BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472689
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27135.1 | Symbols: | Maternally expressed gene (MEG) famil... 346 6e-95
> AT1G27135.1 | Symbols: | Maternally expressed gene (MEG) family
protein | chr1:9427164-9427529 FORWARD LENGTH=267
Length=267
Score = 346 bits (187), Expect = 6e-95
Identities = 229/250 (92%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 15 AGCTCTAATTTGCATAGTTATATTTTCCTTCTTCGCTATGCATGAGTGTGAGAGATTGGA 74
|||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 18 AGCTCTGATTTGCATAGTTATAGCTTCCCTCTTCGCTATGCATGAGTGTGAGAGATTGGA 77
Query 75 GGCTATAGAGAAAGAGAATTCGAGAAAGATCTATGTACCACCATGTTACAAAACCATTTG 134
||||| |||| ||||||| ||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 78 GGCTACAGAGGAAGAGAAATCGAGCAAGATCTATGTCCCACCATGTTACGAAACCATTTG 137
Query 135 CTCGTTCACGCTTAAAAAGGATTGTTGGTGCTGCTTCGAACCTGTAGTTCACAAAGATCT 194
||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 138 CTCGTTCTCACTTAAAAAGGATTGTTGGTGCTGCTTCGAACCTTTAGTTCACAAAAATCT 197
Query 195 TTGTTGGGGAGTAAAAGACTATCCGAACGCCAAAGAGCTTTGCTTCGATGAATGTTCAAA 254
||||||||||||| | || | ||||||||||||||||||||||||| | |||| ||||||
Sbjct 198 TTGTTGGGGAGTACATGATTTTCCGAACGCCAAAGAGCTTTGCTTCAACGAATATTCAAA 257
Query 255 GAAGATTTAA 264
||||||||||
Sbjct 258 GAAGATTTAA 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12064259760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5