BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472702
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26970.1 | Symbols: | Protein kinase superfamily protein | ... 1960 0.0
AT1G69790.1 | Symbols: | Protein kinase superfamily protein | ... 712 0.0
> AT1G26970.1 | Symbols: | Protein kinase superfamily protein
| chr1:9359682-9361833 FORWARD LENGTH=1550
Length=1550
Score = 1960 bits (1061), Expect = 0.0
Identities = 1221/1299 (94%), Gaps = 7/1299 (1%)
Strand=Plus/Plus
Query 1 ATGGGCAATTGCTTT-GATTCTTCCGCAAAAGTAGATAGCAGAGAAAGTCCTTGTCGTGG 59
||||| ||||||||| | || |||||||||||||| || ||||||||||||| ||||||
Sbjct 145 ATGGGAAATTGCTTTGGGTT-TTCCGCAAAAGTAGGTAATAGAGAAAGTCCTTATCGTGG 203
Query 60 TTTATCAAGAATCTCTGCCAAAAGAAGTCAATCGTCTCGGTTTTCAAGCTTAACCATACA 119
|| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 204 TTCGTCAAGAATCTCTGCCAAAAGAAGTCAATCGTCTCGGCTTTCAAGCTTAACAATACA 263
Query 120 ATCACCATCTTACAACGATGACA-GTAGTTTGGCGTCTCTTCAAATGCCGAGAAGTGAAG 178
|||| |||||||||||||||||| | ||| ||||||||||||||| ||| ||||||||||
Sbjct 264 ATCATCATCTTACAACGATGACACG-AGTGTGGCGTCTCTTCAAACGCCTAGAAGTGAAG 322
Query 179 GAGAGCTCTTAGCATCTCCCACGCTAAAGGCGTTTACATTTAACGAGCTAAAGACAGCCA 238
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 323 GAGAGCTCTTAGCATCGCCCACGCTAAAGGCATTTACGTTTAACGAGCTAAAGACAGCCA 382
Query 239 CTAGGAATTTCAGACCCGATAGTGTTATTGGTGAAGGCGGTTTTGGTTATGTCTACAAAG 298
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 383 CTAGGAATTTCAGACCCGATAGTGTTATCGGTGAAGGCGGTTTCGGTTATGTCTACAAAG 442
Query 299 GATGGATCGATGAACGCACTTTATCGCCTTCAAAACCGGGGTCAGGCATGGTCGTTGCTG 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 443 GATGGATCGATGAACGCACTTTATCGCCTTCAAAACCAGGGTCAGGCATGGTCGTTGCTG 502
Query 359 TCAAAAAGCTTAATGAAGACGGGTTTCAAGGACACAGGCAGTGGTTGGCGGAGGTTGATT 418
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TCAAAAAGCTTAAAGAAGAAGGGTTTCAAGGACACAGGCAGTGGTTGGCGGAGGTTGATT 562
Query 419 GTCTTGGGAGGCTTCACCATATCAATCTTGTGAAACTAATTGGATACTGCTCAAAGGGTG 478
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 563 GTCTTGGGAGGCTTCACCATATGAATCTTGTGAAACTAATTGGATATTGCTCGAAGGGTG 622
Query 479 ATTTTATTCGGCTTTTGGTGTATGAGTACATGCCAAAGGGAAGCTTGGAGAATCATCTCT 538
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 ATCATATTCGGCTTTTGGTGTATGAGTACATGCCAAAGGGAAGCTTGGAGAATCATCTCT 682
Query 539 TTAGACGTGGGGCAGAGCCTATTCCGTGGAAAACAAGGATGAAAGTGGCGATTAGTGCGG 598
|||||||||||||||| || |||||||||| ||||||||| |||||||| || ||||||
Sbjct 683 TTAGACGTGGGGCAGAACCGATTCCGTGGAGAACAAGGATTAAAGTGGCTATCGGTGCGG 742
Query 599 CGAGAGGGCTTGCTTTTCTTCATGACGCTCAAGTCATATATAGAGACTTCAAGGCCTCCA 658
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 743 CGAGAGGGCTTGCTTTCCTTCATGAAGCTCAAGTCATATACAGAGACTTCAAGGCCTCCA 802
Query 659 ATATTTTACTTGATTCGGAATTCAATGCAAAGCTTTCAGATTTTGGATTGGCGAAAGTAG 718
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 803 ATATTCTACTTGATTCGGAATTCAATGCAAAGCTTTCTGATTTTGGATTGGCGAAAGTAG 862
Query 719 GACCAACCGGAGACAGAACACACGTATCAACCCAAGTGATGGGAACTCAAGGCTATGCAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 GACCAACCGGAGACAGAACACACGTATCAACCCAAGTGATGGGAACTCAAGGCTATGCAG 922
Query 779 CACCTGAATACGTTGCCACTGGTCGGATAACGGCCAAAAGCGACGTCTACAGCTTCGGTG 838
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 923 CACCTGAATACGTTGCCACTGGTCGGATAACAGCCAAAAGTGACGTCTACAGCTTCGGTG 982
Query 839 TGGTCTTGCTCGAGTTACTGTCGGGACGTCCGTCCATAGACAAATCGAAAGTAGGAGTGG 898
|||||||||| ||||||||||||||||||| | || |||||||| |||||||||||||||
Sbjct 983 TGGTCTTGCTAGAGTTACTGTCGGGACGTCTGACCGTAGACAAAACGAAAGTAGGAGTGG 1042
Query 899 AACGAAATCTGGTTGATTGGTCAAGACCTTACTTAGGAGACAAAAGGAAAGTGTTTAGGA 958
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1043 AACGAAATCTGGTTGATTGGGCAATACCTTACTTAGGAGACAAAAGGAAAGTGTTTAGGA 1102
Query 959 TAATGGACACAAAACTTGGGGGACAGTATCCTCACAAAGGAGCTTGTTTGGCCGCTAATA 1018
||||||||||||| ||||||||||| |||||||||||||||||||||||| | |||||||
Sbjct 1103 TAATGGACACAAAGCTTGGGGGACAATATCCTCACAAAGGAGCTTGTTTGACTGCTAATA 1162
Query 1019 CTGCGTTGCAATGTCTTAATCAAGAACCTAAGTTGAGGCCAAAGATGTATGATGTGTTAT 1078
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1163 CTGCGTTGCAATGTCTTAATCAAGAACCTAAGTTGAGGCCAAAGATGTCTGATGTGTTAT 1222
Query 1079 CTACTCTTGAAGAGTTGGAGATGACGTTGAAGTCGGATTCTACTTCAAACTCGGTCATGA 1138
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 1223 CTACTCTTGAAGAGTTGGAGATGACGTTGAAGTCGGGTTCTATTTCAAACTCGGTTATGA 1282
Query 1139 CATTGACATCTTCTTCCTCTTCTTTGACGGCGAAACAGAGAGTTAGAGCTCCGGTTGCTG 1198
|||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 1283 AATTGACATCTTCTTCCTCTTCTTTCACGGCGAAACAGAGAGTAAGAACTCCGGTTGCTG 1342
Query 1199 ATGCGGTGTTGTCTACTAGAAGATGTCGTCGTGTTCAGTGAAGTAGCAACATA-ACTAGT 1257
|| |||||||||||| |||| ||||||| ||||||| |||||||||| ||| | | ||||
Sbjct 1343 ATCCGGTGTTGTCTAGTAGACGATGTCGACGTGTTCGGTGAAGTAGCGACAGAGA-TAGT 1401
Query 1258 TAGGCTTTATGAGTGTATGCAttttttgtt-tttgtttt 1295
|||| |||||||||| ||||||||||| || ||| ||||
Sbjct 1402 TAGGTTTTATGAGTGCATGCATTTTTTTTTGTTTTTTTT 1440
> AT1G69790.1 | Symbols: | Protein kinase superfamily protein
| chr1:26266609-26269013 FORWARD LENGTH=1588
Length=1588
Score = 712 bits (385), Expect = 0.0
Identities = 751/927 (81%), Gaps = 27/927 (3%)
Strand=Plus/Plus
Query 169 AGAAGTGAAGGAGAGCTCTTAGCATCTCCCACGCTAAAGGCGTTTACATTTAACGAGCTA 228
||||||||||||||||||||| ||||||| || |||||||| |||||||| |||||||||
Sbjct 401 AGAAGTGAAGGAGAGCTCTTACCATCTCCAACACTAAAGGCCTTTACATTCAACGAGCTA 460
Query 229 AAGACAGCCACTAGGAATTTCAGACCCG-ATAGTGTTATTGGTGAAGGCGGTTTTGGTTA 287
|| || || ||||| || |||| | ||| ||||| | ||||||||||||||||||||||
Sbjct 461 AAAACCGCTACTAGAAACTTCA-AGCCGAATAGTATGATTGGTGAAGGCGGTTTTGGTTG 519
Query 288 TGTCTACAAAGGATGGATCGATGAACGCACTTTATCGCCTTCAAAACCGGGGTCAGGCAT 347
|||||| || || ||||||| ||||||| | || || ||||| ||||| ||||| || ||
Sbjct 520 TGTCTATAAGGGTTGGATCGGTGAACGCTCGTTGTCACCTTCGAAACCAGGGTCCGGTAT 579
Query 348 GGTCGTTGCTGTCAA-AAAGCTT-AATGAAGACGGGTTTCAAGGACAC-AGGCAGTGGTT 404
||| ||||| ||||| ||| ||| ||| ||| ||||||||||||||| | | |||||||
Sbjct 580 GGTTGTTGCAGTCAAGAAA-CTTAAAT-CAGAAGGGTTTCAAGGACACAAAG-AGTGGTT 636
Query 405 GGCGGAGGTTGATTGTCTTGGGAGGCTTCACCATATCAATCTTGTGAAACTAATTGGATA 464
| | |||||| ||| ||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 637 GACTGAGGTTCATTATCTTGGGAGACTTCATCATATGAATCTTGTGAAGCTAATTGGATA 696
Query 465 CTGCTCAAAGGGTGATTTTATTCGGCTTTTGGTGTATGAGTACATGCC-AAAGGGAAGCT 523
|||| | |||| || | | |||||||| || ||||||||||| ||| ||||||
Sbjct 697 TTGCTTAGAGGGAGA---GAAAAGACTTTTGGTTTACGAGTACATGCCTAAA-GGAAGCC 752
Query 524 TGGAGAATCATCTCTTTAGACGTGGGGCAGAGCCTATTCCGTGGAAAACAAGGATGAAAG 583
||||||| ||||| ||| || | || |||||||| ||||||||||| || ||||||||||
Sbjct 753 TGGAGAACCATCTATTTCGAAGAGGCGCAGAGCCAATTCCGTGGAAGACTAGGATGAAAG 812
Query 584 TGGCGATTAGTGCGGCGAGAGGGCT-TGCTTTTCTTCATGACGCTCAAGTCATATATAGA 642
| || |||| || |||||||| || | |||| || || || ||| |||||||||| ||
Sbjct 813 TAGCTTTTAGCGCAGCGAGAGGACTAT-CTTTCCTCCACGAAGCTAAAGTCATATACCGA 871
Query 643 GACTTCAAGGCCTCCAATATTTTACTTGAT-TCGGAATTCAATGCAAAGCTTTCAGATTT 701
|||||||||||||| |||||| |||||||| | ||| |||||||||||||| || |||||
Sbjct 872 GACTTCAAGGCCTCTAATATTCTACTTGATGT-GGATTTCAATGCAAAGCTATCTGATTT 930
Query 702 TGGATTGGCGAAAG-TAGGACCAACCGGAGACAGAACACACGT-ATCAACCCAAGTGATG 759
||| ||||| |||| | |||||||| ||||| ||||| || || | |||| ||||||||
Sbjct 931 TGGGTTGGCAAAAGCT-GGACCAACAGGAGATAGAACGCATGTGA-CAACTCAAGTGATA 988
Query 760 GGAACTCAAGGCTATGCAGCACCTGAATACGTTGCCACTGGTCGGATAACGGCCAAAAGC 819
|| || ||||| || ||||| || |||||| | || || || ||| |||| |||| ||
Sbjct 989 GGCACACAAGGGTACGCAGCTCCGGAATACATAGCAACCGGCCGGTTAACCTCCAAGAGT 1048
Query 820 GACGTCTACAGCTTCGGTGTGGTCTTGCTCGAGTTACTGTCGGGACGTCCGTCCATAGAC 879
|| ||||| ||||| || ||||| |||||||| |||| ||||| ||||| || |||||
Sbjct 1049 GATGTCTATAGCTTTGGAGTGGTGTTGCTCGAACTACTCTCGGGTCGTCCCACCCTAGAC 1108
Query 880 AAATCGAAAGTAGGAGTGGAACGAAATCTGGTTGATTGGTCAAGACCTTACTTAGGAG-A 938
||||||||||||||||||||||| || ||||| |||||| ||| |||||| || || | |
Sbjct 1109 AAATCGAAAGTAGGAGTGGAACGTAACCTGGTGGATTGGGCAATACCTTATTT-GGTGGA 1167
Query 939 CAAAAGGAAAGTGTTTAGGATAATGGACACAAAACTTGGGGGACAGTATCCTCACAAAGG 998
|| ||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1168 CAGAAGAAAAGTGTTTAGAATAATGGACACAAAGCTTGGAGGACAGTACCCTCACAAAGG 1227
Query 999 AGCTTGTTTGGCCGCTAATA-CTGCGTTGCAATGTCTTAAT-CAAGAACCTAAGTTGAGG 1056
|||||| || || || | | || |||| ||||| ||| | ||||||||| | ||
Sbjct 1228 GGCTTGTGCAGCTGCCAACATC-GCATTGCGGTGTCTCAATACC-GAACCTAAGCTCAGA 1285
Query 1057 CCAAAGATGTATGATGTGTTATCTACT 1083
|| | ||| |||||| ||||| |||
Sbjct 1286 CCGGATATGGCTGATGTCTTATCCACT 1312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63704491605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5