BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472718
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26820.1 | Symbols: RNS3 | ribonuclease 3 | chr1:9292446-929... 1424 0.0
> AT1G26820.1 | Symbols: RNS3 | ribonuclease 3 | chr1:9292446-9293784
REVERSE LENGTH=1045
Length=1045
Score = 1424 bits (771), Expect = 0.0
Identities = 879/928 (95%), Gaps = 20/928 (2%)
Strand=Plus/Plus
Query 1 CATCCTTCATTGGTTTTCGACAAATTTGATTCCCACAAATTATTTGATATCTTGAGGAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CATCCTTCATTGGTTTTCGACAAATTTGATTCCCACAAATTATTTGATATCTTGAGGAAA 63
Query 61 TGAAATTCTTTATTTGTCTTCTAGCGTTACAACAACTCTACGTACAAAGTGTCGCCCAGG 120
|||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||| |
Sbjct 64 TGAAATTCTTCATTTTTATTCTAGCGTTACAACAACTCTACGTACAAAGTTTCGCCCAAG 123
Query 121 ATTTCGATTTCTTCTACTTCGTTTTACAGTGGCCTGGAGCGTATTGTGATTCAAGACATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 ATTTCGATTTCTTCTACTTCGTTTTACAGTGGCCTGGAGCGTATTGTGATTCAAGACATA 183
Query 181 GTTGTTGCTACCCGA-AAACCGGTAAACCAGCTGCGGATTTTGGAATTCACGGTCTTTGG 239
|||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 184 GTTGTTGCTATCC-ACAAACCGGTAAACCAGCTGCAGATTTTGGAATTCACGGTCTTTGG 242
Query 240 CCTAACTACAAAACCGGTGGATGGCCGCAAAATTGTAATCCTGACAGTCAATTTGATGAT 299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 243 CCTAACTACAAAACCGGTGGATGGCCGCAAAATTGTAATCCTGACAGTCGATTTGATGAT 302
Query 300 TTACGGGTGTCTGATCTGATGAGCGATTTACAAAGAGAATGGCCAACGTTGTCGTGTCCG 359
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TTACGGGTTTCTGATCTGATGAGCGATTTACAAAGAGAATGGCCAACGTTGTCGTGTCCG 362
Query 360 AGCAATGATGGTATGAAGTTTTGGACACATGAGTGGGAGAAACACGGCACATGCGCTGAG 419
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 363 AGCAATGATGGTATGAAGTTTTGGACACATGAGTGGGAGAAACACGGTACGTGCGCTGAG 422
Query 420 TCTGAGCTTGACCAACACGATTACTTTGAAGCCGGTCTCAAGCTCAAACAGAAAGCTAAT 479
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 423 TCCGAGCTTGACCAACACGATTACTTCGAAGCTGGTCTCAAGCTCAAACAGAAAGCTAAT 482
Query 480 CTCCTTCATGCCCTTACCAATGCCGGGATCAAACCGGATGATAAATTTTATGAAATGAAA 539
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 483 CTCCTTCATGCCCTTACCAATGCTGGGATCAAACCGGATGATAAATTTTATGAAATGAAA 542
Query 540 GATATTGAGAATACGATCAAAGAAGTAGTTGGATTTGCTCCAGGCATTGAATGTAACAAA 599
||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 543 GATATTGAGAATACGATCAAACAAGTAGTTGGGTTTGCTCCGGGCATTGAATGTAACAAA 602
Query 600 GATTCGTCACATAATAGCCAACTCTATCAGATTTATTTATGTGTTGACACTTCGGCTTCC 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 603 GATTCGTCACATAATAGCCAACTCTATCAGATTTATTTATGTGTTGACACTTCGGCCTCC 662
Query 660 AAATTCATCAACTGTCCTGTTATGCCGCATGGTCGATGCGACTCTCGAGTTCAATTTCCC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 AAATTCATCAACTGTCCTGTTATGCCGCATGGTCGATGCGACTCTCGAGTTCAATTTCCC 722
Query 720 AAGTTCTAAATTTTATGGCTGCATTTTTTCTATGTATTTACaaaaaaaCATCATACTTAT 779
|||||||||||||||||||| ||||||||||||||||||||| || ||| |||
Sbjct 723 AAGTTCTAAATTTTATGGCTACATTTTTTCTATGTATTTACAT-------TC-TACCTAT 774
Query 780 TAATTTTTATTTGTGTTTCTTGCAACATTTATAAGTTGTAATAAACAGTGTATATATAAT 839
||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |
Sbjct 775 TAATTTTTATTTGTGTTTCTTGCAAAATTTA---GTTGTAATAAACAGTGTATA-AT--T 828
Query 840 TGGATGATACCCTTGATTTGCGTAGTAAAAAGATGACAAAGGTTACTAATTTGTTTCTAG 899
||| ||||||| |||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 829 -GGACGATACCCGTGATTTGCATGGTAAAAAGATGATAAAGGTTACTAATTTGTTTCTAG 887
Query 900 TTAAAATAGTACTAATTTACAGTTTTCT 927
|||||||| ||||||||||||| |||
Sbjct 888 TTAAAATA---CTAATTTACAGTTCTCT 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5