BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472677
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2819 0.0
AT1G70100.3 | Symbols: | unknown protein; BEST Arabidopsis tha... 257 2e-67
> AT1G24160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G70100.3);
Has 5230 Blast hits to 4162 proteins in 477 species: Archae
- 30; Bacteria - 540; Metazoa - 2022; Fungi - 429; Plants
- 280; Viruses - 32; Other Eukaryotes - 1897 (source: NCBI BLink).
| chr1:8553420-8556290 REVERSE LENGTH=2037
Length=2037
Score = 2819 bits (1526), Expect = 0.0
Identities = 1835/1979 (93%), Gaps = 42/1979 (2%)
Strand=Plus/Plus
Query 43 AGCTTGAAAAAGGTGGATCATCATTGGGAATTTAACAACAATTTT-GTGTTGTGGGTTAT 101
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 75 AGCTTGAAAAAGGTGGATCATCATTGGGAATTTAACAACAATTTTGGT-TTGTGGGTTAT 133
Query 102 CTTCACTTTTCTGGTTCTTGTACTGAACATTAATGGGGGATATGCAAGTTGGTGTTGCCA 161
||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||
Sbjct 134 CTTCACTTTTCTGGTTCTTGTGCTGAGCATTAATGGGTGATATGCAAGTTGGTGTTGCCA 193
Query 162 CTATTGACGATAAGGGATTTTATGGCTTGATGGAGGATA-ATCCGGTAAACGCGGTGGCT 220
|||||||||||||||| |||||||| ||||||||||||| | | ||||| |||||||||
Sbjct 194 CTATTGACGATAAGGGTTTTTATGGTTTGATGGAGGATACA-CAAGTAAAGGCGGTGGCT 252
Query 221 TCATCGAACCCGAGCCTGCAAGTGTCGGTTTCATTTGGTAGGTTTGAGAATGATTCACTT 280
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 253 TCATCGAACCCGAGCTTGCAAGTGTCGGTTTCTTTTGGTAGGTTTGAGAATGATTCACTT 312
Query 281 TCATGGGAGAAGTTCTCAGCTTTCTCTCCAAACAAGTACTTGGAGGAAGTTGGAAAGTGT 340
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 313 TCATGGGAGAAGTTCTCAGCTTTCTCTCCAAATAAGTACTTGGAGGAAGTTGGCAAGTGT 372
Query 341 GCTACTCCAGGATCAGTTGCTCAAAAGAAGGCTTATTTTGAAGCTCATTATAAGAAGATT 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GCTACTCCAGGATCAGTTGCTCAAAAGAAGGCTTATTTTGAAGCTCATTATAAGAAGATT 432
Query 401 GCTGAGAGGAAAGCTGAGATCATAGATCAGGAGAAACTAATGGATAAAAATGCATCTTTT 460
|||||||||||||||||||| ||||||||||||||||||||||| | || |||||||||
Sbjct 433 GCTGAGAGGAAAGCTGAGATTATAGATCAGGAGAAACTAATGGACGAGAACGCATCTTTT 492
Query 461 AGATCTATTGTTTCAGATCAAGG-GAGTGTGGAACGCGAAAATGGTGAGTTGGTGGTAGA 519
||||||||||||||||||| ||| |||||||||| |||||||||| | | ||||||||||
Sbjct 493 AGATCTATTGTTTCAGATC-AGGAGAGTGTGGAATGCGAAAATGGCGGGGTGGTGGTAGA 551
Query 520 TTCTGAGGTTGATGATGGATCAAATGGGAAATTTA-CTTGTGATGAAGATAAGCAGGTGA 578
|||||||||||| |||| | |||||| || ||| ||||||||||||||||||| ||||
Sbjct 552 GTCTGAGGTTGATAATGGTTGTAATGGGCAA-TTATCTTGTGATGAAGATAAGCATGTGA 610
Query 579 CTGACATTGCTGCTGAAGTGAATGAACTGAGTTTTGATGAGAGTAATGAAGAAACAATCG 638
|||||||| ||||| |||||||| || ||||| |||||||||||||||||||||| || |
Sbjct 611 CTGACATTACTGCTAAAGTGAATCAAGTGAGTATTGATGAGAGTAATGAAGAAACTATTG 670
Query 639 TTGTCAAGGAATGTCAAAGCTCGGTTGATCA-AGTGAAAGAAGAAGTCAAGGACAATGTG 697
||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||
Sbjct 671 TTGTCAAGGAATGTCAAAGCTCGGTTGAT-ACGGTGAAAGACGAAGTCAAGGACAGTGTG 729
Query 698 GATAGTCCAGTGTTGGAGAAATCAGAAGAGATTGCTCTTGTGGATA-AGAA-ATCAGAAG 755
||||||||||| ||||||||| |||| ||||||||||||| ||| | |||| || ||||
Sbjct 730 GATAGTCCAGTATTGGAGAAAGCAGAGGAGATTGCTCTTGAGGA-AGAGAAGAT-AGAAA 787
Query 756 TGGTCGTCCATACACAGGAGAAACCAAAAGAGGTTTTACAAGTGGATgagaaagaagaga 815
||||||||||| ||||||| | || ||||||||||||||| |||||||||||||||||
Sbjct 788 TGGTCGTCCATGTGCAGGAGAGATCAGAAGAGGTTTTACAAGAGGATGAGAAAGAAGAGA 847
Query 816 cagaagtaagagaagaagtgagagaCAACATTTCATTACAAAATGATACTGGGGATACAA 875
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 848 CAGAAGTAAGAGAAGAAGTGAGAGACGACATTTCATTACAAAATGATACTGTGGATGCAA 907
Query 876 ATGAAACG-CCAATGAAGGTGGTGAAGAAAGAGAAAAAGCCTAATATAATCAAGATTAAT 934
|||||||| | || ||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 908 ATGAAACGACGAA-GAAGGTGGTGAAGAAAGAGAAAAAGCCTAATCTAATCAAGAAGAAT 966
Query 935 GATGGAAATGTGCGGATTAATCCTACGAGAGGCTCTCCTAAGCCTAATCAGGT-GACGAA 993
||||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct 967 GATGGAAATGTGCGGATTAATCCTACGAGAGGCTCTCTTAAGCCTAATCAGGTGGGGGGA 1026
Query 994 GAAACCGGAAACTAACAAGATTGT----A--AGGAAAACTCCACCGAGCAAGGAGATCAG 1047
||||||||||||||||| | ||| | |||||||||||||||||||||||||| |
Sbjct 1027 -AAACCGGAAACTAACAAAACTGTAACGAGTAGGAAAACTCCACCGAGCAAGGAGATGAA 1085
Query 1048 AAACATGATGAAGGCAACAAAGAAACCAGCTA-CACCAATCTCAAAAGCCCCACAAGGGT 1106
|||||||||||| ||||||||||||||||| | ||||||| |||||| ||||||||||||
Sbjct 1086 AAACATGATGAAAGCAACAAAGAAACCAGC-AGCACCAATGTCAAAATCCCCACAAGGGT 1144
Query 1107 TTTCAGCTCCAAGAGTGTACAAGCCAGCTCC-ACAAAAAACTTCATTGTCTACATCTCAC 1165
|| || ||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1145 TTGCAACTCCAAGAGTGTACAAGCCAGCTCCAAC-AAAAACTTCATTGTCTACATCTCAC 1203
Query 1166 TCTTCGATGAAGAAGGAAAAGGTCTCGCCTTTACTGAGTAAAAAACAAACCGCTCCAAAG 1225
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TCTTCGTTGAAGAAGGAAAAGGTCTCGCCTTTACTGAGTAAAAAACAAACCGCTCCAAAG 1263
Query 1226 TCATTGCATATCTCTATGAATCTGGATCCACCTGCTTCCGATCCTACTGCTCTTACAAGC 1285
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1264 TCATTGCATATCTCTATGAATCTGGATCCACCTGCTTCCGATCCTACTGCTCTTCCAAGC 1323
Query 1286 ACTAGAAAATCATTGATTATGGAGCGAATGGGAGATAAAGACATTGTCAAACGTGCATTT 1345
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 ACTAGAAAATCATTGATCATGGAGCGAATGGGAGATAAAGACATTGTCAAACGTGCATTC 1383
Query 1346 AAATCATTTCAAAAGAGTTTCGACTTCAAGTCTTCTGACGATGGGATAAACACAGCAGTA 1405
||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct 1384 AAATCATTTCAAAAGAGTTTCGACTTCAAGTCTTCTGTCGACGGGCTAAACACAGCAGTA 1443
Query 1406 AAGCAGAATCCTGCAAAGCCAACTAGTATTCCATCAGTAGCTACTCGGCAGAAGGAAAAT 1465
||||||||||||||||||||||| | |||||| |||||||||||||| ||||||||||||
Sbjct 1444 AAGCAGAATCCTGCAAAGCCAACAATTATTCCGTCAGTAGCTACTCGTCAGAAGGAAAAT 1503
Query 1466 GGCAGGCCTACAAAAGCAAGTAGCATGGAGAAGAGAAGTGGTACTACCGCCTATCGTTCT 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 GGCAGGCCTACAAAAGCAAGTAGCATGGAGAAGAGAAGTGGTACTACCGCCTATCGTTCT 1563
Query 1526 CCATCTCATGGACTCAAAAGCAATGAGACCACTGAGAAACAA-AAGAAGGAGCTTTCCAA 1584
|||||||||||||||||||||||||| ||| ||||||||||| || |||||| |||||||
Sbjct 1564 CCATCTCATGGACTCAAAAGCAATGAAACCGCTGAGAAACAACAA-AAGGAGATTTCCAA 1622
Query 1585 GTCTGGTGCAAGACCTGTAGAGAAGACAGGCTTGCAGAAGAACCCAAAGGCAGGCGGAGT 1644
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1623 GTCTGGTGCAAGACCTTTAGAGAAGACACGCTTGCAGAAGAACCCAAAGGCAGG---AGT 1679
Query 1645 GATTGATGCCAAAACCCGGAGGGACTCTCTTAATCCGAAAGCAAAACCTGTGCAGGGTTC 1704
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GATTGATGCCAAAACGCGGAGGGACTCTCTTAATCCGAAAGCAAAACCTGTGCAGGGTTC 1739
Query 1705 TCTTCCAATGCGGACCTTACCGAAAAGCACTTTAGACAAGGTGTTATGATAGTTATATCG 1764
|||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||
Sbjct 1740 TCTTCCAATGCGGACCGTATCGAAAAGCTCTTTAGACAAAGTGTTATGATAGTTATATCC 1799
Query 1765 ATCCGGTTTTTATTCTGATATTCTGGCAAAGATCGCCACCAATGTTGTTTCATCAGTCTT 1824
||||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1800 ATCCGGTATTAAT-CTGATCTTCTGGCAAAGATCGCCACCAATGTTGTTCCATCAGTCTT 1858
Query 1825 GAGGTAAAGAGCCAATGATCTTGT-T----GTT---ATATAGAAAAGTCTCTAGTTGCCA 1876
| |||| ||||||||||||||||| | ||| |||||||||||||||||||| |||
Sbjct 1859 GGGGTATAGAGCCAATGATCTTGTATTCTTGTTGTTATATAGAAAAGTCTCTAGTTACCA 1918
Query 1877 GTATTTAGTTGTGGAAGGAGTAATAAGAGTAAGAAGAGATAGTTATATTTTACAGTTTCC 1936
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1919 GTATTTAGTCGTGGAAGGAGTAATAAGAGTAATAAGAGATAGTTATATTTTACAGTTTCC 1978
Query 1937 TATGTATGTGTATAGAACCCAATGATTATGTTGTTCTGATAATAGAAGTGGATTGATTC 1995
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1979 TATGTATGTGTATAGAACCCAATGATAATGTTGTTCTGATAATAGAAGTGGATTGATTC 2037
> AT1G70100.3 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G24160.2);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr1:26403083-26406098 FORWARD LENGTH=2039
Length=2039
Score = 257 bits (139), Expect = 2e-67
Identities = 213/248 (86%), Gaps = 7/248 (3%)
Strand=Plus/Plus
Query 217 GGCTTCATCGAACCCGAG-CCTGCAAGTGTCGGTTTCATTTGGTAGGTTTGAGAATGATT 275
|||||||||||| | || ||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 312 GGCTTCATCGAA-TCAAGAACTGCAAGTGTCTGTTTCGTTTGGTAAGTTTGAGAATGATT 370
Query 276 CACTTTCATGGGAGAAGTTCTCAGCTTTCTCTCCAAACAAGTACTTGGAGGAAGTTGGA- 334
||||||||||||||||||| ||| |||| |||||||||||||| ||||| ||||| |||
Sbjct 371 CACTTTCATGGGAGAAGTTTTCATCTTTTTCTCCAAACAAGTATTTGGAAGAAGT-GGAG 429
Query 335 AAGTGTGCTACTCCAGGATCAGTTGCTCAAAAGAAGGCTTATTTTGAAGCTCATTATAAG 394
|||||||| ||| | |||||||| ||||| |||||||||||||| ||| | ||||| |||
Sbjct 430 AAGTGTGCAACTGCTGGATCAGTAGCTCAGAAGAAGGCTTATTTCGAATCACATTACAAG 489
Query 395 AAGATTGCTGAGAGGAAAGCTGAGATCAT-A-G-ATCAGGAGAAACTAATGGATAAAAAT 451
|||||||||||||||| |||||| ||||| | | | ||||||||||| |||| | |||
Sbjct 490 AAGATTGCTGAGAGGAGAGCTGATATCATCATGGAGCAGGAGAAACTTTTGGAGAGGAAT 549
Query 452 GCATCTTT 459
||||||||
Sbjct 550 GCATCTTT 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844873105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5