BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472707
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26920.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 952 0.0
> AT1G26920.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G69760.1);
Has 47 Blast hits to 47 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 34; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:9329512-9330398
FORWARD LENGTH=887
Length=887
Score = 952 bits (515), Expect = 0.0
Identities = 716/808 (89%), Gaps = 34/808 (4%)
Strand=Plus/Plus
Query 1 ATCTCTCTTATCACCCTCACATTTTTCCCTCTCTAACGTTACTAAAAGC-TCCTCTCTCT 59
||||| ||||||||||||||| |||| |||||||||||| |||||| | ||||||||||
Sbjct 1 ATCTCGCTTATCACCCTCACA-ATTTCTCTCTCTAACGTTTCTAAAA-CATCCTCTCTCT 58
Query 60 CTTTCTCTTGAATAACATGGCTGAAATATCTGATGTATCGCCATTGAAGCGTTACAGAGA 119
|| |||| | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 59 CTCTCTC-T-CATAACATGGCTGAAACATCTGATGTATCGCCATTGAAGCGTTACAGAGA 116
Query 120 ACAAGAAACCCTAG-CAGAAGAAGAAAC-AACCAAACGACAAAAGCCCGCTTCGTCATCA 177
|||||||||||||| | || |||||||| || ||||||||||||||| |||||||||||
Sbjct 117 ACAAGAAACCCTAGTC-GAGGAAGAAACGAA-CAAACGACAAAAGCCAACTTCGTCATCA 174
Query 178 TCTTCTTCCTCTTACAACCAAATTCTATGTCTCCTCAACGATTCAGACGAACAAAACCAA 237
|| ||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 175 TCCTCTGCCTCTTACAACCAAATTCTCTGTCTTCTCAACGATTCAGACGAACAAAACCAA 234
Query 238 CACAACAATGACCTAACTTCCTTTATAAACGCTCTTCAGCAAGAAATCTCATCAGATGAC 297
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 235 CACAACAATGACCTAACTTCCTTCATAAACGCTCTTCAGCAAGAAATATCATCGGATGAC 294
Query 298 CAAAACGCCGTCGTTTCCGAAACCAT-CAACGTCGAAGACTCGTCGTCATCGTCGTGCGT 356
||| ||||||||||||| |||||| | ||||||||||||||||| | || || || ||
Sbjct 295 CAATACGCCGTCGTTTCAGAAACC-TCCAACGTCGAAGACTCGT--T-TTCTTCATGTGT 350
Query 357 TTCCTCGAAA-GAAGAAGATGTCGAAGATGACAACAAGGAGAAAGTGATGCAGCATCTTT 415
|||||| ||| |||||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 351 TTCCTC-AAAGGAAGAAGAAGTGGAAGATGACAGCAAGGAGAAAGTGATGCAGCATCTTT 409
Query 416 TGGAAGCTTCCGATGACGAACTTGGGATCCCTCACACAGATTTTGGCGAGAGTAATTATG 475
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 410 TGGAAGCTTCCGATGACGAACTTGGGATCCCTAACACAGATTTTGGCGAGAGTAATTATG 469
Query 476 AAAAGACTAATGA-GAGTTACGTTTATGGAGATAGCTTGTTAGATGGGTTTGGTGATGCG 534
||||| ||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 470 AAAAGGCTAATGACG-GTTACGTTTATGGAGATAGTTTGTTAGATGGGTTTGGTGATGCG 528
Query 535 TTTTGGGAGCTTGAAGACGAAGCTGCTAATTATTACACGTTGCTGCAGTCTGAGCTATTC 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 529 TTTTGGGAGCTTGAAGACGAAGCTGCTAATTATTACACGTTGCTGCAGTCTGAGCTGTTC 588
Query 595 ATGTAGAAACTATCCTAATTAATGGTCAACCaaaaaaaaa-aaaaCGTAAATCTGGAAGA 653
||||||||| ||||||||| ||| || || |||||||||||||||||||
Sbjct 589 ATGTAGAAATTATCCTAATGGTTGGGAAAT-AACTTCTTTTAAAACGTAAATCTGGAAGA 647
Query 654 ATAGGCCAATaa-aaaa-aaaG--TG---G---GTGTCttttttta--a-tatggaaatt 700
|||||||||||| |||| ||| | | |||||||||||| | ||||||| ||
Sbjct 648 ATAGGCCAATAACAAAACAAAACATAAAAGATTGTGTCTTTTTTTTTTAGTATGGAAGTT 707
Query 701 aatttcattttttcaagacacatttcttttgtttttcCGGAGCG-AGGAAAGATCATTTT 759
|||||||||||| ||| |||||||||||||||||| ||||| | ||||||||||||
Sbjct 708 CATTTCATTTTTTTAAGGCACATTTCTTTTGTTTTTGTGGAGCTTACAAAAGATCATTTT 767
Query 760 AATTGATTGATTAATTTGTAGTAAGGCA 787
|||||||||| |||||||||| ||||||
Sbjct 768 AATTGATTGAGTAATTTGTAGCAAGGCA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38278420014
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5