BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472663
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24030.1 | Symbols: | Protein kinase superfamily protein | ... 1674 0.0
AT1G24040.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 303 2e-81
> AT1G24030.1 | Symbols: | Protein kinase superfamily protein
| chr1:8503234-8505460 FORWARD LENGTH=1553
Length=1553
Score = 1674 bits (906), Expect = 0.0
Identities = 1032/1090 (95%), Gaps = 19/1090 (2%)
Strand=Plus/Plus
Query 481 AGA-GTTGTTGCAATCAAGAAGATGGATTTACCTACGTTTAAAAAGGCTGATGGAGAAAG 539
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 454 AGAGGTTGTTGCAATCAAGAAGATGGATTTACCTACGTTTAAAAAGGCTGACGGAGAAAG 513
Query 540 AGAATTTCGTGTGGAGGTGGATATCTTGAGCAGACTCGACCATCCAAATCTGGTATCATT 599
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 514 AGAATTTCGTGTGGAGGTGGATATCTTGAGCAGACTCGACCACCCAAATCTGGTCTCTTT 573
Query 600 GATTGGCTATTGTGCAGATGGAAAACACCGGTTCCTAGTATATGAATATATGCAAAATGG 659
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 574 GATCGGCTATTGTGCAGATGGGAAACACCGGTTCCTAGTATATGAATATATGCAAAATGG 633
Query 660 AAACCTGCAAGATCATTTGAATGGAATAAAAGAAGCAAAAATAAGCTGGCCAATAAGGCT 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 634 AAACCTGCAAGATCATTTGAATGGAATCAAAGAAGCAAAAATAAGCTGGCCAATAAGGCT 693
Query 720 CAGAATTGCACTTGGAGCAGCCAAAGGACTCGCGTATCTACATTCAAGTTCTTCTGTTGG 779
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 694 CAGAATTGCACTAGGAGCAGCAAAAGGACTCGCGTATCTCCATTCAAGTTCTTCTGTTGG 753
Query 780 GATTCCAATTGTTCATAGAGATTTCAAATCCACCAACGTTCTACTAGACTCCAACTATGA 839
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 754 GATTCCAATTGTTCACAGAGACTTCAAATCCACCAACGTTCTACTAGACTCCAATTATAA 813
Query 840 TGCAAAGATATCCGACTTTGGACTAGCAAAGTTGATGCCAGAAGGAAAGGATACTTGTGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TGCAAAGATATCCGACTTTGGACTAGCAAAGTTGATGCCAGAAGGAAAGGATACTTGTGT 873
Query 900 GACAGCAAGAGTTCTAGGAACATTTGGCTATTTCGACCCAGAATATACATCGACAGGTAA 959
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 874 CACAGCAAGAGTTCTAGGAACATTCGGCTATTTCGACCCAGAATATACATCGACAGGTAA 933
Query 960 ACTTACTCTACAAAGCGACATTTATGCATTTGGGGTTGTGCTTCTAGAACTACTTACTGG 1019
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 934 ACTTACTCTACAAAGCGACATTTATGCATTTGGGGTTGTGCTGCTAGAACTACTTACTGG 993
Query 1020 ACGCAGAGCAGTTGACTTAACTCAGGGCCCAAATGAACAGAACCTGGTGCTACAGGTTAG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 994 ACGCAGAGCAGTTGACTTAACTCAGGGCCCAAATGAACAGAACCTGGTGCTACAGGTTAG 1053
Query 1080 GAATATACTGAATGATAGAAAGAAATTGCGTAAGGTTATAGATGCCGAGCTGCCTCGGAA 1139
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1054 GAATATACTGAATGATAGAAAGAAATTGCGTAAGGTTATAGATGTCGAGCTGCCTCGGAA 1113
Query 1140 TTCATACAGCATGGAAGCTATAGCTATGTTTGCTGATCTAGCATCACGGTGCATCCGTAT 1199
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1114 TTCATACAGCATGGAAGCTATAACCATGTTTGCTGATCTAGCATCACGGTGCATCCGTAT 1173
Query 1200 AGAGAGTAAAGAGCGGCCTTCAGTGATGGATTGTGTTAAGGAACTGCAACTAATTATCTA 1259
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 AGAGAGTAAAGAGCGACCTTCAGTGATGGATTGTGTTAAGGAACTGCAACTAATTATCTA 1233
Query 1260 CACAAACTCGAAGGGTGGTTTGGGTGGGACGATTCCCACATTCAGAAGGCTCTAGACACT 1319
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1234 CACAAACTCGAAGGGTGGTTTGGGTGGGACGATTCCTACATTCAGAAGGCTCTAGACACT 1293
Query 1320 GAATTCTTTGAAACAAGTAATATGGATTATTGTCATTTTTCCTAAAATGAGAGGTCACTG 1379
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1294 GAATTCTTCGAAACAAGTAAAATGGATTACTGTCATTTTTCCTAAAATGAGAGGTCACTG 1353
Query 1380 ATTAAAAA-C--TTGATAAATATAAACAAACAATCCTAAATTCCTAATTAAGAATTACCG 1436
|| ||||| | |||||||||||||||||||||| |||| || | | |||||||||
Sbjct 1354 ATAAAAAAACACTTGATAAATATAAACAAACAATACTAA-TT---A-T---GAATTACCG 1405
Query 1437 GAAAATTT-ATATTCAACTTCCAGCCACTAAACTTTCATCAAGCGATATTATTTGGATGT 1495
|| ||||| | |||||||||||||| | ||||||| ||||||||||||||||||||| |
Sbjct 1406 GATAATTTCA-ATTCAACTTCCAGCTAGGAAACTTTGATCAAGCGATATTATTTGGATAT 1464
Query 1496 ATATACTATAAAGTCAATAAGAAAATCGGATCAAGCAATAGATGTATTTGTATAGTATGT 1555
||||||||||| ||| |||||||||| | | ||| ||||||||| |||||||||||
Sbjct 1465 ATATACTATAATTTCACTAAGAAAATC--A--A-GCACTAGATGTATCCGTATAGTATGT 1519
Query 1556 TGTATTTGCT 1565
||||||||||
Sbjct 1520 TGTATTTGCT 1529
Score = 316 bits (171), Expect = 3e-85
Identities = 200/214 (93%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 235 CCATATGGCATAAAAGGGTCTACAGAACAGCAGAGTGCTGGCAAATCGAAGATCAAGCGT 294
||| |||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 255 CCAGATGGCATAAAAGGGTCTACAGAACAGCAGAATGCTGGCAAATCGAAGATCAGGCTT 314
Query 295 CTCAGCCAAGGAAGCGAAGATTCGGGTCATCAGTTTATACCCTCAAGGAGATGGAGGAGG 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 CTCAGCCAAGGAAGCGAAGATTCGGGTCATCAGTTTATACCCTCAAGGAGATGGAGGAGG 374
Query 355 CCACAAGTTCTTTCAGCGATGAGA-TCTCCTCGGCAAAGGAGGCTTTGGTCGAGTATACA 413
|||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||| |||
Sbjct 375 CCACAAGTTCTTTCAGTGATGAGAATCTCCTCGGTAAAGGAGGCTTTGGCCGAGTTTACC 434
Query 414 AAGGCACTCTAAAAACAGGAGAGGCT-TTGTAAT 446
|||||||| ||||||||||||||| | ||| |||
Sbjct 435 AAGGCACTTTAAAAACAGGAGAGGTTGTTGCAAT 468
Score = 296 bits (160), Expect = 4e-79
Identities = 215/239 (90%), Gaps = 13/239 (5%)
Strand=Plus/Plus
Query 1 AACAATCTTCTGTTTCTTTGGAAGCAACTAACTTACAAAGGATATATTCACGACTACAAA 60
|||||||||||||||||||||||||||||||| ||||||| | || |||||||||| |||
Sbjct 1 AACAATCTTCTGTTTCTTTGGAAGCAACTAAC-TACAAAGAACATCTTCACGACTAGAAA 59
Query 61 GACACA-CCCTCTTCTGTCTTAAGGACGAGACAGAGAAGCTTCTTCTATTGGCTTTGGAA 119
|||||| || ||||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 60 GACACATACC-CTTCTGTCTTAAGGACGAGAC-CAGAAGCTTCTTCTATCGGCTTTGTAA 117
Query 120 TGGTCTCTGGCATCTACGAAGCATAAGAAAAAACCAAATCCAAACTAAAGCTATGCATTT 179
||| ||| | | | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 118 TGG--TCT---A-C-A--AAGGATAAGAAAAAACCAAATCCAAACTAAAGCTATGCATTT 168
Query 180 TCCTCTTGTTTCGGCTTGGAACAAGAGAAGGAGAAGCAAATCTTATGATACGGATCCAT 238
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 169 TCCACTTGTTTCGGCTTGGAACAAGAGAAGGAGAAGCAAATCATATGATACGGATCCAT 227
> AT1G24040.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr1:8503777-8506795 REVERSE LENGTH=1398
Length=1398
Score = 303 bits (164), Expect = 2e-81
Identities = 176/182 (97%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 484 GTTGTTGCAATCAAGAAGATGGATTTACCTACGTTTAAAAAGGCTGATGGAGAAAGAGAA 543
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1267 GTTGTTGCAATCAAGAAGATGGATTTACCTACGTTTAAAAAGGCTGACGGAGAAAGAGAA 1208
Query 544 TTTCGTGTGGAGGTGGATATCTTGAGCAGACTCGACCATCCAAATCTGGTATCATTGATT 603
|||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1207 TTTCGTGTGGAGGTGGATATCTTGAGCAGACTCGACCACCCAAATCTGGTCTCTTTGATC 1148
Query 604 GGCTATTGTGCAGATGGAAAACACCGGTTCCTAGTATATGAATATATGCAAAATGGAAAC 663
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GGCTATTGTGCAGATGGGAAACACCGGTTCCTAGTATATGAATATATGCAAAATGGAAAC 1088
Query 664 CT 665
||
Sbjct 1087 CT 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77258638755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5