BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472672
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24120.1 | Symbols: ARL1 | ARG1-like 1 | chr1:8529143-853221... 2525 0.0
> AT1G24120.1 | Symbols: ARL1 | ARG1-like 1 | chr1:8529143-8532212
REVERSE LENGTH=1717
Length=1717
Score = 2525 bits (1367), Expect = 0.0
Identities = 1535/1613 (95%), Gaps = 23/1613 (1%)
Strand=Plus/Plus
Query 52 GAACCGTCACGTAGCTCTCTTCCGCCGTCAATTTGAGTTTTCCGGGGAGAGAATTGTAGA 111
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 109 GAACCGTCTCGTAGCTCTCTTCCGCCGTCAATTTGAGGTTTCCGGGGAGAGAATTGTAGA 168
Query 112 AATGAAGGAATAA-T--CG-AG---------ACCTCGCTGGAGATTCTATTTTGTTGAAG 158
||||||||||||| | | || |||||||||||||||||||||||||||||
Sbjct 169 AATGAAGGAATAATTGGAGAAGATTATTATCACCTCGCTGGAGATTCTATTTTGTTGAAG 228
Query 159 TGTGGATTGATTCTTA-GGGTTTT-GTGTGTGAAGAGAAAATGCCAGGTCATAGATCCAA 216
||| |||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 229 TGT-GATTGATTATTAGGGGTTTTGGT-TGTGAAGAGAAAATGCCAGGTCATAGATCCAA 286
Query 217 GTCGGAGAAGAAGGATGCTGATAAGCAGCTCCGTCGGGATCCTTATGAGGTTTTAGGAGT 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GTCGGAGAAGAAGGATGCTGATAAGCAGCTCCGTCGGGATCCTTATGAGGTTTTAGGAGT 346
Query 277 TTTAAGAAACTCTACGGATCAGGAAATTAAGAGCGCTTATCGGAAATTAGCTCTCAAGTA 336
||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 347 CTTAAGGAACTCTACCGATCAGGAAATTAAGAGCGCTTACCGGAAATTGGCTCTCAAGTA 406
Query 337 CCATCCTGATAAGACTGCAAATGATCCGGTTGCGGCTGACATGTTTAAGGAGGTTACGTT 396
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 407 CCATCCGGATAAGACTGCAAATGATCCGGTTGCAGCTGACATGTTTAAGGAGGTCACGTT 466
Query 397 TTCCTACAACATCTTATCTGATCCGGAGAAACGTCGCCAGTATGATTCAGCAGGTTTTGA 456
||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 467 TTCTTACAACATCTTATCTGATCCGGAGAAACGTCGCCAGTTTGATTCAGCTGGTTTTGA 526
Query 457 GGCTGTTGAAGCAGAAAGCCAAGAGCTGGAGCTAGATCTCTCAAGTTTGGGAGCTGTGAA 516
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 527 GGCTGTTGAAGCAGAAAGCCAAGAGCTGGAGCTAGATCTCTCAAGTTTAGGAGCTGTGAA 586
Query 517 TACTGTGTTTGCAGCTTTGTTTAGCAAACTTGGTGTCCCAATAAAAACATCTGTATCTGC 576
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 587 TACTGTGTTTGCAGCTTTGTTTAGCAAACTTGGTGTGCCGATAAAAACATCTGTATCTGC 646
Query 577 AACTATTTTGGAGGAGGCTCTTAATGGCAGAGTTTCAGTTGATCCTCTTGTACTTGGACA 636
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AACTATATTGGAGGAGGCTCTTAATGGCAGAGTTTCAGTTGATCCTCTTGTACTTGGACA 706
Query 637 AGCTGTGTCTAAAAAGGTTGAAAAGCAATGTGCACACTTTTATGCTGTCACAATATCAGA 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AGCTGTGTCTAAAAAGGTTGAAAAGCAATGTGCACACTTTTATGCTGTCACAATATCAGA 766
Query 697 AGAGGAAGTAAGTTCTGGGTTGGTCTGCAGAGTAGAATCATCTAGCAAAAGCAAATTCAA 756
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 AGAGGAAGTAAGTGCTGGGTTGGTCTGCAGAGTAGAATCATCTAGCAAAAGCAAATTCAA 826
Query 757 GTTACTGTATTTTGATCAAGAGGCCAACAGTGGATTAAGCCTAGCCCTGCAGGAGGACAG 816
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 827 GCTACTGTATTTTGATCAAGAGGCCAACAGCGGATTAAGCCTAGCCCTGCAGGAGGACAG 886
Query 817 CAAAAGAACCGGTAAGATAACATCTGCCGGAATGTACTTTCTCGGTTTCCCTGTCTACCG 876
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CAAAAGAACGGGTAAGATAACATCTGCCGGAATGTACTTTCTCGGTTTCCCTGTCTACCG 946
Query 877 GTTGGATCACACAGTTAATTCAATGGCTCAAGCAAAGGATCCAGAAACTGCCTTCTTTAA 936
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 947 GTTGGATCACACAATTAATTCAATGGCTCAAGCAAAAGATCCAGAAACTGCCTTCTTTAA 1006
Query 937 AAAGCTTGATGGATTTCAGCAATGTGAAGTTACCGAGCTAAAGGCTGGCACTCATGTCTT 996
|||||||||||| |||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 1007 AAAGCTTGATGGTTTTCAGCAATGTGAGGTAACCGAGCTAAAGGCCGGCACGCATGTCTT 1066
Query 997 TGCTGTCTATGGTGATAACTTTTTTAAAAGCGTGAGCTACACAATCCAAGTCCTTTGTGC 1056
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1067 TGCTGTCTATGGTGATAACTTTTTTAAAAATGTGAGCTACACAATCCAAGTCCTGTGTGC 1126
Query 1057 TGCTGCTTTTACGCAAGAAAAAGAAGAACTTAGGTCTGTAGAAGCTCAGATCCTCACAAA 1116
||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 1127 TGCCGCTTTTACGCAAGAAAAAGAAGACCTCAGGTCTGTAGAAGCTCAGATACTCACTAA 1186
Query 1117 AAGAGCAGAGCTGGCAAAGTTTGAGACAGAGTACAGGGAAGTACTTGTGCAGTTCACCGA 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 AAGAGCAGAGCTGGCAAAGTTTGAGACAGAGTACAGGGAAGTACTTGTGCAGTTCACCGA 1246
Query 1177 TATGACCAGTCGATACGCTCAGGAAATGCAATCGATCGATGAGCTTTTAAAGCAGAGAAA 1236
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1247 TATGACCAGTCGATACGCTCAAGAAATGCAATCGATCGATGAGCTCTTAAAGCAGAGAAA 1306
Query 1237 TGAAATTCACTCAGCATACACAACAATTCCATTGATGAAGCGGAGCTCGAGCAAGAACAG 1296
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1307 TGAAATTCACTCAGCATACACGACGATTCCATTGATGAAGCGGAGCTCGAGCAAGAACAG 1366
Query 1297 GCTGAGAAAGAGCTCATTCAAGAAGGCAGCGGCTAAGGCGCCTGCTCCAACTGAACaaga 1356
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1367 GATGAGAAAGAGCTCATTCAAGAAGGCGGCGGCTAAGGCGCCTGCTCCAACTGAACAGGA 1426
Query 1357 agaagatgaagatgaagaggaagaggaagaagaagaaagcagcagacagaagaacaagaa 1416
|||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1427 AGAAGAGGAAGAGGAAGAGGAAGAAGAAGAGGAAGAAAGCAGCAGACAGAAGAACAAGAA 1486
Query 1417 ACCAAGTACTTGTGATAGGTCCGAGACACTAAAGAAGAAGAGCAAATGGTTCAATTTACA 1476
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 ACCAAGTACTTGTGATAAGTCCGAGACACTAAAGAAGAAGAGCAAATGGTTCAATTTACA 1546
Query 1477 TTTGAAATTGGACAAGAAAAAACCTTGTTAGTT-CTTTTATCTCTTTTATaaaa-aaaTC 1534
||||||||||||||||||||||||||||||||| ||| ||| ||||||| ||| |||
Sbjct 1547 TTTGAAATTGGACAAGAAAAAACCTTGTTAGTTTCTTC-ATCACTTTTATCAAAGAAA-- 1603
Query 1535 AA-ATTCTTATCCATTATTTTTCTCCCTTACCGTAGGGATCGGTGTATCTGTAAATCTTT 1593
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1604 AAGATTCTTATCCATTATTTTTCTCCCTTACCTTAGGGATCGGTGTATCTGTAAATCTTT 1663
Query 1594 TGCTATTTTTCTCCTTCAACTTATTATTAGTATTAGTCAACAATTTTATTTTG 1646
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1664 TGCTATTTTTCTCCTTCAACTTATCATTAGTATTAGTCAACAATTTTATTTTG 1716
Score = 86.1 bits (46), Expect = 1e-15
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1 CTCTCACCTTCCTCCTCCGATTTCTCCTTTGACAGTTCAGTCTTATCTCTCG 52
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 28 CTCTCACCTTCCTCCGACGATTTCTCCTTTGACAGTTCAGTCTTATCTCTCG 79
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81324882900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5