BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472699
Length=1148
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27020.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1559 0.0
> AT1G27020.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G27030.1);
Has 514 Blast hits to 514 proteins in 175 species: Archae
- 0; Bacteria - 311; Metazoa - 0; Fungi - 0; Plants - 65; Viruses
- 0; Other Eukaryotes - 138 (source: NCBI BLink). | chr1:9378559-9380692
FORWARD LENGTH=1276
Length=1276
Score = 1559 bits (844), Expect = 0.0
Identities = 1024/1107 (93%), Gaps = 28/1107 (3%)
Strand=Plus/Plus
Query 1 CATGGGTTCTCTTGATTTGCCTTACGCTTCATCGTTCAAGGGAGGAAGTGAAACATTTCT 60
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 76 CATGGGTTCTCTTGACTTGCCTTACGCTTCATCGTTCAAGGGAGGAAGTGAAACCTTTCT 135
Query 61 CCAGAATGTGTTTGAAAGTATACTGAAAACGTATTTGAGGAAGAACCCGATGGCGAAGAC 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CCAGAATGTATTTGAAAGTATACTGAAAACGTATTTGAGGAAGAACCCGATGGCGAAGAC 195
Query 121 GATATGGGAACTAGTTAAGTCGGTGGACAACGAAAAGATCTCTTACGACCACTTCTTTTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GATATGGGAACTAGTTAAGTCGGTGGACAACGAAAAGATCTCTTACGACCACTTCTTTTT 255
Query 181 CAGGACATTTAAGGTTGATGGTTACGGAATTGATTCCTTGTCAAGTTTTTTCATGGATTA 240
||||||||||||||| |||||||| |||||||||||| || | |||||||||||||||||
Sbjct 256 CAGGACATTTAAGGTCGATGGTTATGGAATTGATTCCCTGGCGAGTTTTTTCATGGATTA 315
Query 241 TGGATATAAAGTTGGAGGCAGACTTGATTTTCCAAAGAAGAAAGTACAAGTTCTCTGGCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 TGGATATAAAGTTGGAGGCAGACTTGATTTTCCAAAGAAGAAAGTACAAGTTCTCTGGCT 375
Query 301 TTCTCCTCCAGATATTCACGTCCCCGATAATGGTTATGGTATAGGCAATGGCCCTTTGCC 360
||||||||| ||| ||||| |||||||||||||||| ||||| |||||||||||||||||
Sbjct 376 TTCTCCTCCGGATGTTCACTTCCCCGATAATGGTTACGGTATTGGCAATGGCCCTTTGCC 435
Query 361 ACGACTTGTTATAGCTGAGCTTCTTGTGGATGAACTAAGCCATGAATCACAGGAGATAAT 420
| |||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct 436 AAGACTTGTTATAGCTGAGCTTCTTGTGGAGGAACTAAGCCCTGAGTCACAGGAGATAAT 495
Query 421 AAGGAAGTATTTGAAACCGGAAGGTGGTAAGCAAGCGGTTCTTTCAAGTACTTTGGGCTC 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 496 AAGGAAGTATTTGAAACCGGAAGGTGGTAAGCAAGCTGTTCTTTCAAGTACTTTGGGGTC 555
Query 481 TATAATTTGGGAGAAGCCAACATCCACCGATTTCAATCAACTTGCTAAAGAAAGCGAATT 540
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 556 TTTAATTTGGGAGAAGCCAACATCCACCGATTTCAATCAACTTGCCAAAGAAAGCGAATT 615
Query 541 TGCGGCATGGACACTTGTCCACGGCTACACAATGAACCATCTTGCTTTCGCGGTTCATCG 600
||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 616 TGCCGCATGGACGCTTGTCTACGGCTACACAATGAACCATCTTGCTTTCGCGGTTCATCG 675
Query 601 TCTTAAACACCGTTTCAGCGACATCAAATGTGTCAAAGAGTATTTTGAAGAAAATGGATT 660
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 676 TCTTAAACACCGTTTCAGCGACATCAAATGCGTCAAAGAGTATTTTGAAGAAAACGGTTT 735
Query 661 CGAACTCAACAAGGATGGAGGAGTTCTCAAAGTGAGTCAAGATGGTCTACTGTTACAAGT 720
|||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 736 CGAACTCAACAAGGATGGAGGAGTCCTCAAAGTGAGTGAAGACAGTCTACTGTTACAAGT 795
Query 721 GTCGGCTATGTCAGAGAAGCTTGTGGTTGAATTTGCAGACGGAGTAACTCAAACCGTCCC 780
|||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 796 GTCGGCTATGTCGGAGAAACTTGTGGTTGAATTTGCAGACGGAGTAACTCAAATCGTCCC 855
Query 781 CGCTTCTTACGTTGAGTTCATTGACCGTCTAGTTCTCCCACAGTTCAAAGATATGCCGCG 840
||||| ||| |||||||| |||| ||||||||||| ||||||||||||||||||||| |
Sbjct 856 GGCTTCATACATTGAGTTCGTTGAACGTCTAGTTCTTCCACAGTTCAAAGATATGCCGTG 915
Query 841 TGATGAGATCAAAGAGCTTCATAGACGCGAGGGTTTAGAGCAAGCTAGCGCCTACCACAT 900
|||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 916 TGATGAGATCAAAGAGTTTCATAGACGCGAGGGCTTGGAGCAAGCTAGCGCCTACCACAT 975
Query 901 AATGGAAAGCACCCGTTTCACAGCATAAGTGTAGAACCAGCTTGTCTTGTTCAGCTCAAT 960
|||||||||||||||||||||||| ||| | |||||||||||||| |||||| |||||||
Sbjct 976 AATGGAAAGCACCCGTTTCACAGCGTAAATATAGAACCAGCTTGTTTTGTTCCGCTCAAT 1035
Query 961 ATGTCAAGTATGTGTAC-T--T-T------G----G-A-CA-ATTTG-A------GTGTG 996
||||||||||||||||| | | | | | | | ||||| | |||||
Sbjct 1036 ATGTCAAGTATGTGTACGTACTATTAAAATGTTTTGTATCTTATTTGGACAATTTGTGTG 1095
Query 997 --AGATCTTTATGTTCTTCTCTTGTGAAGTGACGGTA-A-CTTAATATTAACCGTTACCG 1052
|||| ||| ||||||| | |||||||||||||||| | |||||||||| |||||||||
Sbjct 1096 TGAGATATTTCTGTTCTTGTGTTGTGAAGTGACGGTATAACTTAATATTACCCGTTACCG 1155
Query 1053 ACGAATAATGGAAAACAAAGTGTCATG 1079
|||||||||||||||||||||||||||
Sbjct 1156 ACGAATAATGGAAAACAAAGTGTCATG 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56325011490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5