423 | chr1:850...   894    0.0  


> AT1G24020.1 | Symbols: MLP423 | MLP-like protein 423 | chr1:8500451-8501520 
REVERSE LENGTH=732
Length=732

 Score =  894 bits (484),  Expect = 0.0
 Identities = 540/566 (95%), Gaps = 7/566 (1%)
 Strand=Plus/Plus

Query  1    TATACAAACAAATCATTCAAAGACATACAAATAATAATTGAGTCTTTTTGTAAACTAG-A  59
            |||||||||||||||||||||||||||| || ||||||||||| ||||| | || ||| |
Sbjct  1    TATACAAACAAATCATTCAAAGACATAC-AA-AATAATTGAGTTTTTTTTTTAATTAGAA  58

Query  60   A-AAATGGGATTGAGTGGTGTTCTTCATGTGGAGGTTGAGGTTAAGTCTCCGGCTGAAAA  118
            | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59   ACAAATGGGGTTGAGTGGTGTTCTTCATGTGGAGGTTGAGGTTAAGTCTCCGGCTGAAAA  118

Query  119  GTTCTGGGTAGCCCTCGGCGACGGCATCAACCTCTTCCCCAAAGCTTTCCCTAACGACTA  178
            ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct  119  GTTCTGGGTAGCCCTTGGCGACGGCATCAATCTCTTCCCCAAAGCTTTCCCTAACGACTA  178

Query  179  CAAAACCATCCAAGTTCTAGCCGGCGATGGAAACGCTCCTGGCTCCATTCGCCTCATTAC  238
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  179  CAAAACCATCCAAGTTCTAGCCGGCGATGGCAACGCTCCTGGCTCCATTCGCCTCATTAC  238

Query  239  TTATGGAGAAGGATCTCCACTGGTGAAGATATCGGCTGAGAGGATCGAAGCAGTGGATTT  298
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  239  TTATGGAGAAGGATCTCCACTGGTGAAGATATCGGCGGAGAGGATCGAAGCAGTGGATTT  298

Query  299  GGAGAACAAAAGCATGTCGTACAGCATCATTGGCGGAGAAATGTTGGAGTACTACAAAAA  358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  299  GGAGAACAAAAGCATGTCGTACAGCATCATTGGCGGAGAAATGTTGGAGTACTACAAAAC  358

Query  359  GTTCAAAGGAACCATCACCGTTATTCCTAAGGATGGTGGTAGCCTTCTGAAATGGTCCGG  418
             ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct  359  CTTCAAAGGAACCATCACCGTTATCCCTAAGGATGGTGGTAGCCTTCTGAAATGGTCTGG  418

Query  419  TGAGTTTGAGAAGACCGCCCATGAGATCGATGACCCACACGTCATCAAGGACTTTGCTGT  478
            ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct  419  TGAGTTTGAGAAGACCGCCCATGAGATCGATGATCCACATGTCATCAAGGACTTTGCTGT  478

Query  479  CAAGAACTTCAAAGAGATAGATGAGTATCTCCTTAAGCAATCTAGTGCCTAAAACTAGAA  538
            |||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct  479  CAAGAACTTCAAAGAGATAGATGAGTATCTTCTTAAGCAAACTAGTGCCTAACACTAGAA  538

Query  539  ATATCTTTAAATTATATAAGAGGGTT  564
                ||||||||||||||||||||||
Sbjct  539  C---CTTTAAATTATATAAGAGGGTT  561



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28733932084


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5