BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472688
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2305 0.0
> AT1G27150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:9429047-9432274 FORWARD LENGTH=1743
Length=1743
Score = 2305 bits (1248), Expect = 0.0
Identities = 1384/1451 (95%), Gaps = 3/1451 (0%)
Strand=Plus/Plus
Query 49 CCTGTAGGAAGCGGCTAACTTTCAGCTCTGTTTTCTTGAAAATGGAGAAAACACTGAGAT 108
||||||||||||||| ||||| |||||||||| ||||| |||||||||||||| ||||||
Sbjct 91 CCTGTAGGAAGCGGCAAACTTGCAGCTCTGTTCTCTTG-AAATGGAGAAAACAGTGAGAT 149
Query 109 GTGTTCGGTGGGGTTATGAGGTTAATACCTCTTCTGATGATTGCATCGACGCAATTAACT 168
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 150 GTGTTCGGTGGGGTTATGAGGTTAATACCTCTTCTGATGCTTGCATCGACGCAATTAACT 209
Query 169 CTTATTTTCAACAGGTTCTTAGTTATGGGAGGAAGAGGAAAGTGATTCTAGAAGCACCAC 228
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 CCTATTTTCAACAGGTTCTTAGTTATGGGAGGAAGAGGAAAGTGATTCTAGAAGCACCAC 269
Query 229 TCTACGATAATGATTGTGTTTTGGGCAACATTTTAGCTGCTCATTACCTTTCTTCATCTG 288
|||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 270 TCTACGATAAAGATTGTGTTTTGGGCAGCATTTTAGCTGCTCATTTCCTTTCTTCATCTG 329
Query 289 ATCCTTCCAGAGCTAATTCCTACGTTGAAGCTGCGGCCTCTAATCTCGAACAATCTACAC 348
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 330 ATCCTTCTAGAGCTAATTCCTATGTTGAAGCTGCGGCATCTAATCTCGAACAATCTACAC 389
Query 349 CTTATGAGAAAGCGGTTTACGAGGCTGTTACTTACCTGATCTCCGAGGACAGGGATGACG 408
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 390 CTTATGAGAAAGCGGTTTACGAGGCTGTTACTTACCTAATCTCTGAGGATAGGGATGACG 449
Query 409 ACTTGGCTTTTGAAATGCACACCAAGCTACTTAATAGATTCCCAAAGGACCTT-GCCTCT 467
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| || |||
Sbjct 450 ACTTGGCTTTTGAAATGCACACCAAGCTACTTAAAAGATTCCCAAAGGA-CTTGGCTTCT 508
Query 468 TTGAAGAGAGCACAGCTTTTATGTTTCTACATGGGTCAACCTGAGCCCTTTTTGGGTCTT 527
||||| ||||| ||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 509 TTGAAAAGAGCGCAGCTTTTAAGTTTCTACATGGGTCAACCTGATCCCTTCTTGGGTCTT 568
Query 528 GTTCAGCAGGTTCTACCTGCGAATCAAGAAGAAAGTTATATTCATGGTATACTTGCGTTC 587
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 569 GTTCAGCAGGTTCTACCTGCGAATCAAGAAGAAAGTTATATTCATGGTTTACTTGCGTTC 628
Query 588 CCATTGTTAGAACTTGGTCGAATGGAAGAAGCTGCGGCAGCTTCCAAAAAAGGCTATGAG 647
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 629 CCATTGTTAGAACTTGGTCGAATGGAAGAAGCTGCGGCAGCTTCCAGAAAAGGCTATGAG 688
Query 648 ATAAACAAAGAAGACTCCTGGGCACATCACTGTTTGTGTCATGTTCTTCAACATGAATGT 707
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 ATAAACAAAGAAGACGCTTGGGCACATCACTGTTTGTGTCATGTTCTTCAACATGAATGT 748
Query 708 CGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCGCTCGCAGGATCTTGGCCTTCTTGCTCA 767
|||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 749 CGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCACTCGCAGGAACTTGGCCCTCTTGCTCA 808
Query 768 TCCTTCATGTATACACACAACTGGTGGCATGTTGCTCTTTGTTACTTAGAAGGAGGGTCA 827
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 809 TCCTTCATGTATACACACAATTGGTGGCATGTTGCTCTCTGTTACTTAGAAGGAGGGTCC 868
Query 828 CCAATGAGTAAAGTAGAGGAGATTTATGATCATCACATCTGGAAAGAATTGGAGAAAGAC 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 CCAATGAGTAAAGTAGAGGAGATTTATGATCATCACATCTGGAAAGAATTGGAGAAAGAC 928
Query 888 GACGCTGTTCCTCCTGAAGTTTATCTCAATGCGCTGGGATTGTTGCTACGTTTAGATGTA 947
|| ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||
Sbjct 929 GATGCTGTTCCTCCTGAAGTTTATCTCAATGCATTGGGCTTGTTGATACGTTTAGATGTA 988
Query 948 AGAGATGCTCTTGATGGTTTTGAAGACCGTCTCAAAAACCTTGCAGTTCGTTTAACTAAT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 AGAGATGCTCTTGATGGTTTTGAAGACCGTCTCAAAAACCTTGCAGTTCGTTTAACTAAT 1048
Query 1008 CAGGCAAACTGGTATTTGGAGTGGCACCTTGATATATTGATAGTTTGGGCATTAGCAAAG 1067
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1049 CAGGCAAACTGGTATTTGGAGTGGCACCTTGATATATTGATAGTTTGGGCACTAGCAAAG 1108
Query 1068 GTTGGAGAGACTTCAAGAGCTCATGAATTACTTGAGGGTCTTAAGTCCCGATTATCAAGG 1127
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 1109 GTTGGAGAGACTTCAAGAGCTCATGAATTACTTGAGGGCCTTAAGTTCCGATTATCAAAG 1168
Query 1128 ATGAATaaaaaaaaaCAACAAGTGATGCAGAAAGGGATTCAGCTCGGGGAAGCTGTGTTT 1187
| ||| || || || ||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1169 AAGAACAAGAAGAAGCAACAAGTGATGCAGAAAGGGATTCAGCTTGGGGAAGCTGTGTAT 1228
Query 1188 GAATTCGCAAGGGGTAACTACGAAAAGGCTTTAGAACTATTCGGTTCAGAGTTCAACGCC 1247
|||| ||||||||||||||||||||||||| |||||||| | ||||||||||||||||||
Sbjct 1229 GAATACGCAAGGGGTAACTACGAAAAGGCTCTAGAACTACTGGGTTCAGAGTTCAACGCC 1288
Query 1248 ATTGGTTACAAGATCGTCGGGGCATCAGATGAACAGATAGATGTTTTCAACGAAATGTGG 1307
||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1289 ATTGGTTACAAGATCGTTGGGGCATCAGACGAACAAATAGATGTTTTCAACGAAATGTGG 1348
Query 1308 TGCCAGCTGCTGCTAAAGACAGGCCAATCCTCCACTGCCAAAGAAGTGATCAGAGAGAGG 1367
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1349 TGCCAGCTGCTGCTAAAGACAGGCCAATCCTCCACGGCCAAAGAAGTAATCAGAGAGAGG 1408
Query 1368 ATAAAGATCAGAGATGGTGTTCCTTTCATGTGGCGTTTGCTGGAGAAGAGTTACTCCATG 1427
|| ||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1409 ATTAAGGCCAGAGATGGTATTCCTTTCATGTGGCGTTTGCTGGAGAAAAGTTACTCCATG 1468
Query 1428 GAAGGCAATGCAGAGGCTGAGAGTAGTGCAGGAGAGAGAGCTAAGAAACTAGAATCTTGT 1487
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1469 GAAGGCAATGCAGAGGCTGAGAGTAGTGCACGAGAGAGAGCTAAGAAACTTGAATCTTGT 1528
Query 1488 TATTTCTAACT 1498
|||||||||||
Sbjct 1529 TATTTCTAACT 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73895202240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5