BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472692
Length=1918
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27100.1 | Symbols: | Actin cross-linking protein | chr1:94... 2615 0.0
> AT1G27100.1 | Symbols: | Actin cross-linking protein | chr1:9407125-9411172
REVERSE LENGTH=2090
Length=2090
Score = 2615 bits (1416), Expect = 0.0
Identities = 1653/1765 (94%), Gaps = 25/1765 (1%)
Strand=Plus/Plus
Query 1 ATAACCAAAAACAAACCTCATCTTTCTCCTTCATTTCACAAACTTATAATTCTCTGTTTT 60
||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATAACCAAACACAAACATCATCTTTCTCCTTCATTTCACAAACTTAAAATTCTCTGTTTT 60
Query 61 TGTTTCTTCTTCTTCTTTCAAAATCTCAAG--aaa-aaaaaaTGGAGTTATTCACCAAAG 117
|| | |||||||||||||||||||||||| ||| ||||||||||| ||||||| ||||
Sbjct 61 TG--T-TTCTTCTTCTTTCAAAATCTCAAGCAAAAGAAAAAATGGAGCTATTCACAAAAG 117
Query 118 GTAACAACGTCAAGTTACGTAGCCATCTAGATAAGTTTTTAGTCGCCGACGATGACCAAG 177
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 118 GTAACAACGTTAAGTTACGTAGCCACCTAGATAAGTTTTTAGTCGCCGACGATGACCAAG 177
Query 178 AAACCATCCGTCAAAGCCGTAAAGGAGATGCCCGGCGTGCCGTTTGGACGGTGGAGCCCG 237
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 178 AAACCATCCGTCAAAGCCGTAAAGGAGATGCACGGCGTGCCGTTTGGACGGTGGAGCCCG 237
Query 238 TCGTTGATAAACCTAATCTGATAAGGTTAAGGAGCAGCCACGGGACGTACTTAACGGCGA 297
|||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 238 TCGTCGATAAACCTAATCTGATAAGGTTAAAGAGCAGCCACGGCACGTACTTAACGGCGA 297
Query 298 GCAATAAACCGTTATTGTTAGGTATGACCGGTGAGAAAGTGACTCAAACGGCGTCGTTTA 357
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCAACAAACCGTTATTGTTAGGTATGACCGGTGAGAAAGTGACTCAAACGGCGTCGTTTA 357
Query 358 ACAAGCTCATGGATTGGCAAACGCAGTGGGAACCGGAGCGAGATGGGTTTCAGGTGAAGC 417
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACAAGCTGATGGATTGGCAAACGCAGTGGGAACCGGAGCGAGATGGGTTTCAGGTGAAGC 417
Query 418 TGAAGTCGTGGTGCGGGAAGTGGATGAGGGCTAACGGTGGAACGCCGCCGTGGAGAAACT 477
| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TAAAATCTTGGTGCGGTAAGTGGATGAGGGCTAACGGTGGAACGCCGCCGTGGAGAAACT 477
Query 478 CCGTTACTCACGACGAGCCTCATACGTCGAAGACCAAGAACTGGTTGATTTGGGATGTTA 537
| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 478 CTGTTACTCACGATGAGCCTCATACGTCAAAGACAAAGAACTGGTTGATTTGGGATGTTA 537
Query 538 TAACTCTTGATGGTTCTGATTTTGAAAACATGTCTGATGGTGATGAGAGCTCTGTTTCTT 597
||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 538 TAACTATTGATGGTTCTGATCTTGAAAACATGTCTGATGGTGATGAAAGCTCTGTTTCTT 597
Query 598 CTCCGGTTGGGTCTGAATTCGGGTCAGAACCCGGGTCGCCCG-CTCATG-CGGTGTCTAC 655
||||||| |||||||||||||| |||||||||||||| || | || || | | ||||||
Sbjct 598 CTCCGGTCGGGTCTGAATTCGGATCAGAACCCGGGTCACCTGTTTC-TGCCAG-GTCTAC 655
Query 656 GAAGAGTAGTATTAGCCGGTTCGCTTCTCTTGGTTTACCTATGTCTCCGAGATGGTCCTC 715
||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct 656 GAAGAGTAGTATTAGCCGGTTTGCTTCTCTTGGTTTATCTACGTCTCCGAGATGGTCCTC 715
Query 716 AAAACCGAAGTCGACGACGAGTAGCTTCAACCAAAAAGAAACAACAGTATCTGTATCAGC 775
|||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||
Sbjct 716 AAAACCGAAGTCGACGGCGAGTAGCTTCAACCAAAAAGAAACACCAGTATCTGTCTCAGC 775
Query 776 AATGGAGTTTTTCCAGAGAGCTAAAGCTATTCGAATGCGTAACAGTCACAACAAGTATCT 835
|||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 776 AATGGAATTTTTCCAGAAAGCAAAAGCTATTCGAATGCGTAACAGTCACAACAAGTATCT 835
Query 836 AACAGCAGACGACGACGAAGAAACCATAACACAAAACCGAAACGGATCTACCAAAAACGC 895
||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 836 AACAGCAGACGACGATGAAGAAACCGTAACTCAAAACCGTAACGGATCTACCAAAAACGC 895
Query 896 TCGATGGATCGTCGAACCGGTTCGTGATTCGTTCCATGTGATTCGTCTTAAAAGCTGTTA 955
|||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 896 TCGATGGACCGTCGAACCGGTTCGTGATTCTTTCCATGTTATTCGTCTTAAAAGCTGTTA 955
Query 956 CGGTAAATACTTAACCGCTTCTAACGAACGGTTCTTGCTCGGAGCTACGGGGAAGAAAGT 1015
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 956 CGGTAAGTACTTAACCGCTTCTAACGAGCGGTTCTTGCTCGGGGCTACGGGGAAGAAAGT 1015
Query 1016 GATTCAGTTGAAACTGAGTCGGCTTGATTCGTCTGTTGAATGGGAACCGCTTAGAGAAGG 1075
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1016 GATTCAGTTGAAACTGAGTCGGGTTGATTCGTCTGTTGAGTGGGAACCGCTTAGAGAAGG 1075
Query 1076 ATCTAAGATTAAGCTTAGGACTAGATCTGGTAACTTTTTACG-GGCTAATGGTGGTCTTC 1134
|||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 1076 GTCTAAGATTAAGCTTAGGACTAGATCTGGTAACTATTTACGAGG-TAATGGTGGTCTTC 1134
Query 1135 CTCCGTGGAGAAACTCGGTCACACACGACGTTCCTCATTTGTCTGCTACTCAGGATTCGA 1194
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CTCCTTGGAGAAACTCGGTCACACACGACGTTCCTCATTTGTCTGCTACTCAGGATTCGA 1194
Query 1195 TTTCTTGGGATGTTGATGTTGTTGAGATCTTGACTGATTCTGAATTCAAGACGGAGTCTC 1254
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1195 TTTCTTGGGATGTTGATGTTGTTGAGATCTTGACTGATTCCGAATTCAAGACGGAGTCTG 1254
Query 1255 CGAAAGCGCC---ACCGAAGACGACGTCGCCACCGCCGCATCGGAGACCGACCAATTCGC 1311
|||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 1255 CGAAAGCGCCGCCACCGAAGACGACGTCTCCACCGCCGCATCGGAGACCGACGAGTTCGC 1314
Query 1312 CGTTGTCGGCTGAGTCTCCAAGGACTTCGTCTTCTCTTTCAGACAGATCCGATTCAGATT 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CGTTGTCGGCTGAGTCTCCAAGGACTTCGTCTTCTCTTTCAGACAGATCCGATTCAGATT 1374
Query 1372 CGGTTGAGTCTCCGCCTAAATCTGATGGGCGAACCATATATTACCATATCGCTGATGAAG 1431
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |
Sbjct 1375 CGGTTGAGTCTCCGCCTAAATCTGATGGACGAACCATATATTACCATGTCGCTGACGAGG 1434
Query 1432 AAGGACACGTGGAGGATGAAACAACGGTTGGATATGCTTTCACGTTTAAAGGAAACAGCG 1491
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1435 AAGGACACGTGGAAGATGAAACAACCGTTGGATATGCTTTCACGTTTAAAGGAAATAGCG 1494
Query 1492 TGGCGGAACTGACTCAGACATTGCGAGAAGAAACGTGCATGGAAGACGCTGTGGTTTGCA 1551
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1495 TGGCGGAGCTGACTCAGACATTGCGAGAAGAAACGTGCATGGAAGACGCTGTGGTGTGTA 1554
Query 1552 CTCGTAGTCAGATAAACGGCAAGCTGTTCCCTCTTCGTTTGCAACTTCCTCCTAACAACG 1611
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1555 CTCGTAGTCCTTTAAACGGCAAGCTGTTTCCTCTTCGTTTGCAACTTCCTCCTAACAACG 1614
Query 1612 GAACATTGCATGTCGTTGTATTACCTTCCAGCGCTAGCCTCTAGA--CG-C--GTGACTA 1666
|||||||||||||| || || |||| |||||||| |||||||||| || | | ||| |
Sbjct 1615 GAACATTGCATGTCATTTTACTACCCTCCAGCGCGAGCCTCTAGAATCGACCCGAGACAA 1674
Query 1667 TGCGATAGTGATGATCGGATTGGGTTCTTGTTTGGTGAAGCATATGATATGAACCTTATA 1726
| || | ||| | | | |||| || |||||||||||||||||||||||||||| ||||
Sbjct 1675 TTAGAAA-TGA-G-T-G-ATTGTGTGATTGTTTGGTGAAGCATATGATATGAACCGTATA 1729
Query 1727 AGAAGATAGTAAGAGTTGGTAGTTG 1751
|||||||||||||||||||||||||
Sbjct 1730 AGAAGATAGTAAGAGTTGGTAGTTG 1754
Score = 95.3 bits (51), Expect = 2e-18
Identities = 62/67 (93%), Gaps = 2/67 (3%)
Strand=Plus/Plus
Query 1816 AAATAAGCTATTTCTTGGTAAACGAAC-TTGTGGATCTTGGGGGTTTATTTGTGTGAGCA 1874
|||||||| ||||||| |||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1899 AAATAAGCGATTTCTTTGTAAACGAACATT-TGGATTTTGGGGGTTTATTTGTGTGAGCA 1957
Query 1875 TGGATTC 1881
|||||||
Sbjct 1958 TGGATTC 1964
Score = 82.4 bits (44), Expect = 2e-14
Identities = 51/54 (94%), Gaps = 1/54 (2%)
Strand=Plus/Plus
Query 1769 GTAAGAGTTTTGATAATAGGAAGGACTTATAAATTCtttttttGGGGAA-ATAA 1821
||||||||||||||||||||||||||||||||||| |||||| |||||| ||||
Sbjct 1828 GTAAGAGTTTTGATAATAGGAAGGACTTATAAATTATTTTTTGGGGGAATATAA 1881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94979431140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5