BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472705
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26940.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 1496 0.0
> AT1G26940.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr1:9343126-9345145 FORWARD
LENGTH=931
Length=931
Score = 1496 bits (810), Expect = 0.0
Identities = 887/924 (96%), Gaps = 5/924 (1%)
Strand=Plus/Plus
Query 2 TTCTCTGCCGGAGTTGACTTCAAAGTCTCTTTGATCAGATCAGCGCCAACTTCTAAACGC 61
||||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct 6 TTCTCTGCCGGTGTTGACTTCAAACTCTCTTTGATTAGATCGGCGCCAACTTCTAAACGC 65
Query 62 AAATGGGAAACAAGAGAATCTTGGTCGTGGGTTTGGTTTGTTTAGCCCTTGTCTCCATTG 121
||||||||| || ||||| |||| || ||||||||| |||||||||| ||||||||||||
Sbjct 66 AAATGGGAATCACGAGAAACTTGATCCTGGGTTTGGCTTGTTTAGCCTTTGTCTCCATTG 125
Query 122 TTAAAGCTCTGTCTCATGAACCAGAACTTGGTTCGGCTCGTGTCGTCTTCCAGACTAGTT 181
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 126 CTAAAGCTCTGCCTCATGAACCAGAACTTGGCTCGGCTCGTGTCGTCTTCCAGACTAGTT 185
Query 182 ATGGAGATATCGAATTCGGGTTCTATCCCACTGTTGCACCCAAGACAGTGGACCATATCT 241
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 186 ATGGAGATATCGAATTTGGGTTCTATCCCACTGTGGCACCCAAGACAGTGGATCACATCT 245
Query 242 TCAAGCTTGTTCGTTTAGGAGGCTACAACACTAATCATTTCTTCAGGGTTGATAAAGGTT 301
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 246 TCAAGCTTGTTCGTTTAGGAGGATACAACACTAATCATTTCTTCAGGGTTGATAAAGGTT 305
Query 302 TTGTTGCTCAAGTTGCGGATGTGGCGAGTGGACGATCAGCTCCAATGAATGAGGATCAAA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 306 TTGTTGCTCAAGTTGCGGATGTGGCGAGTGGACGATCAGCTCCAATGAATGAGGAGCAAA 365
Query 362 GGAAAGAAGCTGAGAAGAAAATTGTGGGAGAGTTCAGTGATGTTAAGCATGTGAGAGGTA 421
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 366 GGAAAGAAGCTGAGAAGAAAATTGTGGGAGAGTTCAGTGATGTTAAGCATGTCAGAGGTA 425
Query 422 TTCTTTCCATGGGAAGATATGACGATCCAAACAGCGCACAATCTTCATTTTCGATGCTTC 481
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 426 CTCTTTCCATGGGAAGATATGACGATCCAAACAGTGCACAATCTTCATTTTCGATGCTTC 485
Query 482 TTGGCAATGCTCCTCATCTTGATCGCCAGTATGCTGTGTTTGGAAAAGTTACTAAAGGAG 541
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 486 TTGGCAATGCTCCTCATCTTGATCGCCAGTATGCTGTGTTTGGTAAAGTTACTAAAGGAG 545
Query 542 ATGAAACATTGAGTAAGCTAGAAGAAGTTCCCACTCGCCGCGAGGGGATTTTTGTTATGC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 ATGAAACATTGAGTAAGCTAGAAGAAGTTCCCACTCGCCGCGAGGGGATTTTTGTTATGC 605
Query 602 CGACGGAGCGGATCACAATTTTGTCGACATACTATTATGACACTAAAATGGAGAGCTGTG 661
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 606 CGACGGAGCGGATCACGATTTTGTCGACATACTATTACGACACTAAAATGGAGAGCTGTG 665
Query 662 AAGAAGAAAGATCTGTCCTGAGAAGAAGGCTTCAAGCATCTTTTGTGGAGGTCGAAAGAC 721
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 666 AAGAAGAGAGATCTGTCCTGAAAAGAAGGCTTCAAGCATCTTTTGTGGAGGTCGAAAGAC 725
Query 722 AGAGAATGAAGTGCTTCCCGTGAATGAAGTTAACACATAAGAAACTGTTCAACAAAAGCC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AGAGAATGAAGTGCTTCCCGTGAATGAAGTTAACACATAAGAAACTGTTCAACAAAAGCC 785
Query 782 TTAAA-CACCAGGGAACACAAAGGTAAATGTATGTCTAGTAAAAAA-CTCAGAATCCTAG 839
||||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 786 TTAAAACGCCAGGGAACACAAAGGTAAATGTATGTCTAGTAAAAAAACTCAGAATGCTAG 845
Query 840 ACAGTGTTTTGAGTG-TTTATCAGTGAGAGAGATTGTAGTTAACAGTGTAAAACAGTTTG 898
||||| || |||||| |||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 846 ACAGT-TTATGAGTGGTTTATCAGTGTGAGAGATTGTAGTTAACAGTGTAAA-CAGTTTG 903
Query 899 AGACATTGAATCATGGATTGTTTC 922
||||||||||||||||||||||||
Sbjct 904 AGACATTGAATCATGGATTGTTTC 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5