BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472711
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26840.1 | Symbols: ORC6, ATORC6 | origin recognition comple... 1563 0.0
> AT1G26840.1 | Symbols: ORC6, ATORC6 | origin recognition complex
protein 6 | chr1:9298751-9300699 FORWARD LENGTH=1022
Length=1022
Score = 1563 bits (846), Expect = 0.0
Identities = 968/1026 (94%), Gaps = 11/1026 (1%)
Strand=Plus/Plus
Query 3 aaaaaaTCTCTCACAGTGACTGACTTTGGTTCTTTATCTT-TAACAATCGCCGGAAAATT 61
|||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||
Sbjct 6 AAAAAATCTCTCACAGTGTCTGACTTTGGTTCTTTGTCTTGTAACAATCGCCGGAAAATT 65
Query 62 AAGGATATGGATATCTCCGACATAGCTAGGAAACTTAGTCTCGATAACAACAAGCTTTTA 121
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 66 AAGGATATGGATATCTCCGACATAGGTAGGAAACTTAGTCTCGATAACAACAAGCTTTTA 125
Query 122 ATCCGAAAAGCTGCAGAGATCCGCCGTCTTTGCGATGCTCAGTTCGATTCATCCATCATC 181
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 ATCAGAAAAGCTGCAGAGATCCGCCGTCTTTGCGATGCTCAGTTCGATTCATCCATCATC 185
Query 182 GGCGTTGGTGAGATCTGTAAAGCTGTGATATGTCTAGAAATCGCCGCCTCTAGGTTGCAG 241
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 186 GGCGTTGGTGAGATCTGTAAAGCTGTGATTTGTCTAGAAATCGCCGCCACTAGGTTGCAG 245
Query 242 ATTATATTCGATAGACAAGCAGCGATTAAATTGAGTGGTATGTCGGAAAAGGCTTATTCT 301
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 246 ATTATATTCGATAGGCAAGCAGCGGTTAAATTGAGTGGTATGTCGGAAAAGGCTTATTCT 305
Query 302 AGATCATTCAATAGTCTCCAAAACGTTATTGGGATCAAGATTAAGCTTAATGTAAGAGAA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 AGATCATTCAATAGTCTCCAAAACGTTATTGGGATCAAGATTAAGCTTAATGTAAGAGAA 365
Query 362 TTGGCGGTTCAGTTTGGTTGTGTTAGAATAATCAAATCTGTGCAAAATGTGTTATCCTCG 421
||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct 366 TTGGCGGTTCAATTTGGCTGTGTTAGGGTAATCAAATCCGTGCAAAATGTGTTATCCTCG 425
Query 422 TATAAGGAGCGGTTTCTTGCGTCACTGCCAGCATCGAGGCGGGCAAATGCTGACTTTACT 481
||||||||| |||||||||||||||| ||||| ||||| ||||| |||||||| ||||||
Sbjct 426 TATAAGGAGAGGTTTCTTGCGTCACTACCAGCGTCGAGACGGGCTAATGCTGATTTTACT 485
Query 482 AGACCTGTATTTACAGCTGCTGCTTTTTATTTGTGCGCTAAAAAGCAGAAGCTTAAGGTA 541
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 486 AGACCTGTATTTACAGCTGCTGCTTTCTATTTGTGTGCTAAGAAGCAGAAGCTTAAGGTA 545
Query 542 GATAAGCTTAGGCTGATTGAGGTTTGTGGAACATCAGAATCTGAATTCTCTTGTGTCTCA 601
|||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 546 GATAAGCTTAGGTTGATTGAGGTTTGTGGTACATCAGAGTCTGAATTCTCTTGTGTCTCG 605
Query 602 ACCTCTATGACAGATCTTTGCTTTGACTGTGTTGGGATCTCAAAGGAAAAGAAAGATGCA 661
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 606 ACCTCCATGACAGATCTTTGTTTTGACTGTGTTGGGATCTCTAAGGAAAAGAAAGATGCA 665
Query 662 AAAGACGTGAAAGGAAACCGAGACTTGCTTGATGTGTTACCTGGTAAGAGGAGACTAGAG 721
|||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 666 AAAGACGTTAAAGGAAACAGAGACTTGCTTGATGTGTTACCTGGAAAGAGGAGACTAGAG 725
Query 722 GATGGTGGATATTCATCTGATGATGAGTCTTCATGTTACAAAAGACACAAGAAGATGGAA 781
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 726 GATGGTGGATATTCATCTGGTGATGAGTCTTCATGTTACAAAAGACACAAGAAGATGGAG 785
Query 782 GAGGCTAAGTATGAGGACTGGAAATCTACAGTCGTTAATTCGATCAAGCAGAACCCAGAG 841
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 786 GAGGCTAAGTATGAGGACTGGAAATCTACAGTCGTTAATTCGATTAAGAAGAATCCAGAG 845
Query 842 AAAGGAACTAAGAGAGTTATACAGGCCAGTCTCAATTTCCCAAAGAAGTCTGAGACAAAA 901
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 846 AAAGGAACTAAGAGAGTTATACAGGCCAGTCTCAATTTCCCAAAGAAATCTGAGACCAAA 905
Query 902 GAGTTGCAAGTTGATTCATAACCTTACACACATTCAGAGACTCAAATCTTGTTCAAGTTA 961
|||||||||||||||||||||| ||||||||||||||||||||| ||| |||| | ||
Sbjct 906 GAGTTGCAAGTTGATTCATAACATTACACACATTCAGAGACTCAGATCCTGTT-A--TT- 961
Query 962 TTGTTGTTTTCATCATATGAAATATGTGTAAATGACAATTCTTGAAAAGCAATGtttttt 1021
||||||||||||| || ||| |||||||||||||||||||| ||| ||| ||||||
Sbjct 962 --GTTGTTTTCATCACATTTAAT--GTGTAAATGACAATTCTTGATAAG-AATTTTTTTT 1016
Query 1022 t-CCCC 1026
| ||||
Sbjct 1017 TTCCCC 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5