BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472682 Length=585 Score E Sequences producing significant alignments: (Bits) Value AT1G27240.1 | Symbols: | Paired amphipathic helix (PAH2) super... 715 0.0 AT1G24250.1 | Symbols: | Paired amphipathic helix (PAH2) super... 76.8 2e-13 > AT1G27240.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:9466237-9467076 FORWARD LENGTH=561 Length=561 Score = 715 bits (387), Expect = 0.0 Identities = 524/586 (89%), Gaps = 26/586 (4%) Strand=Plus/Plus Query 1 ATGGTTGAAAGAAGAGTTCAAGTGGAGCCAAGTCTTAGTGATGCGCATTCATATATCACT 60 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1 ATGGTTGAAAGAAGAGTTCAAGTGGAGCCAACTCTTAGTGATGCGCATTCATATATCACT 60 Query 61 GCTGTGAAGGAAGCCTTTCATGATGAACCTACAAAATATGAAGAGTTTATTAAACTCATG 120 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCTGTGAAGGAAGCATTTCATGATGAACCTACAAAATATGAAGAGTTTATTAAACTCATG 120 Query 121 ATTGATATTCGTGATCATACTGTTGATAAAGCTACTGGCCTTTCAAA-TATGACTGAACT 179 | |||||||||||||||| ||| ||||| |||| |||| || |||| | |||||||||| Sbjct 121 AATGATATTCGTGATCATGGTGTCGATAAGGCTAGTGGCATTGCAAAGT-TGACTGAACT 179 Query 180 CATTAAAGGGCACCCGAGGCTGCTTCGTGGTTTAAGTTTCTTCTTTCCACAGGTTAAGAG 239 ||||||||| |||||||||||||||||||||||||||||||||||| | || || | Sbjct 180 CATTAAAGGACACCCGAGGCTGCTTCGTGGTTTAAGTTTCTTCTTT-C-CA----CAG-G 232 Query 240 ATCCATCTCTCCCAAGGCTAACAATACCATCCATCATGAGGCTAATAGAACCATCATTCT 299 | | || | | | | |||||||||||||||||| |||||||||||||| Sbjct 233 -------T-T---AA--C--A-GAGA-CATCCATCATGAGGCTAAGAGAACCATCATTCT 275 Query 300 CAAGGCTGAGGCAACCAACCCTCCCGAGGCTGAGCATCGTGGTGCTAAGTCTAAATATAC 359 ||||| | ||||||||| |||||||||||||| |||| ||||||||||||| ||||| Sbjct 276 CAAGGATAAGGCAACCATCCCTCCCGAGGCTGCTTATCGGGGTGCTAAGTCTACTTATAC 335 Query 360 CATAAGAAAACGTATTGAGCATGATTGGGAAAATTTTATGAACATGCTTAAGACAAGGTT 419 || || ||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||| Sbjct 336 CAAAATAAAACAAATTGAGCCTGACTGGGAGAATTTTATGAACATGCTTAAGACAAGGTT 395 Query 420 TCGGAGCCTTGATACTCATGTAGTTGAGTCATTTCTCAAGATAATGATAATGCATAACGA 479 |||||||||||||||||||||||||||||||||||||||||||||||||||| || | || Sbjct 396 TCGGAGCCTTGATACTCATGTAGTTGAGTCATTTCTCAAGATAATGATAATGTATGATGA 455 Query 480 AGGaaaaaaaTCGGAAAAGGAGGTGCAAGAGGAGGTCGTTGATCTTCTCTATTATCATGA 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 456 AGGAAAAAAATCGGAAAAGGAGGTGCAAGAGGAGGTCGTTGATCTTCTCTATTATCATGA 515 Query 540 AGATTTGATCGACAAGTTTTTCAGATACTTTAACATGAGAAAATAA 585 |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 516 AGATTTGATCGACAAGTTTTTCAGATTGTTTAACATGAGAAAATAA 561 > AT1G24250.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:8588442-8589546 REVERSE LENGTH=759 Length=759 Score = 76.8 bits (41), Expect = 2e-13 Identities = 59/67 (88%), Gaps = 3/67 (4%) Strand=Plus/Plus Query 36 TAG-TGATGCGCA-TTCATATATCACTGCTGTGAAGGAAGCCTTTCATGATGAACCTACA 93 ||| ||||||| | |||||| | | ||||||||||||||||||||||||||||||| || Sbjct 353 TAGATGATGCG-ACTTCATACCTTATTGCTGTGAAGGAAGCCTTTCATGATGAACCTGCA 411 Query 94 AAATATG 100 ||||||| Sbjct 412 AAATATG 418 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28131122320 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5