BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472706
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26930.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2255 0.0
> AT1G26930.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:9336057-9337786 REVERSE LENGTH=1547
Length=1547
Score = 2255 bits (1221), Expect = 0.0
Identities = 1353/1416 (96%), Gaps = 11/1416 (1%)
Strand=Plus/Plus
Query 1 AGGAGCTTAAACCTTAAGATTTCAAG-AAATGGAATCGATTTTAAGCTTCTTCTGGGTTA 59
||||||||||||||||||||||| || |||||| |||||||||||||||| |||||||||
Sbjct 1 AGGAGCTTAAACCTTAAGATTTC-AGCAAATGGGATCGATTTTAAGCTTCGTCTGGGTTA 59
Query 60 AAAGCTTGGATCCAATCTGAAGACAGAACAAAGTTTCTTGCTTTTGATTCTTTGCCCATT 119
||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 60 AAAGCTTGGATCCTATCTGAAGACAGAACAAAGGTTCTTGCTTTTGATTCATTGCCCATT 119
Query 120 TTGAGAAGATGTTCGAAGGAGGTCGACCTCGTGATTCTTGTCTAGTTTCAACACTTTTCA 179
||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 TTGAGAAGATGTTCG-A--AGGTCGTCCTCGTGATTCTTGTCTAGTTTCAACACTTTTCA 176
Query 180 CCATGCCAAGCCATCAAGAAACGAAATGGAGCTTTTTGGTTTCTGGTAAACGATCTTTTC 239
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 177 CCATGCCAAGCCATAAAGAAACGAAATGGAGCTTTTTGGTTTCTGGGAAACGATCTTTTC 236
Query 240 TCAACAACGATGAGTCTGATCTTCACTTCAAGAAGATGTACAAGC-T-C-GCTGGTTCAA 296
||||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||
Sbjct 237 TCAACAACGATGAGTCTGATCTTCACTTCAAGAAGATGTACAAGCTTACTACTGATTCAA 296
Query 297 GTGGAGGAGGAGGAGACAATGGATCTTCTTCAGATTCAGGAACACTTATCCCAGGGATGA 356
|| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GT-GA--AGGAGAAGACAATGGATCTTCTTCAGATTCAGGAACACTTATCCCAGGGATGA 353
Query 357 ACAAAGATGATTCGTTAAGCTGTTTGATTCGTTGCGCTAGAGCTGATTACTGCTCCATTG 416
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 354 ACAGAGATGATTCGTTAAGCTGTTTGATTCGTTGCTCTAGAGCTGATTACTGCTCCATTG 413
Query 417 CTTCTGTGAATCGGAGCTTACGTTCTTTGATTCGAAGTGGAGAGATTTATAGACTCAGGA 476
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CTTCTGTGAATCGTAGCTTACGTTCTTTGATTCGAAGTGGAGAGATTTATAGACTCAGGA 473
Query 477 GGCTACAAGGGACGCTTGAGCATTGGGTTTATTTCTCGTGCCATCTCAATGAATGGGAAG 536
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GACTACAAGGGACGCTTGAGCATTGGGTTTATTTCTCGTGCCATCTCAATGAATGGGAAG 533
Query 537 CTTTTGATCCGAGGTCGAAACGGTGGATGCATTTGCCGAGTATGCCACAGAACGAGTGTT 596
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CTTTTGATCCAAGATCGAAACGGTGGATGCATTTGCCGAGTATGCCACAGAACGAGTGTT 593
Query 597 TCAGGTACGCAGATAAAGAGTCTTTGGCTGTAGGAACTGATTTGCTTGTGTTTGGTTGGG 656
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TCAGGTATGCAGATAAAGAGTCTTTGGCTGTAGGAACTGATTTGCTTGTGTTTGGTTGGG 653
Query 657 AAGTGAGTTCTTATGTAATCTATAGATACAGTCTTTTGACCAACTCTTGGTCTACTGGGA 716
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 654 AAGTGAGTTCTTACGTAATCTATAGATACAGTCTTTTGACTAACTCTTGGTCTACTGCGA 713
Query 717 AGAGTATGAACATGCCTAGATGTTTGTTTGGCTCTGCTAGTTATGGAGAGATTGCGGTTT 776
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 714 AGAGTATGAACATGCCTAGATGTTTGTTTGGCTCTGCTAGTTACGGAGAGATTGCGGTTT 773
Query 777 TAGCTGGTGGTTGCGATTCTAATGGTAGGATTCTTGATACTGCGGAGTTGTATAACTATG 836
|||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 774 TAGCGGGTGGTTGCGATTCGAGCGGTAGGATTCTTGATACTGCGGAGTTGTATAACTACG 833
Query 837 AGGATCAGACTTGGTCGGTGTTACCGGGGATGAACAAGAGGAGGAAAATGTGTTCCGGTG 896
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 834 AGGATCAGACTTGGTTGGTGTTACCCGGGATGAACAAGAGGAGGAAAATGTGTTCCGGTG 893
Query 897 TGTTTATGAATGGGAAGTTTTATGTGATTGGTGGGATTGGTGTTGGGGAAGGGAATGAGC 956
|||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 894 TGTTTATGGATGGGAAGTTTTATGTCATTGGTGGGATTGGTGTTGGGGAAGAGAATGAGC 953
Query 957 CAAAGGTTTTGACTTGTGGGGAAGAGTTTGATTTGAAGACTAGGAAATGGACAGAGATTC 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 954 CAAAGGTTTTGACTTGTGGGGAAGAGTTTGATTTGAAGACTAGGAAATGGACAGAGATCC 1013
Query 1017 CTGAGATGTCGCCACCGCGGTCTAACCAGGGGAACGGAATGTCTGCAGCTGCGATGGCTC 1076
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CTGAGATGTCACCACCGCGGTCTAACCAGGGGAACGGAATGTCTGCAGCTGCGATGGCTC 1073
Query 1077 CACCGCTTGTAGCGGTTGTGAATGATCAGCTTTACGCGGCTGATCATGCTGGTATGGCTG 1136
||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |
Sbjct 1074 CACCGCTTGTAGCGGTTGTGAATGACCAGCTTTATGCAGCTGATCATGCTGGTATGGCGG 1133
Query 1137 TTAGGAGGTATGATAAGGAGAAACGGGTTTGGAATAAAGTTGGGAACTTGCCTGAGCAAG 1196
|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1134 TTAGAAGGTATGATAAAGAGAAACGTGTTTGGAATAAAGTTGGGAACTTGCCTGAGCAAG 1193
Query 1197 CAGGTTCAATGAACGGTTGGGGTTTAGCGTTTAGAGCTTGTGGGGATCGGGTTATAGTGA 1256
| ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1194 CGGGTTCGATGAACGGTTGGGGTTTAGCTTTTAGAGCTTGTGGGGATCGGATTATAGTGA 1253
Query 1257 TTGGTGGACCAAAGGCTCCAGGTGAAGGATTCATTGAGCTTAACTCATGGGTACCAAGTG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TTGGTGGACCAAAGGCTCCAGGTGAAGGATTCATTGAGCTTAACTCATGGGTACCAAGTG 1313
Query 1317 ATGCAACACCGGAGTGGCATTTACTCGGCAAGAAACAGTCGGTTAATTTCGTGTATAATT 1376
| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1314 TTACAACACCGGAATGGCATTTACTAGGCAAGAAACAGTCGGTTAATTTCGTGTATAATT 1373
Query 1377 GCGCGGTGATGAGCTGTTGAAGAAGTGAAATAAAAC 1412
|||| |||||||| ||||||| ||||||||||||||
Sbjct 1374 GCGCCGTGATGAGTTGTTGAATAAGTGAAATAAAAC 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69577955370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5