BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472682
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27240.1 | Symbols: | Paired amphipathic helix (PAH2) super... 715 0.0
AT1G24250.1 | Symbols: | Paired amphipathic helix (PAH2) super... 76.8 2e-13
> AT1G27240.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9466237-9467076 FORWARD LENGTH=561
Length=561
Score = 715 bits (387), Expect = 0.0
Identities = 524/586 (89%), Gaps = 26/586 (4%)
Strand=Plus/Plus
Query 1 ATGGTTGAAAGAAGAGTTCAAGTGGAGCCAAGTCTTAGTGATGCGCATTCATATATCACT 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGTTGAAAGAAGAGTTCAAGTGGAGCCAACTCTTAGTGATGCGCATTCATATATCACT 60
Query 61 GCTGTGAAGGAAGCCTTTCATGATGAACCTACAAAATATGAAGAGTTTATTAAACTCATG 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTGTGAAGGAAGCATTTCATGATGAACCTACAAAATATGAAGAGTTTATTAAACTCATG 120
Query 121 ATTGATATTCGTGATCATACTGTTGATAAAGCTACTGGCCTTTCAAA-TATGACTGAACT 179
| |||||||||||||||| ||| ||||| |||| |||| || |||| | ||||||||||
Sbjct 121 AATGATATTCGTGATCATGGTGTCGATAAGGCTAGTGGCATTGCAAAGT-TGACTGAACT 179
Query 180 CATTAAAGGGCACCCGAGGCTGCTTCGTGGTTTAAGTTTCTTCTTTCCACAGGTTAAGAG 239
||||||||| |||||||||||||||||||||||||||||||||||| | || || |
Sbjct 180 CATTAAAGGACACCCGAGGCTGCTTCGTGGTTTAAGTTTCTTCTTT-C-CA----CAG-G 232
Query 240 ATCCATCTCTCCCAAGGCTAACAATACCATCCATCATGAGGCTAATAGAACCATCATTCT 299
| | || | | | | |||||||||||||||||| ||||||||||||||
Sbjct 233 -------T-T---AA--C--A-GAGA-CATCCATCATGAGGCTAAGAGAACCATCATTCT 275
Query 300 CAAGGCTGAGGCAACCAACCCTCCCGAGGCTGAGCATCGTGGTGCTAAGTCTAAATATAC 359
||||| | ||||||||| |||||||||||||| |||| ||||||||||||| |||||
Sbjct 276 CAAGGATAAGGCAACCATCCCTCCCGAGGCTGCTTATCGGGGTGCTAAGTCTACTTATAC 335
Query 360 CATAAGAAAACGTATTGAGCATGATTGGGAAAATTTTATGAACATGCTTAAGACAAGGTT 419
|| || ||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 336 CAAAATAAAACAAATTGAGCCTGACTGGGAGAATTTTATGAACATGCTTAAGACAAGGTT 395
Query 420 TCGGAGCCTTGATACTCATGTAGTTGAGTCATTTCTCAAGATAATGATAATGCATAACGA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 396 TCGGAGCCTTGATACTCATGTAGTTGAGTCATTTCTCAAGATAATGATAATGTATGATGA 455
Query 480 AGGaaaaaaaTCGGAAAAGGAGGTGCAAGAGGAGGTCGTTGATCTTCTCTATTATCATGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 AGGAAAAAAATCGGAAAAGGAGGTGCAAGAGGAGGTCGTTGATCTTCTCTATTATCATGA 515
Query 540 AGATTTGATCGACAAGTTTTTCAGATACTTTAACATGAGAAAATAA 585
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 516 AGATTTGATCGACAAGTTTTTCAGATTGTTTAACATGAGAAAATAA 561
> AT1G24250.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8588442-8589546 REVERSE LENGTH=759
Length=759
Score = 76.8 bits (41), Expect = 2e-13
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand=Plus/Plus
Query 36 TAG-TGATGCGCA-TTCATATATCACTGCTGTGAAGGAAGCCTTTCATGATGAACCTACA 93
||| ||||||| | |||||| | | ||||||||||||||||||||||||||||||| ||
Sbjct 353 TAGATGATGCG-ACTTCATACCTTATTGCTGTGAAGGAAGCCTTTCATGATGAACCTGCA 411
Query 94 AAATATG 100
|||||||
Sbjct 412 AAATATG 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5