BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472693
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27090.1 | Symbols: | glycine-rich protein | chr1:9403900-9... 2331 0.0
> AT1G27090.1 | Symbols: | glycine-rich protein | chr1:9403900-9406256
REVERSE LENGTH=1562
Length=1562
Score = 2331 bits (1262), Expect = 0.0
Identities = 1464/1560 (94%), Gaps = 20/1560 (1%)
Strand=Plus/Plus
Query 1 AAAAACCAGACGCTTCAACTTTATCCCCATTTCTCTGAAAACCCTAACAAATCCTCCTCT 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACCAGACGCTTCAAC-TTATCCCCATTTCTCTGAAAACCCTAACAAATCCTCCTCT 59
Query 61 TGCTCCGCCACCGCCGCCGCCGCTATTCAACGGTGGTG-ATATATCTCAGT-CATTCACT 118
|| |||||||| ||||||||||||| |||||||||||| || | ||| | | | ||| |
Sbjct 60 TGTTCCGCCACTGCCGCCGCCGCTACTCAACGGTGGTGAAT-TTTCT-A-TACGGTCAGT 116
Query 119 TCGATCCTC-TTTCATCGATAATCCTACAAAAATCCACAATCATGGCCGCCACTGCTTCC 177
||||||||| ||| ||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 117 TCGATCCTCTTTTTATCGACAATCCTACACAAATCCATAATCATGGCCGCCACTGCTTCC 176
Query 178 TCTGAATCTTCTGAAGGACCAGTGATGGGTCTCATCAACAAGCGTCTCCGTGCTCTCCGC 237
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TCCGAAGCTTCTGAAGGACCAGTGATGGGTCTCATCAACAAGCGTCTCCGTGCTCTCCGT 236
Query 238 AAGAAATACAACCGAATCACTCAAATGGAAGAATCAATTTCTCAGGGCAAAACCCTAAAC 297
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 237 AAGAAATACAACCGAATCACTCAAATGGAAGAATCGATTTCTCAAGGCAAAACCCTAAAC 296
Query 298 AAGGAGCAAGAAGAAGTCCTCCGCTCTAAACCAGCCGTCGTCATCCTTATTGAAGAGCTT 357
|||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||
Sbjct 297 AAGGAGCAAGAAGAAGTCCTCCGCTCTAAACCTGCCGTCGTCATCCTAATCGACGAGCTT 356
Query 358 GAAAAGATCCGTGCTCCTCTCTCCGCCGCTGTTG-CAGAAGAAATCAGCCTCGCTACTCA 416
||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct 357 GAAAAGATCCGTGCTCCTCTCTCCGCCGCTG-TGACAGAGGAAATCAGCCTCGCTACTCA 415
Query 417 GCATAACCGTGCTCCCTCCGATCAAACCACCGCGTCTGAGCAAAAGGAAGTCACTGATAT 476
|| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 416 GCTTAACCGTGCTTCATCCGATCAAACCACCGCATCTGAGCAAAAGGAAGTCACTGATAT 475
Query 477 TCCTCAGGAAGTTAGCGGCGGTGATGGTGGCGCTAAGTTGGAGGATCTGGTGAATCTCCT 536
|| ||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||
Sbjct 476 CCCGCAGGAAGTTAGCGGCGGCGATGATGGCGCTAAGTTGGAGGATCTGGTGAATTTCCT 535
Query 537 CTACTTTGGTTCACTCTTCGACGTCAAGTCACAGAACGAGTTCACTTCGATAATGTTGAC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTACTTTGGTTCACTCTTCGACGTCAAGTCACAGAACGAGTTCACTTCGATAATGTTGAC 595
Query 597 CAGGACTCATGAGAGAAGTTGCTGCTTGTCTTACGATTACGTTACCGATGATGCCACTGA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CAGGACTCATGAGAGAAGTTGCTGCTTGTCTTACGATTACGTTACCGATGATGCCACTGA 655
Query 657 TCTCCTTGGCGATCGGGATTTGGATTCTCTTTCTCAGCTTTGGAGCTTGATGGTTTCTCG 716
|||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 656 TCTCCTCGGCGATCGGGATTTGGATTCTATTTCTCAGCTTTGGAGCCTGATGGTTTCTCG 715
Query 717 TCCGGTGGATTCAAGCTTATCTCACAAGAACGCTTTGGAGCGTTGTGTTGAGCACGCAAA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 716 TCCGGTGGATTCAAGCTTATCTCACAAGAACGCTTTGGAGCGTTGTGTTGAGCACGCTAA 775
Query 777 GCTTTGGTTAGCTAATTCGGAGCAGCCAATTGAATCAAACTGCAACATTTCATATGCTGC 836
||| |||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||
Sbjct 776 GCTATGGTTAGCTAATTCCGAGCAGCCAATCGAATCAAACTGCAATACTTCATATGCTGC 835
Query 837 ATTGAGAGAGAAGTTGAAGAAGATTATGGGGTCTGACTATTTCACTACTACGCCGGAGAT 896
||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||
Sbjct 836 ATTGAGAGAGAAGTTGAAGAAGATTATGGCGTCTGACTATTTCACCACTACTCCGGAAAT 895
Query 897 GAAAGCTCCTGTTGATGTGGCGGCTGCTGCTGGTAACTACACTTCTTACCAGGTACCTGT 956
||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 896 GAAAGCTCCGGTTGATGTGGCGGCTGCAGCTGGTAACTATACTTCTTACCAGGTGCCTGT 955
Query 957 GGATGTGGAGGCTTCAGGGAACTACCAGCAAAAGGAAGAAGATGCATCAAATTTCAAAGA 1016
||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 956 GGACGTGGAGGCTTCAGGGCATTACCAGCAAAAGGAAGAAGATGCATCAAATTCCAAAGA 1015
Query 1017 AGAAGAATCAGTTGTTAATGATCAATCTCCACAAGATGAGCGA-CAAAAGGTTGAGTCAG 1075
|| |||||||||||||||||||||||||| ||||||||||| | ||||||||||||| ||
Sbjct 1016 AGTAGAATCAGTTGTTAATGATCAATCTCAACAAGATGAGC-ATCAAAAGGTTGAGTTAG 1074
Query 1076 TGACTGAAAGAGAGGTGATCCATGGACAACAAGAACAGGGCTATACTCAGGTGGGAG--- 1132
|||| ||| |||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1075 TGACCGAAGGAGAGGTGGTCCATGGACAGCAAGAACAGGGCTATACTCAGGTGGGAGGAG 1134
Query 1133 CAGAGAATGCTAAGAGAGACTATGTGCCACGTGGGTCTTACCAGAACCAGAGAGGTCGTC 1192
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1135 CAGAGAATGCTAAAAGAGACTATGTGCCACGTGGGTCTTACCAGAACCAAAGAGGTCGTC 1194
Query 1193 gaggtgctcggagaggtggtggtggtggctaccagaatgggcgaggaggtcgaggtggtg 1252
|||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 1195 GAGGTGCTCGAAGAGGTGGTGGTGG---CTATCAGAATGGGCGAGGAGGACGAGGTGGTG 1251
Query 1253 gtggtggCTACCAGAATGGGCGATACGAAACTTATGATCAATCTGGTGGAAACGGTTACC 1312
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
Sbjct 1252 GTGGTGGCTACCAGAATGGGCGGTACGAATCTTATGATCAATCTGGTGGAAACGGTTATC 1311
Query 1313 AAAGGAACTACTACAACAACAGAGGAAGGGGACGTGGTGGTGGTGGTGG---AGGAAATG 1369
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1312 AAAGGAACTACTACAACAACAGAGGAAGGGGACGTGGTGGTGGTGGTGGTGGAGGAAATG 1371
Query 1370 GCCATTCATACAACAACTACCAAGACCCCAATGTTACTGTTGCGTCTTAGCTTTTGTGCC 1429
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1372 GCCATTCATACAACAACTACCAAGACCCCAATGTTGCTGTTGCGTCTTAGCTTTTGTGCC 1431
Query 1430 TGTGTCTTTTGGGTGCGTCTCTTTCGTTATCTTGCGTTTATTCTATAACTCATATAAGCC 1489
| ||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct 1432 TCTGTCTTTTGGGTGCGTCTCTTTCATTATCTTGCGTTTATGCTATAACGCATATAAGCC 1491
Query 1490 AAATCTTTTGTTTGAAACGTTTGACAATGGCTCGGTTTTTGCTATGAACTTTTGTTTTTT 1549
||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1492 TAATCTCGTGTTTGAAACGTTTGACAATGGCTCGGTTATTGCTATGAACTTTTTTTTTTT 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76455430035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5