BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472703
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26960.1 | Symbols: AtHB23, HB23 | homeobox protein 23 | chr... 1729 0.0
AT1G69780.1 | Symbols: ATHB13 | Homeobox-leucine zipper protein... 357 1e-97
> AT1G26960.1 | Symbols: AtHB23, HB23 | homeobox protein 23 | chr1:9355920-9357460
FORWARD LENGTH=1195
Length=1195
Score = 1729 bits (936), Expect = 0.0
Identities = 1075/1137 (95%), Gaps = 30/1137 (3%)
Strand=Plus/Plus
Query 48 TAGCCTATAAGTGGTGTATAATCTA-AC-AC-GATTCATTTCACCACCATCCTTCTTCTT 104
|||||||||||||||||||| || | | | |||||||||||||||||||||||||||
Sbjct 69 TAGCCTATAAGTGGTGTATACTC-AGTCTTCTAATTCATTTCACCACCATCCTTCTTCTT 127
Query 105 CTTTATTTAGTTTTCTTTCTGTACTTTGAACCAAGACAAAGGTGGT-----GGAGAAGAA 159
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 128 CTTTATTTAGTTTTCTTTCTGTACTTTGAACCAAGAC-AAGGTGGTGGAGAGGAGAAGAA 186
Query 160 GAAAACAACTAACAAGAGACATGTCTTGTAATAATAATGGCTTAGCTTTCTTTCCTGAAA 219
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 187 GAAAACAACCAACAAGAGACATGTCTTGTAATAATAATGGCTTAGCTTTCTTCCCTGAAA 246
Query 220 ATTTCACTCTCCAAAACCATCACCAAGAAGAAGAAGATCATCCTCAACTTCTTCAAGACT 279
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 247 ATTTCAGTCTCCAAAACCATCACCAAGAAGAAGAAGATCACCCTCAACTTCTTCAAGACT 306
Query 280 TCCATGGGTTTCTAGGTAAGAGATCTCCAATGAACAACGTACAAGGGTTTTGTAATCTAG 339
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 307 TCCATGGGTTTCTAGGTAAAAGATCTCCAATGAACAACGTGCAAGGGTTTTGTAATCTAG 366
Query 340 ATATGAACGGAGATGAAGAATATTCAGACGATGGATCTAAGATGGGAGAGAAGAAGAGGA 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ATATGAACGGAGATGAAGAATATTCAGACGATGGATCTAAGATGGGAGAGAAGAAGAGGA 426
Query 400 GATTGAACATGGAACAACTGAAGGCGCTAGAGAAGAACTTTGAGCTTGGTAATAAACTTG 459
||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 427 GATTGAACATGGAACAATTGAAGGCACTAGAGAAGGACTTTGAGCTTGGTAATAAACTTG 486
Query 460 AATCAGATCGAAAATTAGAGCTGGCTCGTGCCTTGGGATTGCAACCTAGACAAATTGCTA 519
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 487 AATCAGATCGAAAATTAGAGCTAGCTCGTGCCTTGGGATTGCAACCTAGACAAATTGCTA 546
Query 520 TATGGTTCCAAAACAGAAGAGCTCGATCTAAAACCAAGCAGCTTGAGAAAGACTATGACA 579
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 547 TATGGTTCCAAAACAGAAGAGCTCGATCCAAAACCAAGCAGCTTGAGAAAGACTATGACA 606
Query 580 TGCTTAAGCGTCAATTCGAGAGTCTCAGAGATGAAAATGAAGTTCTTCAAACTCAAAATC 639
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 607 TGCTTAAGCGTCAATTCGAAAGTCTCAGAGATGAGAACGAAGTTCTTCAAACTCAAAATC 666
Query 640 AAAAGCTTCAAGCTCAGGTAATGGCATTGAAAATCAGAGAACCAATAGAATCAATCAATC 699
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 667 AAAAGCTTCAAGCTCAGGTAATGGCATTGAAAAGCAGAGAACCAATAGAATCAATCAATC 726
Query 700 TGAACAAAGAAACAGAAGGATCATGTAGTGACAGAAGTGAGAACATTTCTGGTGACATCA 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 TGAACAAAGAAACAGAAGGATCATGTAGTGACAGAAGTGAGAACATTTCTGGTGACATCA 786
Query 760 TACCACCGGAGATCGATAGCCAATTCGCAGTAGGCCATCCACCGACAACTACAACGATGC 819
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 787 GGCCACCGGAGATCGATAGCCAATTCGCCCTAGGCCATCCACCGACAACTACAACGATGC 846
Query 820 AGTTTTTTCAGAATTCATCGTCAGAACAGAGAATGGTGAAAGAAGAGAACAGTATCAGTA 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AGTTTTTTCAGAATTCATCGTCAGAACAGAGAATGGTGAAAGAAGAGAACAGTATCAGTA 906
Query 880 ACATGTTCTGTGGAATTGATGACCAGTCTGGGTTCTGGCCATGGCTTGACCAACAACAAC 939
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 907 ACATGTTCTGTGGAATTGATGACCAGTCTGGGTTCTGGCCATGGCTTGACCAGCAACAA- 965
Query 940 ATTACAATTGAATGTGGCCGATCtttttttGTTTGTATTAAAATTTTCGTTT-CTTTAAG 998
| |||||||||||||| |||||| || |||||||||||||||||||||||| |||||||
Sbjct 966 -T-ACAATTGAATGTGGTCGATCTGTTCTTGTTTGTATTAAAATTTTCGTTTTCTTTAAG 1023
Query 999 TGGTCAGATGAACCAATTTATGTTTCAAGAATCTATATTTATTAGTCTATATGCACCAAC 1058
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1024 TGGTCAGATGAACCAATTCATGTTTCAAGAATCTATATTTA---GTCTATATGCACCAAC 1080
Query 1059 TAAGCTAAAAACCACACTAttttttttGGGTAACGTGATGTAAGA---T-AATGGGGGAA 1114
||||||| || ||||||||||||| ||||||||||| | ||||||||||
Sbjct 1081 TAAGCTAG---------TAGTTTTTTTGGGTAATGTGATGTAAGAGAATTAATGGGGGAA 1131
Query 1115 ATATTCATCATATTATATAATAATTAATCAATCATATGGGCCATATGATTAGACATT 1171
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1132 ATATTCATCATATTATATGATAATTAATCAATCATATGGGCCATATGATTAGACATT 1188
Score = 89.8 bits (48), Expect = 5e-17
Identities = 48/48 (100%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1 TTGTCTCCTATTTTATATACTCATATAATAAACAAAATAAAACCAAAT 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGTCTCCTATTTTATATACTCATATAATAAACAAAATAAAACCAAAT 48
> AT1G69780.1 | Symbols: ATHB13 | Homeobox-leucine zipper protein
family | chr1:26258939-26260751 FORWARD LENGTH=1398
Length=1398
Score = 357 bits (193), Expect = 1e-97
Identities = 342/414 (83%), Gaps = 10/414 (2%)
Strand=Plus/Plus
Query 340 ATATGAACGGAGATGAAGAATATTCAGACGATGGATCTA-AGATGGGAGAGAAGAAGAGG 398
||||||| ||||| || || |||||||| ||||| || | | ||||||||||||||||||
Sbjct 430 ATATGAATGGAGAAGAGGATTATTCAGATGATGGGTC-ACAAATGGGAGAGAAGAAGAGG 488
Query 399 AGATTGAACATGGAACAACTGAAGGCGCTAGAGAAGAACTTTGAGCTTGGTAATAAACTT 458
|||||||||||||||||| ||||| | ||||||||||||||||||||||| || ||||||
Sbjct 489 AGATTGAACATGGAACAAGTGAAGACACTAGAGAAGAACTTTGAGCTTGGAAACAAACTT 548
Query 459 GAATCAGATCG-AAAATTAGAGCTGGCTCGTGCCTTGGGATTGCAACCTAGACAAATTGC 517
||| |||| | ||||| |||| ||||||||||| || |||||||| ||||| || ||
Sbjct 549 GAACCAGAGAGGAAAATGC-AGCTAGCTCGTGCCTTAGGTTTGCAACCAAGACAGATCGC 607
Query 518 TATATGGTTCCAAAA-CAGAAGAGCTCGATCTAAAACCAAGCAGCTTGAGAAAGACTATG 576
|| ||||| ||||| | |||||||||| | ||||| |||||||| |||||||| ||||
Sbjct 608 GATTTGGTTTCAAAATC-GAAGAGCTCGTTGGAAAACAAAGCAGCTAGAGAAAGATTATG 666
Query 577 ACA-TGCTTAAGCGTCAATTCGAGAGTCTCAGAGATGAAAATGAAGTTCTTCAAACTCAA 635
| | | ||||| || || || || | || | || ||||||||| |||||||||||||
Sbjct 667 ATACT-CTTAAACGACAGTTTGATACACTTAAAGCTGAAAATGATCTTCTTCAAACTCAT 725
Query 636 AATCA-AAAGCTTCAAGCTCAGGTAATGGCATTGAAAATCAGAGAACCAATAGAATCAAT 694
||||| ||| || |||||| || |||||| ||| |||| |||||||| || |||||||||
Sbjct 726 AATCAGAAA-CTCCAAGCTGAGATAATGGGATTAAAAAACAGAGAACAAACAGAATCAAT 784
Query 695 CAATCTGAACAAAGAAACAGAAGGATCATGTAGTGACAGAAGTGAGAACATTTC 748
||||| ||||||||||| |||||||| || ||| |||||||||| |||| |||
Sbjct 785 AAATCTAAACAAAGAAACTGAAGGATCTTGCAGTAACAGAAGTGATAACAGTTC 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57479624025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5