BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472719
Length=2389
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26810.1 | Symbols: GALT1 | galactosyltransferase1 | chr1:92... 3496 0.0
> AT1G26810.1 | Symbols: GALT1 | galactosyltransferase1 | chr1:9286643-9289969
REVERSE LENGTH=2443
Length=2443
Score = 3496 bits (1893), Expect = 0.0
Identities = 2259/2429 (93%), Gaps = 51/2429 (2%)
Strand=Plus/Plus
Query 1 AAACCACCTTCGCTTTCTCTGCTGGTGGAAGGTGGTGCTTCGATACTACGACAAAGAGCA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AAACCACCTTCGCTTTCTCTGCTGGTGGAA---GGTGCTTCGATACTACGACAAAGAGCA 57
Query 61 ACAAACTAGTAAATCCTCAGAGATCTGAGCCCCATTTTTACTCGGCTTATCTTTCCGTCA 120
| |||||||||| |||| ||||||||| |||| ||| | || || |||||||||||
Sbjct 58 GCGAACTAGTAAAGCCTCGGAGATCTGAATCCCA-TTTCAATCAGCAAATCTTTCCGTCT 116
Query 121 CTACTTCTCGACATT-CCGGTGTACCGGATTCTGATTCCGGAACGGACATTGCTTCACGT 179
||||||||| || |||||||||||||||||||||||||||| |||||||||| | |
Sbjct 117 CTACTTCTC-TGTTTGCCGGTGTACCGGATTCTGATTCCGGAACAGACATTGCTTAATTT 175
Query 180 TGTTTTCATGTT-TCAGGGATTGATTTACGTTAAACAATATCAACATTCTACTGTAAGAT 238
|| || | | || | ||||||||| | |||||| |||| | ||||| |||||||||||
Sbjct 176 TGCTTCCCT-TTGGCCTGGATTGATTGAAGTTAAAAAATAGCTACATTGTACTGTAAGAT 234
Query 239 TGAATCTTGATGATCTCGCCGCCCGATTTCTCGTTTGAGTGATTTT-GGCTGAT-AAAAA 296
||||| |||||||||||||||| ||||||||||||||||||||||| ||||| | |||||
Sbjct 235 TGAATATTGATGATCTCGCCGCGCGATTTCTCGTTTGAGTGATTTTCGGCTG-TGAAAAA 293
Query 297 TGAAGAGATTTTATGGAGGACTTCTTGTTGTATCAATGTGTATGTTCTTGACAGTGTATA 356
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 294 TGAAGAGATTTTATGGAGGGCTTCTTGTTGTATCAATGTGTATGTTCTTGACGGTGTATA 353
Query 357 GATATGTTGACTTGAAAACTCCTGTTGAAAAGCCTTTTATTACTGCTGCTGCTTCTGTTG 416
||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 354 GATATGTAGACTTGAACACTCCTGTTGAAAAGCCTTATATTACTGCTGCTGCTTCTGTTG 413
Query 417 TTGTTACTCCTAACACCACTCTTCCTATGGAATGGCTGCGGATTACTCTCCCTGACTTTA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTGTTACTCCTAACACCACTCTTCCTATGGAATGGCTGCGGATTACTCTCCCTGACTTTA 473
Query 477 TGAAAGAAGCGAGGAACACTCAAGAAGCGTTATCTGGTGACGATATCGCTGTTGTTTCGG 536
|||||||||||||||| |||||||||||| |||||||||| |||||||||||||| ||||
Sbjct 474 TGAAAGAAGCGAGGAATACTCAAGAAGCGATATCTGGTGATGATATCGCTGTTGTCTCGG 533
Query 537 GTTTGTTTGCTGAGCAGAATGTGTCTAAAGAAGAGAGAGAGCCTTTGCTTACTTGGAACC 596
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GTTTGTTTGTTGAGCAGAATGTGTCTAAAGAAGAGAGAGAGCCTTTGCTTACTTGGAACC 593
Query 597 GTTTGGAAAGT-TTGGTTGATAATGCACAGAGCTTAGTTAATGGAGTTGATGCTATTAAG 655
||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 594 GTTTGGAAAGTCTTG-TTGATAATGCACAGAGTTTAGTTAATGGAGTTGATGCTATTAAG 652
Query 656 GAAGCTGGCATTGTTTGGGAGAGTCTTGTGTCAGCTGTTGAAGCTAAGAAACTAGCTGAT 715
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 653 GAAGCTGGCATTGTTTGGGAGAGTCTTGTGTCTGCTGTTGAAGCTAAGAAACTAGTTGAT 712
Query 716 GTCAATGAAAATCAAACGAGGAAAGGGAAAGAAGAGCTTTGTCCTCAGTTTCTCAGCAAA 775
|| ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 713 GTTAATGAAAATCAGACGAGGAAAGGAAAAGAGGAGCTTTGTCCTCAGTTTCTAAGCAAA 772
Query 776 ATGAATGCTACTGAAGCTGATGAGAGTAGTCTCAAGTTGAAAATTCCTTGTGGTTTGACT 835
|||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct 773 ATGAATGCTACTGAAGCTGATGGGAGTAGTCTGAAGTTGCAAATTCCTTGTGGTTTGACT 832
Query 836 CAGGGTTCCTCCATCACAGTTATTGGCATCCCAGATGGTCTTGTTGGTAGTTTCCGGATT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 833 CAGGGTTCCTCCATCACAGTTATTGGCATCCCAGATGGTCTTGTTGGTAGTTTTCGGATT 892
Query 896 GATCTAACGGGACAACCGCTTCCAGGGGAGCCTGATCCGCCCATTATTATGCATTACAAT 955
|||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||
Sbjct 893 GATCTAACGGGACAACCGCTTCCAGGGGAGCCTGATCCACCCATCATTGTGCATTATAAT 952
Query 956 GTTAGGCTTCTTGGTGACAAGTCGACGGAAGACCCTGTAATTGTTCAAAACAGTTGGACG 1015
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 953 GTTAGGCTTCTTGGTGACAAATCGACGGAAGACCCTGTGATTGTTCAAAACAGCTGGACG 1012
Query 1016 GCATCTCATGATTGGGGCCCTGAGGAACGTTGTCCAAACTTTGATCCTGATATGAATAAG 1075
|||||||| || ||||| |||||||||| |||||||| |||||||||||||||||||||
Sbjct 1013 GCATCTCAGGACTGGGGAGCTGAGGAACGCTGTCCAAAATTTGATCCTGATATGAATAAG 1072
Query 1076 AAAGTGGATGACTTGGATGAATGCAACAAGATGGTTGGTAGAGAAGTAAACCGAACTTCT 1135
||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 1073 AAAGTGGATGACTTGGATGAATGCAACAAGATGGTTGGTGGAGAAATTAACCGAACTTCT 1132
Query 1136 TCTACTAGCTTGCAGTCCAACACTTCAAGGGGAGTTCCAGTAGCTAGGGAAGCATCTAAA 1195
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1133 TCAACTAGCTTGCAGTCCAACACTTCAAGGGGAGTTCCAGTAGCCAGGGAAGCATCTAAA 1192
Query 1196 CAGGAAAGATACTTTCCTTTTAAGCAGGGTTTCTTATCGGTTGCTACACTTAGGGTGGGA 1255
|| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CATGAAAAATACTTTCCTTTCAAGCAGGGTTTCTTATCGGTTGCTACACTTAGGGTGGGA 1252
Query 1256 ACAGAAGGAATGCAAATGACAGTTGATGGGAAACATATAACCTCATTCGCTTTCCGCGAT 1315
||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1253 ACAGAGGGAATGCAGATGACAGTTGATGGGAAACATATAACTTCATTTGCTTTCCGCGAT 1312
Query 1316 ACACTGGAGCCATGGCTTGTTAGTGAAGTACGGATTACGGGTGACTTTAGGTTAATATCC 1375
|||||||| || ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1313 ACACTGGAACCGTGGCTTGTTAGTGAAATACGGATTACAGGTGACTTTAGGTTAATATCC 1372
Query 1376 ATTCTTGCTAGTGGTTTGCCCACATCAGAAGAATCAGAGCACGTTGTTGATCTAGAGGCA 1435
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 ATTCTTGCCAGCGGTTTGCCCACATCAGAAGAATCAGAGCACGTTGTTGATCTAGAGGCA 1432
Query 1436 CTAAAAGCACCTCCCCTTTCACCATTAAGGCCACTAGATCTCGTTATTGGTGTTTTCTCC 1495
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1433 CTAAAATCACCTACCCTTTCACCATTAAGGCCACTGGATCTCGTTATTGGTGTTTTCTCC 1492
Query 1496 ACTGCAAACAACTTTAAAAGACGGATGGCTGTGAGAAGAACATGGATGCAATATGATGAT 1555
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1493 ACTGCAAACAATTTTAAAAGACGGATGGCTGTGAGGAGAACATGGATGCAGTATGATGAT 1552
Query 1556 GTTAGATCTGGAAGAGTTGCAGTACGCTTTTTTGTTGGCCTTCACAAAAGTCCTCTTGTT 1615
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GTAAGATCTGGAAGAGTTGCAGTACGCTTTTTTGTTGGCCTTCACAAAAGTCCTCTTGTT 1612
Query 1616 AACCTGGAACTCTGGAATGAGGCTCGGACTTACGGTGATGTTCAGCTAATGCCCTTTGTT 1675
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 AACTTGGAACTCTGGAACGAGGCTCGGACTTACGGTGATGTTCAGCTAATGCCCTTTGTT 1672
Query 1676 GATTACTACAGTCTTATTAGTTGGAAAACACTAGCCAACTGCATCTTCGGGACAGAGGTT 1735
||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1673 GATTATTACAGTCTCATCAGTTGGAAAACACTAGCCATCTGCATCTTCGGGACAGAGGTT 1732
Query 1736 GACTCAGCCAAGTTCATCATGAAAACGGATGATGACGCCTTTGTTCGTGTAGATGAAGTA 1795
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 GACTCAGCCAAGTTCATCATGAAAACGGATGATGACGCCTTTGTTCGTGTAGATGAAGTG 1792
Query 1796 CTACTTTCTTTATCAATTACCAACAACACTCGCGGGTTAATATACGGACTGATCAATTCT 1855
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 TTACTTTCTTTATCAATGACCAACAACACTCGCGGGTTAATATACGGACTGATCAATTCC 1852
Query 1856 GACTCTCAACCTATTCGAAACCCCGATAGCAAATGGTACATCAGTTACGAGGAATGGCCT 1915
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1853 GACTCTCAACCTATTCGAAACCCTGATAGCAAATGGTACATCAGTTATGAGGAATGGCCT 1912
Query 1916 GAAGAGAAATATCCACCATGGGCGCATGGTCCAGGCTACATTGTATCCCGGGACATAGCA 1975
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1913 GAAGAGAAATATCCACCATGGGCGCATGGTCCAGGCTACATTGTATCTCGTGACATAGCA 1972
Query 1976 GAATCGGTTGGTAAGCTTTTCAAAGAAGGAAACCTAAAGATGTTTAAGCTAGAAGATGTG 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 GAATCGGTTGGTAAGCTTTTCAAAGAAGGAAACCTAAAGATGTTTAAGCTAGAAGATGTG 2032
Query 2036 GCAATGGGGATATGGATAGCTGAGCTGACGAAACATGGACTCGAGCCTCATTACGAAAAC 2095
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2033 GCAATGGGGATATGGATAGCTGAGCTGACAAAACATGGACTCGAGCCTCATTACGAAAAC 2092
Query 2096 GATGGAAGGATCATTAGTGATGGATGCAAGGACGGTTATGTGGTTGCTCATTACCAAAGC 2155
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2093 GATGGAAGGATCATTAGTGATGGATGCAAGGATGGTTATGTGGTTGCTCATTACCAAAGC 2152
Query 2156 CCCGCCGAAATGACTTGCCTTTGGCGTAAATATCAAGAAACCAAACGCTCTCTTTGCTGC 2215
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2153 CCTGCCGAAATGACTTGCCTTTGGCGTAAATACCAAGAAACCAAACGCTCTCTTTGCTGC 2212
Query 2216 CGCGAATGGTAA--C---A-C-----T-TTA-AACCATTGCGGTTTGGT-C-CG---C-- 2255
|||||||||||| | | | | || |||||||||| |||||| | || |
Sbjct 2213 CGCGAATGGTAAAACGTGAACGCACATATTTCAACCATTGCGTTTTGGTTCACGTGTCCT 2272
Query 2256 ---A--GGTACATAAAGAGAAAAGAGTTCATTCTTAG-TCACAAAATATTTGAATTCGTT 2309
| ||||||||| || ||| |||||||||||| | ||||||||||||||| || |||
Sbjct 2273 TCCACAGGTACATAA-GA-AAA-GAGTTCATTCTTTGGTCACAAAATATTTGATTTTGTT 2329
Query 2310 TGTTTGTTGTACAAGTAGCCTAGATTTGCAATTTAGTTT-A-------G-GTGTATATTA 2360
|||||||||||||||||| ||||||||||| |||||||| | | ||||||||||
Sbjct 2330 TGTTTGTTGTACAAGTAGACTAGATTTGCAGTTTAGTTTTACTTTTACGTGTGTATATTA 2389
Query 2361 CAAAGATGTACTAAAACTTTGAACTGATA 2389
|||||||||||||||||||| ||||||||
Sbjct 2390 CAAAGATGTACTAAAACTTTCAACTGATA 2418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118623887835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5