BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472691
Length=2309
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27120.1 | Symbols: | Galactosyltransferase family protein ... 3618 0.0
AT4G21060.1 | Symbols: | Galactosyltransferase family protein ... 78.7 2e-13
> AT1G27120.1 | Symbols: | Galactosyltransferase family protein
| chr1:9421177-9424069 FORWARD LENGTH=2393
Length=2393
Score = 3618 bits (1959), Expect = 0.0
Identities = 2207/2321 (95%), Gaps = 39/2321 (2%)
Strand=Plus/Plus
Query 8 TTCTTCTTAGTAAAACTTTGCATTAATGGCTTACCCAAATTTGTAAGCTCTTTGTTTCCT 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 TTCTTCTTAGTAAAACTTTGCATTAATGGCTTACCCAAATTTGTAAGCTCTTTGTTTCCT 150
Query 68 CCcttcttcgtcttcttcttcttcttcACTCTCCAAA-TTGTTTTCTAGGGTTTGATT-A 125
|||||| | |||| ||| ||||||||| |||||||| ||| |||||| ||||| || |
Sbjct 151 CCCTTC-T--TCTTATTC-TCTTCTTCATTCTCCAAATTTG-TTTCTA-GGTTT-CTTCA 203
Query 126 --TCGAGCAATGAAGAAGTCTAAACTCGAGAATTCGTCTTCACAGATTCGATTTGGG-TT 182
| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||
Sbjct 204 GTTTGAGCAATGAAGAAGTCTAAACTCGATAATTCTTCTTCACAGATTCGATTCGGGCTT 263
Query 183 AGTTCAGTTCTTATTAGCTGTTCTGCTTTTTTACTTCCTCTGCATGAGCTTTGAGATCCC 242
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 264 -GTTCAGTTCTTATTAGTTGTTCTGCTTTTTTACTTCCTCTGCATGAGCTTCGAGATCCC 322
Query 243 ATTCATTTTCAGAACCGGGTCTGGGTCCGGGTCTGATGATGGGTCGTCTTCTTCTTTCGC 302
|||||| |||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 323 ATTCATCTTCAGAACCGGGTCTGGGTCCGGGTCTGATGATGTTTCATCTTCTTCTTTTGC 382
Query 303 TGACGCATTACCGAGACAAATGGTTGTTGGTGGTAGTAGTAGGGAAGCTAATT-GG--GT 359
||||||||||||||||| |||||||||||||||| |||||||||||||||||| || ||
Sbjct 383 TGACGCATTACCGAGACCAATGGTTGTTGGTGGTGGTAGTAGGGAAGCTAATTGGGTTGT 442
Query 360 CGTTG--G-AGAAGAAGCAGACCCACATCGACATTTCAAGGATCCGGGTCGGGTCCAGCT 416
|| | | ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 443 CGGAGAAGAAGAAGAAGCAGACCCACATCGACATTTCAAGGATCCGGGTCGGGTACAGCT 502
Query 417 TCGGTTACCGGAGCGGAAAATGCGAGAATTTAAGTCCGTCTCTGAGATTTTCGTCAATGA 476
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 503 TCGGTTACCGGAGCGGAAAATGAGGGAATTTAAGTCCGTCTCTGAGATTTTCGTCAACGA 562
Query 477 GAGCTTTTTCGACAATGGCGGATTCAGCGATGAATTCTCAATCTTTCACAAAACAGCGAA 536
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 GAGCTTCTTCGACAATGGCGGATTCAGCGATGAATTCTCAATCTTTCACAAAACAGCGAA 622
Query 537 GCATGCGATTTCAATGGGGAGGAAAATGTGGGACGGACTCGATTCGGGTTTAATCAAACC 596
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 623 GCATGCGATTTCAATGGGTCGAAAAATGTGGGACGGACTCGATTCGGGTTTAATCAAACC 682
Query 597 CGATAAAGCTCCGGTTAAGACCCGAATTGAGAAATGTCCGGATATGGTTTCGGTTTCTGA 656
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 683 CGATAAAGCTCCGGTTAAGACCCGGATTGAGAAATGTCCGGATATGGTTTCGGTTTCTGA 742
Query 657 GTCGGAGTTTGTGAACCGGAGCCGGATCTTGGTTTTGCCATGTGGGTTAACGTTAGGATC 716
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 743 GTCGGAGTTTGTGAACCGGAGTCGGATCTTGGTTTTGCCGTGTGGGTTAACGTTAGGATC 802
Query 717 TCACATTACCGTTGTGGCTACGCCGCATTGGGCCCACGTTGAGAAGGATGGAAGAGATAA 776
|||||||||||| |||||||||||||||||||| ||||||||||| ||| | | |||||
Sbjct 803 TCACATTACCGTCGTGGCTACGCCGCATTGGGCTCACGTTGAGAAAGAT-G--GTGATAA 859
Query 777 GACGGCGATGGTGAGTCAGTTCATGATGGAGTTACAGGGATTGAAGGCGGTGGATGGTGA 836
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 860 GACGGCGATGGTGAGTCAGTTCATGATGGAGTTACAAGGATTAAAGGCGGTGGATGGTGA 919
Query 837 AGATCCGCCTCGGATACTCCATTTTAACCCGAGGATTAAAGGTGATTGGAGTGGAAGACC 896
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 920 AGATCCGCCTCGGATACTTCATTTTAACCCGAGGATTAAAGGTGATTGGAGTGGAAGACC 979
Query 897 AGTGATTGAGCAAAACACTTGTTATCGAATGCAATGGGGCTCAGGTTTACGTTGTGATGG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 AGTGATTGAGCAAAACACTTGTTATCGAATGCAATGGGGCTCAGGTTTACGTTGTGATGG 1039
Query 957 TCGTGAATCTAGTGATGAAGAAGAATTTGTTGATGGAGAGGTGAAATGTGAGAGGTGGAA 1016
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1040 TCGTGAATCTAGTGATGATGAAGAATATGTTGATGGAGAGGTGAAATGTGAGAGGTGGAA 1099
Query 1017 GAGAGATGATGATAG-TGGTGGTAATAATGGTGATGGTTTTGATGAATCAAAGAAGACAT 1075
||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1100 GAGAGATGATGAT-GATGGTGGTAATAATGGTGATGATTTTGATGAATCAAAGAAGACAT 1158
Query 1076 GGTGGTTGAATAGGTTGATGGGTCGGAGGAAGAAGATGATAACGCATGATTGGCCTTATC 1135
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1159 GGTGGTTGAATAGGTTGATGGGTCGGAGGAAGAAGATGATAACACATGATTGGGATTATC 1218
Query 1136 CTTTTGCTGAAGGGAAGCTTTTTGTTCTTACGCTTCGAGCTGGGATGGAAGGTTATCACA 1195
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1219 CTTTTGCTGAAGGGAAGCTTTTTGTTCTTACACTTCGAGCTGGGATGGAAGGTTATCATA 1278
Query 1196 TTAGTGTTAATGGAAGACATATCACATCTTTTCCTTATAGAACGGGGTTTGTTTTGGAGG 1255
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 TTAGTGTGAATGGAAGACATATCACATCTTTTCCTTATAGAACGGGGTTTGTTTTGGAGG 1338
Query 1256 ATGCCACTGGATTAGCAGTCAAAGGAAACATTGATGTGCATTCTGTTTATGCTGCCTCGC 1315
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1339 ATGCCACTGGATTAGCAGTCAAAGGAAACATTGATGTGCATTCTGTATATGCTGCCTCGT 1398
Query 1316 TACCTTCTACAAATCCTAGTTTTGCACCGCAGAAGCATCTCGAGATGCAAAGCATATGGA 1375
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1399 TACCTTCTACAAATCCTAGTTTTGCACCGCAGAAGCATCTCGAGATGCAAAGGATATGGA 1458
Query 1376 AAGCTCCTTCGTTGCCTCAGAAGCCTGTAGAGTTGTTCATTGGAATTCTCTCTGCTGGTA 1435
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1459 AAGCTCCTTCGTTACCTCAGAAGCCTGTAGAGTTGTTCATTGGAATTCTTTCTGCTGGTA 1518
Query 1436 ACCATTTTGCAGAGAGAATGGCAGTGAGGAAGTCATGGATGCAGCAAAAGCTAGTCAGAT 1495
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1519 ATCATTTTGCAGAGAGAATGGCAGTGAGGAAGTCATGGATGCAGCAGAAGCTGGTCAGAT 1578
Query 1496 CATCAAAAGTTGTTGCCCGGTTCTTTGTGGCATTGCATGCAAGAAAGGAAGTCAATGTGG 1555
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 CATCGAAAGTTGTTGCCCGGTTCTTTGTGGCATTGCATGCAAGAAAGGAAGTCAATGTGG 1638
Query 1556 ATTTAAAGAAAGAAGCTGAGTACTTTGGTGATATTGTCATAGTACCGTACATGGATCATT 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 ATTTAAAGAAAGAAGCTGAGTACTTTGGTGATATTGTCATAGTACCGTACATGGATCATT 1698
Query 1616 ATGACCTTGTTGTGCTCAAGACGGTTGCCATCTGCGAATATGGGGTTAACACAGTGGCGG 1675
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1699 ATGACCTTGTTGTGCTCAAGACAGTTGCCATCTGCGAATATGGGGTGAACACAGTGGCGG 1758
Query 1676 CAAAGTATGTTATGAAATGTGACGATGATACATTTGTGCGAGTGGATGCCGTGATCCAGG 1735
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1759 CAAAGTACGTTATGAAATGTGACGATGATACATTTGTGCGTGTGGATGCTGTGATCCAGG 1818
Query 1736 AAGCAGAAAAGGTTAAGGGAAGAGAGAGCCTTTATATTGGAAACATTAATTTCAACCATA 1795
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1819 AAGCAGAAAAGGTTAAGGGAAGAGAGAGCCTTTATATTGGAAACATTAATTTTAACCATA 1878
Query 1796 AGCCATTGCGTACCGGGAAATGGGCTGTGACATACGAGGAATGGCCAGAAGAGTATTATC 1855
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1879 AGCCATTGCGTACCGGGAAATGGGCTGTGACATTCGAGGAATGGCCAGAAGAGTATTATC 1938
Query 1856 CTCCATATGCAAATGGTCCGGGTTACATCTTGTCATATGATATAGCTAAGTTCATCGTCG 1915
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1939 CTCCATATGCAAATGGTCCGGGTTACATCTTGTCATATGATGTAGCTAAGTTCATTGTCG 1998
Query 1916 ATGATTTTGAACAAAAGAGATTAAGATTATTCAAGATGGAAGATGTGAGCATGGGAATGT 1975
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 ATGATTTTGAACAAAAGCGATTAAGATTATTCAAGATGGAAGATGTGAGCATGGGAATGT 2058
Query 1976 GGGTGGAGAAGTTCAACGAGACTAGACCAGTGGCAGTGGTTCATAGCCTCAAGTTCTGCC 2035
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2059 GGGTGGAGAAGTTCAACGAGACTAGACCAGTGGCAGTGGTTCACAGCCTCAAGTTCTGTC 2118
Query 2036 AGTTCGGCTGCATAGAAGACTACTTCACCGCTCATTATCAGTCGCCTCGCCAGATGATTT 2095
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2119 AGTTTGGTTGCATAGAAGACTACTTCACCGCTCATTATCAGTCGCCTCGCCAGATGATTT 2178
Query 2096 GCATGTGGGATAAGCTGCAGAGACTCGGGAAGCCCCACTGCTGCAACATGAGATGACATA 2155
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2179 GCATGTGGGATAAGCTGCAGAGACTCGGGAAGCCCCAATGCTGCAACATGAGATGACATA 2238
Query 2156 ACATTGGTTTTTGCAGGATTCTGGAATTTTTCGTTAGAAAGGAAAATGAAGAAGCAGATG 2215
|||||| |||||| | | ||| ||||||||||||||||||||||||||||||||||
Sbjct 2239 ACATTGTTTTTTG-A-----C-GGA-TTTTTCGTTAGAAAGGAAAATGAAGAAGCAGATG 2290
Query 2216 GGAGATTATGGAGCTAACCGTCTTAGATCTCTGTATA-----GAAACAatatataatgta 2270
|| ||| ||||||||||| || ||||||||||||||| ||||||||||||||||||
Sbjct 2291 GGTGATAATGGAGCTAACTGTTTTAGATCTCTGTATATTATAGAAACAATATATAATGTA 2350
Query 2271 tctatatatatatatata-a-tataATGAAGGGCTCTTGAG 2309
|||||||||||||||||| | |||||||||||| |||||||
Sbjct 2351 TCTATATATATATATATATAATATAATGAAGGGTTCTTGAG 2391
> AT4G21060.1 | Symbols: | Galactosyltransferase family protein
| chr4:11240730-11244860 FORWARD LENGTH=2226
Length=2226
Score = 78.7 bits (42), Expect = 2e-13
Identities = 49/52 (94%), Gaps = 2/52 (4%)
Strand=Plus/Plus
Query 1943 TATTCAAGATGGAAGATGTGAGCATGGGAATGTGGGTGGAG-AAGTTCAACG 1993
||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 2018 TATTCAAGATGGAAGATGTGAGCATGGGATTGTGGGTGGAGCAA-TTCAACG 2068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114607844235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5