BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472720
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26800.1 | Symbols: | RING/U-box superfamily protein | chr1... 1480 0.0
> AT1G26800.1 | Symbols: | RING/U-box superfamily protein | chr1:9285099-9286324
REVERSE LENGTH=1226
Length=1226
Score = 1480 bits (801), Expect = 0.0
Identities = 1077/1201 (90%), Gaps = 55/1201 (5%)
Strand=Plus/Plus
Query 1 CGTTAATAATTTCTAGATCTTT---C--C--GCA-A-GCAACTCTCTTAAATCTTGAAAC 51
|||||||||||||||||||||| | | || | ||||||| |||||||||||||||
Sbjct 42 CGTTAATAATTTCTAGATCTTTCCACAACATTCATACGCAACTCCCTTAAATCTTGAAAC 101
Query 52 G-CCAAGTTTCCTTAGAGAATCAAACAATTATTTTGTTTTGAGATGGCGACAGAACAAGA 110
| |||| ||| ||| | |||||| || |||| |||| ||||||||||||||||||
Sbjct 102 GACCAA-TTT-CTT----CA--AAACAA-TAGTTTG-TTTGCGATGGCGACAGAACAAGA 151
Query 111 AGCTGAAGTTGGAACAGAGACATCATCTACTTCCGGAAGATTTTTGAGGAACAGAGATTT 170
|||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct 152 AGCTGAAGTTGGAACAGAGACATCCTCTGTTTCCGGAAGGTTTTTGAGGAACAGAGATTT 211
Query 171 ATATCTCTTCTTGCCTTTTCTCTTAGGTTTCTCTGATCAAGAACCATCAAACGGCGATGA 230
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 212 ATATCTCTTCTTGCCTTTTCTCTTAGGCTTCTCTGATCAAGAATCATCAAACGGAGATGA 271
Query 231 TGATGATGTTGCTTCGTCGCGTGAGAGAATCATTTTAGTCAACCCTTTTACACAAGGAAT 290
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TGATGATGTTGCTTCATCGCGTGAGAGAATCATTTTAGTCAACCCTTTTACACAAGGAAT 331
Query 291 GATCGTGCTCGAAGGATCATCGGGAATGAATCCTCTGCTTCGTGA-CATACTGGAGTCAC 349
||| ||||||||||| ||||| ||||||||||||||||||||| | | ||||||||||||
Sbjct 332 GATTGTGCTCGAAGGCTCATCAGGAATGAATCCTCTGCTTCGT-AGCTTACTGGAGTCAC 390
Query 350 GTGAGGAAGGTCGTCCTCCTGCGTCCAAGGCTTCCATCGATGCGATGCCGATCGTTCAGA 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 391 GTGAGGAAGGTCGTCCTCCTGCGTCCAAGGCTTCCATCGATGCGATGCCGATCGTTGAGA 450
Query 410 TCGATGGTTATGAAGGAGAGTGTGTGATCTGTTTGGAGGAGTGGAAGTCCGATGAGATC- 468
| ||||| | |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 451 TTGATGGCTGTGAAGGAGAGTGTGTGATCTGTTTGGAGGAGTGGAAGTCCGAGGAGA-CG 509
Query 469 GTGAAGGAGATGCCGTGTAAGCATAGGTTTCATGGTGGATGTATAGAGAAATGGTTAGGG 528
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 510 GTGAAGGAGATGCCGTGTAAGCATAGGTTTCACGGTGGATGTATAGAGAAATGGTTAGGG 569
Query 529 TTTCATGGGTCGTGTCCTGTTTGTAGGTACGAGATGCCTGTTGATGGAGATGAGGTTGGG 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 570 TTTCATGGGTCGTGTCCTGTTTGTAGGTACGAGATGCCTGTTGATGGAGATGAGATTGGG 629
Query 589 AAGAAAAGAAACGATGGGAGTGAGATTTGGGTTAGGTTTAGTTTCAACGATGGTCCGAGA 648
||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||
Sbjct 630 AAGAAAAGAAACGATGGGAATGAGATTTGGGTTAGGTTCAGTTTCAACGATGGTCGGAGA 689
Query 649 ATTAGAGATTCTTCTG-GTCAGGAAGGTGGAAACAGTGATGGTGTTGAGTCCGAGGATTA 707
|||||||||| ||||| | ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 690 ATTAGAGATTTTTCTGCG-CAGGACGGTGGAAACAGTGATGGTGTTGAGTCCGAGAATTA 748
Query 708 GGATTTTACATAAGAAGcttttgtaaaaa---cttgtgcctttttttgtt-tggtttctt 763
|||||| |||||||||||||||||||||| |||||||||||||||||| | ||| ||
Sbjct 749 GGATTT-ACATAAGAAGCTTTTGTAAAAAAAACTTGTGCCTTTTTTTGTTCTTGTT-CTG 806
Query 764 tttgttc-ttgtttt-CTGTAAATGGCTCTTAAGATG-TGACAAAGTAAGCTTAGGAATC 820
||| | || | || |||||||||| | |||||||||||| |||||||
Sbjct 807 GGAAAAGGTTGATGAACTTTTTTTG--TCTTAAGATGGT-ACAAAGTAAGCTCAGGAATC 863
Query 821 TCCATAATCCTCATCAAACCCTTG-GGCGTCGCTTCTGA-AGTCACACATAACAAAGAGa 878
|||||||||||||||||||||| | ||| || ||||||| | ||||||||||||||||||
Sbjct 864 TCCATAATCCTCATCAAACCCT-GAGGCATCACTTCTGATA-TCACACATAACAAAGAGA 921
Query 879 aaaaaatgaaaaaCCAATCAAGAA-TCGAACATAAGACCAACCAAACCACAAACACTTCT 937
||||||||||||| |||||||||| | | ||||||||||| | ||||||||||||||
Sbjct 922 AAAAAATGAAAAAACAATCAAGAAAT-GTGCATAAGACCAA--A--CCACAAACACTTCT 976
Query 938 TGATTCCTTGATTAAGAGGTTTCAAAAGGACAAAGAAGATGGAAACAGAACTTTCTAGTC 997
|||||||||||||||||| ||||| ||||||||||||||| || || ||||||||| | |
Sbjct 977 TGATTCCTTGATTAAGAGTTTTCAGAAGGACAAAGAAGATAGAGAC-GAACTTTCTGGCC 1035
Query 998 CACCAAGTTGATTAACAGCAGCGATGAATCTGTTTTGAAGCTCACAACTCCATCTCAATC 1057
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1036 CACCAAGTTGATTAACAGCATCGATGAATCTGTTTTGAAGCTCACAACTCCATTTCAATC 1095
Query 1058 TCTGCTTGGATTCCTTTGACTTCTGGTTCTTCTTATT-ATCCATGTTCTGTAGTAACAAT 1116
||| ||| |||||||||||||| |||||||| | ||| | ||||||||||||||||||||
Sbjct 1096 TCTCCTTAGATTCCTTTGACTTATGGTTCTTATCATTTA-CCATGTTCTGTAGTAACAAT 1154
Query 1117 CAAGAATATATGATCTCAAACGCAAAAACACTACTCTGGCCACAAAAAAGATTTAAAAGA 1176
||||||| |||| |||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct 1155 CAAGAAT----GATCCCAAACGCAAAAACATTACTCTGGCCACAATAAAGATTAAAAAGA 1210
Query 1177 A 1177
|
Sbjct 1211 A 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57780827295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5