BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472690
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27130.1 | Symbols: ATGSTU13, GST12, GSTU13 | glutathione S-... 1362 0.0
AT1G27140.1 | Symbols: ATGSTU14, GST13, GSTU14 | glutathione S-... 808 0.0
> AT1G27130.1 | Symbols: ATGSTU13, GST12, GSTU13 | glutathione
S-transferase tau 13 | chr1:9425460-9426886 FORWARD LENGTH=1095
Length=1095
Score = 1362 bits (737), Expect = 0.0
Identities = 885/953 (93%), Gaps = 23/953 (2%)
Strand=Plus/Plus
Query 52 ATCAGATCAATAAAAAACCAGAAGAAAACATGGCTCAGAACGAGACAGTTAAGCTGATAG 111
||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 95 ATCAGATCAAT-AAAAACCAGAAGAAGTCATGGCTCAGAACGATACAGTGAAGCTGATAG 153
Query 112 GTTCTTGGTCTAGCCCTTATTCCCTTAGGGCACGAGTGGCTCTACACTTGAAATCTGTCA 171
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 154 GTTCTTGGTCTAGCCCTTATTCCCTTAGGGCACGTGTGGCTCTACACTTGAAATCTGTCA 213
Query 172 AGTATGAGTACTTAGACGAACCTGATGTTCTTAAGGAAAAGAGCGAACTCCTTCTCAAAT 231
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 214 AGTACGAGTACTTAGACGAACCTGATGTTCTTAAAGAAAAGAGTGAACTCCTTCTCAAAT 273
Query 232 CTAACCCCATCCACAAGAAAGTCCCTGTCCTCCTCCATGGTGATCTCTCGATCTGTGAGT 291
||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 274 CTAACCCCATCCACAAGAAAGTCCCTGTCCTCCTCCATGGTGACCTCTCCATCTCTGAGT 333
Query 292 CCCTCAACGTCGTTCAATACGTCGACGAGGCTTGGCCCTCCGTTCCTTTAATCCTTCCTT 351
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 334 CCCTCAACGTTGTTCAATACGTCGACGAGGCTTGGCCCTCCGTTCCTTCAATCCTTCCTT 393
Query 352 CTGATGCCTATGATCGCGCATCTGCTCGGTTCTGGGCTCAGTACATCGATGACAAGTGTT 411
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 394 CTGATGCCTATGATCGCGCATCTGCTCGGTTTTGGGCTCAGTACATCGATGACAAGTGTT 453
Query 412 TTGCGGCGGTGGATGCGGTGGTCGGAGCAAAAGACGACGAAGGGAAAATGGCGGCGGCGG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 454 TTGCGGCGGTGGATGCGGTGGTCGGAGCAAAAGACGACGAAGGGAAAATGGCGGCGGTGG 513
Query 472 GAAAGCTGATGGAGTGTTTGGCGATACTAGAAGAAACGTTTCAGAAGAGCAGCAAAGGAT 531
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 514 GAAAGCTGATGGAGTGTTTGGCGATACTTGAAGAAACGTTTCAGAAGAGCAGCAAAGGAT 573
Query 532 TAGGGTTCTTCGGAGGAGAGACCATCGGCTACCTTGACATTGCATGTTCGGCTCTTTTAG 591
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 574 TAGGGTTCTTTGGAGGAGAGACCATCGGCTACCTTGACATTGCTTGTTCGGCTCTTTTAG 633
Query 592 GTCCGATCTCTGTGATCGAGGCGTTTTCCGGCGTCAAGTTTCTTCGGCAAGAGACAACAC 651
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 634 GTCCGATCTCTGTGATCGAGGCGTTTTCCGGCGTCAAGTTTCTCCGGCAAGAGACAACAC 693
Query 652 CTGGGTTGATCCAATGGGCCGAGAGGTTTAGGGCCCATGAAGCTGTTAAGCCGTACATGC 711
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 694 CTGGGTTGATCAAATGGGCCGAGAGGTTTAGGGCCCATGAAGCTGTTAAGCCCTACATGC 753
Query 712 CAACCGTCGAAGAGGTCGTTGCATTCGCAAAGCAAAAGTTCAATGTTCAGTGATGTGTTT 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 754 CAACCGTCGAAGAGGTCGTTGCATTCGCAAAGCAAAAGTTCAATGTTCAGTGATGCGTTT 813
Query 772 GCTT-CTAAAGCAAAAGCAAAAGCAGTGT-GATTTAA-ACCaaaaaaaaTGATGTTTGTT 828
|| || ||||||||||||| ||| | || || || || |||| |||||||||||
Sbjct 814 T-TTGCTTTT--AAAAGCAAAAGCAATGTTG-TTGAATACGAATAAAA-TGATGTTTGTT 868
Query 829 GTCTTTGAGAAAATTTAAAGTTGTGTGTGTTTTGTGGCAAAACTTATG-TGTCAT-GCGA 886
|||||||||||| |||||| |||| ||||||||||| |||||||| || | | || | |
Sbjct 869 GTCTTTGAGAAACTTTAAATTTGTCTGTGTTTTGTGCCAAAACTTCTGAT-TAATTG-GT 926
Query 887 TTATTG-TCTTTGTGCGTTAATATGATATTATCAATTTTAATCTTATTAATTGTTATAG- 944
|| ||| ||||||||||||| ||| ||| |||||||| |||||||| ||| ||||
Sbjct 927 TT-TTGGTCTTTGTGCGTTACTAT--TAT---CAATTTTATTCTTATTATTTGCCATAGC 980
Query 945 TTATGATTTAAATA-ATCATAGAAGAAACAGAGAGGCTTTAGGTCCTTGTGCT 996
|||||||| |||| ||||||||||||||| ||||||||||||| ||||||||
Sbjct 981 TTATGATT-AAATTGATCATAGAAGAAACATAGAGGCTTTAGGTTCTTGTGCT 1032
Score = 60.2 bits (32), Expect = 4e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1 AACACGACTCCTAATTCCACTTTCCTCCATCACTC 35
|||||||||||||||||||||||||||| ||||||
Sbjct 1 AACACGACTCCTAATTCCACTTTCCTCCCTCACTC 35
> AT1G27140.1 | Symbols: ATGSTU14, GST13, GSTU14 | glutathione
S-transferase tau 14 | chr1:9427858-9428716 FORWARD LENGTH=732
Length=732
Score = 808 bits (437), Expect = 0.0
Identities = 597/674 (89%), Gaps = 11/674 (2%)
Strand=Plus/Plus
Query 81 ATGGCTCAGAACGAGACAGTTAAGCTGATAGGTTCTT-GGTCTAG-CCCTTATTCCCTTA 138
|||||||||||||| ||||| ||||||||||||| || || | | ||||| |||| |||
Sbjct 1 ATGGCTCAGAACGATACAGTGAAGCTGATAGGTTGTTCGG-AT-GACCCTTTTTCCATTA 58
Query 139 GGGCACGAGTGGCTCTACACTTGAAATCTGTCAAGTATGAGTACTTAGACGAACCTGATG 198
|| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||
Sbjct 59 GGCCACGAGTGGCTCTACACTTGAAATCTATCAAGTACGAGTACTTAGAAGAACCTGATG 118
Query 199 -T--TCTTAAGGAAAAGAGCGAACTCCTTCTCAAATCTAACCCCATCCACAAGAAAGTCC 255
| |||| |||||||||| |||||||||||||||||||||| |||||||||||| ||
Sbjct 119 ATGATCTTGGGGAAAAGAGCCAACTCCTTCTCAAATCTAACCCTATCCACAAGAAAACCC 178
Query 256 CTGTCCTCCTCCATGGTGATCTCT-CGATCTGTGAGTCCCTCAACGTCGTTCAATACGTC 314
|||||||| | |||||||| || | | |||||||||||||||||| ||||||||||| ||
Sbjct 179 CTGTCCTCATTCATGGTGACCT-TGCAATCTGTGAGTCCCTCAACATCGTTCAATACCTC 237
Query 315 GACGAGGCTTGGCCCTCCGTTCCTTTAATCCTTCCTTCTGATGCCTATGATCGCGCATCT 374
|||||||||||||| || | ||| | |||||||||||| ||||||||||||| || |||
Sbjct 238 GACGAGGCTTGGCCTTCTGATCCATCCATCCTTCCTTCTAATGCCTATGATCGTGCGTCT 297
Query 375 GCTCGGTTCTGGGCTCAGTACATCGATGACAAGTGTTTTGCGGCGGTGGATGCGGTGGTC 434
|||||||||||||||||||||||||| |||||||| || | ||||| | ||||| || |
Sbjct 298 GCTCGGTTCTGGGCTCAGTACATCGACGACAAGTGCTTCGAGGCGGCGAATGCGCTGACC 357
Query 435 GGAGCAAA-AGACGACGAAGGGAAAATGGCGGCGGCGGGAAAGCTGATGGAGTGTTTGGC 493
|||||||| | ||||||||| || ||| |||||| |||||||||||| ||||||||||||
Sbjct 358 GGAGCAAACA-ACGACGAAGAGAGAATAGCGGCGACGGGAAAGCTGACGGAGTGTTTGGC 416
Query 494 GATACTAGAAGAAACGTTTCAGAAGAGCAGCAAAGGATTAGGGTTCTTCGGAGGAGAGAC 553
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 417 GATACTAGAAGAGACGTTTCAGAAGAGCAGCAAAGGGTTAGGGTTTTTCGGAGGAGAAAC 476
Query 554 CATCGGCTACCTTGACATTGCATGTTCGGCTCTTTTAGGTCCGATCTCTGTGATCGAGGC 613
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 477 CATCGGCTACCTTGACATTGCATGTGCGGCTCTTTTGGGTCCGATCTCTGTGATCGAGAT 536
Query 614 GTTTTCCGGCGTCAAGTTTCTTCGGCAAGAGACAACACCTGGGTTGATCCAATGGGCCGA 673
|||||||| || ||||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 537 GTTTTCCGCCGACAAGTTTGTCCGGGAAGAGACAACACCTGGGTTGATCCAATGGGCCGT 596
Query 674 GAGGTTTAGGGCCCATGAAGCTGTTAAGCCGTACATGCCAACCGTCGAAGAGGTCGTTGC 733
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 597 GAGGTTTAGGGCCCATGAAGCTGTTAGGCCTTACATGCCAACCGTCGAAGAGGTCACTGA 656
Query 734 ATTCGCAAAGCAAA 747
||| | ||||||||
Sbjct 657 ATTAGTAAAGCAAA 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5