BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472704
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26945.1 | Symbols: KDR | basic helix-loop-helix (bHLH) DNA-... 994 0.0
> AT1G26945.1 | Symbols: KDR | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:9351454-9352761 FORWARD
LENGTH=689
Length=689
Score = 994 bits (538), Expect = 0.0
Identities = 648/694 (93%), Gaps = 35/694 (5%)
Strand=Plus/Plus
Query 1 AACACCTtcttctccactctcattctctc--tctgacacattaactacttatccttcttg 58
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AACACCTTCTTCTCCACTCTCATTCTCTCTTTCTGACACATTAACTACTTATCCTTCTTG 60
Query 59 cattc-t-tctctctct-----------------c-tATAATATATCAACTAAGAAGATG 98
||||| | ||||||||| | ||||||||||||| |||||||||
Sbjct 61 CATTCTTCTCTCTCTCTACACCCAAACAAACACACTTATAATATATCAAGAAAGAAGATG 120
Query 99 TCTAGCAGAAGATCATCACGTTCAAGACAGTCAGGAAGCTCAAGAATCTCTGACGATCAG 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTAGCAGAAGATCATCACGTTCAAGACAGTCAGGAAGCTCAAGAATCTCTGACGATCAG 180
Query 159 ATTTCCGATCTTGTTTCTAAGCTCCAACACCTCATCCCTGAACTCCGCCGCCGCCGTTCT 218
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 ATTTCCGATCTTGTTTCTAAGCTCCAACACCTCATCCCTGAACTTCGCCGCCGCCGTTCT 240
Query 219 GACAAGGTGTCAGCATCTAAAGTACTACAAGAGACTTGCAACTACATCAGGAACTTACAC 278
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACAAGGTGTCAGCATCTAAGGTACTACAAGAGACTTGCAACTACATCAGGAACTTACAC 300
Query 279 AGAGAGGTTGATGACCTCAGTGACCGTTTGTCGGAACTCTTGGCTTCGACGGATGACAAC 338
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 AGAGAGGTTGATGACCTCAGTGACCGTTTGTCGGAACTCTTGGCTTCGACGGACGACAAC 360
Query 339 AGCGCCGAAGCAGCCATCATTAGGAGCTTGCTTAATTATTAAATCCACATTACTTAATCT 398
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 AGCGCCGAAGCAGCCATCATTAGGAGCTTGCTTAATTATTAAATCCGCATTACTTAATCT 420
Query 399 GAGAGCTATTAATCATCCATTTCCGGCCACCAAATTTATCTTATTATATATGGGTATC-T 457
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 421 GAGAGCTATTAATCATCCGTTTCCGGCCACCAAATTTATCTTATTAT----GGGTATCGT 476
Query 458 --GTTTACTTCTACATCATATATTATGAGATATAGCTAGGGTTTCGGGTCATTGTTAGGC 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTGTTTACTTCTACATCATATATTATGAGATATAGCTAGGGTTTCGGGTCATTGTTAGGC 536
Query 516 CAACTCatatatttatatttaatatatggttatgtatgtatttatatatgcatgttaatt 575
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 537 CAACTCATATATTTATATTTAATATATGGTTATGTATGTATGTAT----GCATGTTAATT 592
Query 576 gtatgtGAGGGTCCAGACCTGGCGTATAGTAGCCTGT--ATCATGAGATCCTCTAATATT 633
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 593 GTATCTGAGGGTCCAGACCTGGCGTATAGTAGCCTGTGTATCATGAGATCCTCTAATATT 652
Query 634 TATGATTAATGACACAGTTCGTTTCCTTTTTTAC 667
||||||||||||||| || |||||||||||||||
Sbjct 653 TATGATTAATGACACGGTCCGTTTCCTTTTTTAC 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32250322374
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5