BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472711 Length=1026 Score E Sequences producing significant alignments: (Bits) Value AT1G26840.1 | Symbols: ORC6, ATORC6 | origin recognition comple... 1563 0.0 > AT1G26840.1 | Symbols: ORC6, ATORC6 | origin recognition complex protein 6 | chr1:9298751-9300699 FORWARD LENGTH=1022 Length=1022 Score = 1563 bits (846), Expect = 0.0 Identities = 968/1026 (94%), Gaps = 11/1026 (1%) Strand=Plus/Plus Query 3 aaaaaaTCTCTCACAGTGACTGACTTTGGTTCTTTATCTT-TAACAATCGCCGGAAAATT 61 |||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||| Sbjct 6 AAAAAATCTCTCACAGTGTCTGACTTTGGTTCTTTGTCTTGTAACAATCGCCGGAAAATT 65 Query 62 AAGGATATGGATATCTCCGACATAGCTAGGAAACTTAGTCTCGATAACAACAAGCTTTTA 121 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 66 AAGGATATGGATATCTCCGACATAGGTAGGAAACTTAGTCTCGATAACAACAAGCTTTTA 125 Query 122 ATCCGAAAAGCTGCAGAGATCCGCCGTCTTTGCGATGCTCAGTTCGATTCATCCATCATC 181 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 126 ATCAGAAAAGCTGCAGAGATCCGCCGTCTTTGCGATGCTCAGTTCGATTCATCCATCATC 185 Query 182 GGCGTTGGTGAGATCTGTAAAGCTGTGATATGTCTAGAAATCGCCGCCTCTAGGTTGCAG 241 ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 186 GGCGTTGGTGAGATCTGTAAAGCTGTGATTTGTCTAGAAATCGCCGCCACTAGGTTGCAG 245 Query 242 ATTATATTCGATAGACAAGCAGCGATTAAATTGAGTGGTATGTCGGAAAAGGCTTATTCT 301 |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 246 ATTATATTCGATAGGCAAGCAGCGGTTAAATTGAGTGGTATGTCGGAAAAGGCTTATTCT 305 Query 302 AGATCATTCAATAGTCTCCAAAACGTTATTGGGATCAAGATTAAGCTTAATGTAAGAGAA 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 306 AGATCATTCAATAGTCTCCAAAACGTTATTGGGATCAAGATTAAGCTTAATGTAAGAGAA 365 Query 362 TTGGCGGTTCAGTTTGGTTGTGTTAGAATAATCAAATCTGTGCAAAATGTGTTATCCTCG 421 ||||||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||| Sbjct 366 TTGGCGGTTCAATTTGGCTGTGTTAGGGTAATCAAATCCGTGCAAAATGTGTTATCCTCG 425 Query 422 TATAAGGAGCGGTTTCTTGCGTCACTGCCAGCATCGAGGCGGGCAAATGCTGACTTTACT 481 ||||||||| |||||||||||||||| ||||| ||||| ||||| |||||||| |||||| Sbjct 426 TATAAGGAGAGGTTTCTTGCGTCACTACCAGCGTCGAGACGGGCTAATGCTGATTTTACT 485 Query 482 AGACCTGTATTTACAGCTGCTGCTTTTTATTTGTGCGCTAAAAAGCAGAAGCTTAAGGTA 541 |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 486 AGACCTGTATTTACAGCTGCTGCTTTCTATTTGTGTGCTAAGAAGCAGAAGCTTAAGGTA 545 Query 542 GATAAGCTTAGGCTGATTGAGGTTTGTGGAACATCAGAATCTGAATTCTCTTGTGTCTCA 601 |||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 546 GATAAGCTTAGGTTGATTGAGGTTTGTGGTACATCAGAGTCTGAATTCTCTTGTGTCTCG 605 Query 602 ACCTCTATGACAGATCTTTGCTTTGACTGTGTTGGGATCTCAAAGGAAAAGAAAGATGCA 661 ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 606 ACCTCCATGACAGATCTTTGTTTTGACTGTGTTGGGATCTCTAAGGAAAAGAAAGATGCA 665 Query 662 AAAGACGTGAAAGGAAACCGAGACTTGCTTGATGTGTTACCTGGTAAGAGGAGACTAGAG 721 |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct 666 AAAGACGTTAAAGGAAACAGAGACTTGCTTGATGTGTTACCTGGAAAGAGGAGACTAGAG 725 Query 722 GATGGTGGATATTCATCTGATGATGAGTCTTCATGTTACAAAAGACACAAGAAGATGGAA 781 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 726 GATGGTGGATATTCATCTGGTGATGAGTCTTCATGTTACAAAAGACACAAGAAGATGGAG 785 Query 782 GAGGCTAAGTATGAGGACTGGAAATCTACAGTCGTTAATTCGATCAAGCAGAACCCAGAG 841 |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| Sbjct 786 GAGGCTAAGTATGAGGACTGGAAATCTACAGTCGTTAATTCGATTAAGAAGAATCCAGAG 845 Query 842 AAAGGAACTAAGAGAGTTATACAGGCCAGTCTCAATTTCCCAAAGAAGTCTGAGACAAAA 901 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 846 AAAGGAACTAAGAGAGTTATACAGGCCAGTCTCAATTTCCCAAAGAAATCTGAGACCAAA 905 Query 902 GAGTTGCAAGTTGATTCATAACCTTACACACATTCAGAGACTCAAATCTTGTTCAAGTTA 961 |||||||||||||||||||||| ||||||||||||||||||||| ||| |||| | || Sbjct 906 GAGTTGCAAGTTGATTCATAACATTACACACATTCAGAGACTCAGATCCTGTT-A--TT- 961 Query 962 TTGTTGTTTTCATCATATGAAATATGTGTAAATGACAATTCTTGAAAAGCAATGtttttt 1021 ||||||||||||| || ||| |||||||||||||||||||| ||| ||| |||||| Sbjct 962 --GTTGTTTTCATCACATTTAAT--GTGTAAATGACAATTCTTGATAAG-AATTTTTTTT 1016 Query 1022 t-CCCC 1026 | |||| Sbjct 1017 TTCCCC 1022 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50284381147 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5