BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472718 Length=927 Score E Sequences producing significant alignments: (Bits) Value AT1G26820.1 | Symbols: RNS3 | ribonuclease 3 | chr1:9292446-929... 1424 0.0 > AT1G26820.1 | Symbols: RNS3 | ribonuclease 3 | chr1:9292446-9293784 REVERSE LENGTH=1045 Length=1045 Score = 1424 bits (771), Expect = 0.0 Identities = 879/928 (95%), Gaps = 20/928 (2%) Strand=Plus/Plus Query 1 CATCCTTCATTGGTTTTCGACAAATTTGATTCCCACAAATTATTTGATATCTTGAGGAAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 CATCCTTCATTGGTTTTCGACAAATTTGATTCCCACAAATTATTTGATATCTTGAGGAAA 63 Query 61 TGAAATTCTTTATTTGTCTTCTAGCGTTACAACAACTCTACGTACAAAGTGTCGCCCAGG 120 |||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||| | Sbjct 64 TGAAATTCTTCATTTTTATTCTAGCGTTACAACAACTCTACGTACAAAGTTTCGCCCAAG 123 Query 121 ATTTCGATTTCTTCTACTTCGTTTTACAGTGGCCTGGAGCGTATTGTGATTCAAGACATA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 124 ATTTCGATTTCTTCTACTTCGTTTTACAGTGGCCTGGAGCGTATTGTGATTCAAGACATA 183 Query 181 GTTGTTGCTACCCGA-AAACCGGTAAACCAGCTGCGGATTTTGGAATTCACGGTCTTTGG 239 |||||||||| || | ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 184 GTTGTTGCTATCC-ACAAACCGGTAAACCAGCTGCAGATTTTGGAATTCACGGTCTTTGG 242 Query 240 CCTAACTACAAAACCGGTGGATGGCCGCAAAATTGTAATCCTGACAGTCAATTTGATGAT 299 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 243 CCTAACTACAAAACCGGTGGATGGCCGCAAAATTGTAATCCTGACAGTCGATTTGATGAT 302 Query 300 TTACGGGTGTCTGATCTGATGAGCGATTTACAAAGAGAATGGCCAACGTTGTCGTGTCCG 359 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 TTACGGGTTTCTGATCTGATGAGCGATTTACAAAGAGAATGGCCAACGTTGTCGTGTCCG 362 Query 360 AGCAATGATGGTATGAAGTTTTGGACACATGAGTGGGAGAAACACGGCACATGCGCTGAG 419 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 363 AGCAATGATGGTATGAAGTTTTGGACACATGAGTGGGAGAAACACGGTACGTGCGCTGAG 422 Query 420 TCTGAGCTTGACCAACACGATTACTTTGAAGCCGGTCTCAAGCTCAAACAGAAAGCTAAT 479 || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 423 TCCGAGCTTGACCAACACGATTACTTCGAAGCTGGTCTCAAGCTCAAACAGAAAGCTAAT 482 Query 480 CTCCTTCATGCCCTTACCAATGCCGGGATCAAACCGGATGATAAATTTTATGAAATGAAA 539 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 483 CTCCTTCATGCCCTTACCAATGCTGGGATCAAACCGGATGATAAATTTTATGAAATGAAA 542 Query 540 GATATTGAGAATACGATCAAAGAAGTAGTTGGATTTGCTCCAGGCATTGAATGTAACAAA 599 ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| Sbjct 543 GATATTGAGAATACGATCAAACAAGTAGTTGGGTTTGCTCCGGGCATTGAATGTAACAAA 602 Query 600 GATTCGTCACATAATAGCCAACTCTATCAGATTTATTTATGTGTTGACACTTCGGCTTCC 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 603 GATTCGTCACATAATAGCCAACTCTATCAGATTTATTTATGTGTTGACACTTCGGCCTCC 662 Query 660 AAATTCATCAACTGTCCTGTTATGCCGCATGGTCGATGCGACTCTCGAGTTCAATTTCCC 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 AAATTCATCAACTGTCCTGTTATGCCGCATGGTCGATGCGACTCTCGAGTTCAATTTCCC 722 Query 720 AAGTTCTAAATTTTATGGCTGCATTTTTTCTATGTATTTACaaaaaaaCATCATACTTAT 779 |||||||||||||||||||| ||||||||||||||||||||| || ||| ||| Sbjct 723 AAGTTCTAAATTTTATGGCTACATTTTTTCTATGTATTTACAT-------TC-TACCTAT 774 Query 780 TAATTTTTATTTGTGTTTCTTGCAACATTTATAAGTTGTAATAAACAGTGTATATATAAT 839 ||||||||||||||||||||||||| ||||| |||||||||||||||||||| || | Sbjct 775 TAATTTTTATTTGTGTTTCTTGCAAAATTTA---GTTGTAATAAACAGTGTATA-AT--T 828 Query 840 TGGATGATACCCTTGATTTGCGTAGTAAAAAGATGACAAAGGTTACTAATTTGTTTCTAG 899 ||| ||||||| |||||||| | |||||||||||| ||||||||||||||||||||||| Sbjct 829 -GGACGATACCCGTGATTTGCATGGTAAAAAGATGATAAAGGTTACTAATTTGTTTCTAG 887 Query 900 TTAAAATAGTACTAATTTACAGTTTTCT 927 |||||||| ||||||||||||| ||| Sbjct 888 TTAAAATA---CTAATTTACAGTTCTCT 912 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45311200594 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5