BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472716 Length=598 Score E Sequences producing significant alignments: (Bits) Value AT1G26880.1 | Symbols: | Ribosomal protein L34e superfamily pr... 1020 0.0 > AT1G26880.1 | Symbols: | Ribosomal protein L34e superfamily protein | chr1:9315383-9316729 REVERSE LENGTH=668 Length=668 Score = 1020 bits (552), Expect = 0.0 Identities = 584/599 (97%), Gaps = 3/599 (1%) Strand=Plus/Plus Query 1 ATATTCTTCGTTCCAAACGAAAACCCTAAAAGAGAAAAGGAGGCGAAAATGGTGCAGCGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATATTCTTCGTTCCAAACGAAAACCCTAAAAGAGAAAAGGAGGCGAAAATGGTGCAGCGT 60 Query 61 CTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAACCAGCACCGTATCGTCAAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTGTTTACCGGTCGCGACACAGCTACGCCACCAAATCGAACCAGCACCGTATCGTCAAG 120 Query 121 ACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGAGCTAGTGGCCCCAAATGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACTCCAGGAGGTAAATTGGTGTATCAAACCACAAAGAAGAGAGCTAGTGGCCCCAAATGT 180 Query 181 CCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGGCCCTCTGAATACAAGAGG 240 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 181 CCTGTTACTGGCAAGCGTATTCAAGGAATCCCTCACTTGAGGCCCTCTGAGTACAAGAGG 240 Query 241 TCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATACGGTGGAGTCTTGTCTGGT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCAAGATTATCAAGAAACAGGAGGACTGTAAACCGAGCATACGGTGGAGTCTTGTCTGGT 300 Query 301 TCTGCAGTCAGGGAAAGGATTATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAG 360 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCTGCAGTCAGGGAAAGGATCATTCGGGCATTCCTTGTCGAAGAGCAAAAGATTGTGAAG 360 Query 361 AAAGTGTTGAAACTCCAAAAGGCCAAGGAGAAAGTAGCCCCCAAGGCTTAAGCTTTTTAT 420 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 361 AAAGTGTTGAAACTCCAAAAGGCTAAGGAGAAAGTAGCCCCCAAGGCTTAAGCTTTT-AT 419 Query 421 GTTTTCTTCTTATCTGTTTTGGGATTATGGCTATGTTCAAGTGATAGGACTTGGTGCAGT 480 ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 420 GTTTTATTCTTCTCTGTTTTGGAATTATGGCTATGTTCAAGTGATAGGACTTGGTGCAGT 479 Query 481 CATGTGAGAACATCTATGTTACTC-ATCCAATTTTTAAGCTTTGTATTGTGTTTTCGGTT 539 |||||||| ||||||||||||||| | ||||||||||||||||||||| |||| || ||| Sbjct 480 CATGTGAGGACATCTATGTTACTCGA-CCAATTTTTAAGCTTTGTATTCTGTTATCAGTT 538 Query 540 CTTAACTTTGTCGACAATTCTCTTCTCTTCAGTTTTGGTATTGTTGAATTCACCTTTAA 598 |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 539 CTTAACTTTGTCGACAATTCTCTTCTCTTCAGTTTTGGAATTGTTGAATTCATCTTTAA 597 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28784166231 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5