BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472716
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26880.1 | Symbols: | Ribosomal protein L34e superfamily pr... 1020 0.0
> AT1G26880.1 | Symbols: | Ribosomal protein L34e superfamily
protein | chr1:9315383-9316729 REVERSE LENGTH=668
Length=668
Score = 1020 bits (552), Expect = 0.0
Identities = 584/599 (97%), Gaps = 3/599 (1%)
Strand=Plus/Plus
Query 1 ATATTCTTCGTTCCAAACGAAAACCCTAAAAGAGAAAAGGAGGCGAAAATGGTGCAGCGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATATTCTTCGTTCCAAACGAAAACCCTAAAAGAGAAAAGGAGGCGAAAATGGTGCAGCGT 60
Query 61 CTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAACCAGCACCGTATCGTCAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAACCAGCACCGTATCGTCAAG 120
Query 121 ACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGAGCTAGTGGCCCCAAATGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGAGCTAGTGGCCCCAAATGT 180
Query 181 CCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGGCCCTCTGAATACAAGAGG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGGCCCTCTGAGTACAAGAGG 240
Query 241 TCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATACGGTGGAGTCTTGTCTGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATACGGTGGAGTCTTGTCTGGT 300
Query 301 TCTGCAGTCAGGGAAAGGATTATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAG 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTGCAGTCAGGGAAAGGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAG 360
Query 361 AAAGTGTTGAAACTCCAAAAGGCCAAGGAGAAAGTAGCCCCCAAGGCTTAAGCTTTTTAT 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 361 AAAGTGTTGAAACTCCAAAAGGCTAAGGAGAAAGTAGCCCCCAAGGCTTAAGCTTTT-AT 419
Query 421 GTTTTCTTCTTATCTGTTTTGGGATTATGGCTATGTTCAAGTGATAGGACTTGGTGCAGT 480
||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTTTATTCTTCTCTGTTTTGGAATTATGGCTATGTTCAAGTGATAGGACTTGGTGCAGT 479
Query 481 CATGTGAGAACATCTATGTTACTC-ATCCAATTTTTAAGCTTTGTATTGTGTTTTCGGTT 539
|||||||| ||||||||||||||| | ||||||||||||||||||||| |||| || |||
Sbjct 480 CATGTGAGGACATCTATGTTACTCGA-CCAATTTTTAAGCTTTGTATTCTGTTATCAGTT 538
Query 540 CTTAACTTTGTCGACAATTCTCTTCTCTTCAGTTTTGGTATTGTTGAATTCACCTTTAA 598
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 539 CTTAACTTTGTCGACAATTCTCTTCTCTTCAGTTTTGGAATTGTTGAATTCATCTTTAA 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5