BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472728
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26770.2 | Symbols: ATEXPA10, AT-EXP10, ATEXP10, ATHEXP ALPH... 1271 0.0
AT2G03090.1 | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1... 420 1e-116
> AT1G26770.2 | Symbols: ATEXPA10, AT-EXP10, ATEXP10, ATHEXP ALPHA
1.1, EXP10, EXPA10 | expansin A10 | chr1:9259750-9260792
FORWARD LENGTH=805
Length=805
Score = 1271 bits (688), Expect = 0.0
Identities = 768/806 (95%), Gaps = 8/806 (1%)
Strand=Plus/Plus
Query 1 AAGTAATAGACTTTATATCACCCATTTGCAGGTTGTTAACACAAGAGGTAAACATGTGTC 60
||||||| || |||||||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct 3 AAGTAATTGATTTTATATCACCCATGTGCAGGTTGTTAACACAAGACGTAAACATGGGTC 62
Query 61 ATCTTGGATTCATAGTTATGGTTATGGTAGGAGTAATGGCTTCTTCTGTGAGCGGCTACG 120
||||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 63 ATCTTGGGTTCTTAGTTATGATTATGGTAGGAGTCATGGCTTCTTCTGTGAGCGGCTA-- 120
Query 121 GTGGCGGTGGCGGTTGGATCAACGCTCACGCCACTTTCTACGGTGGAGGCGATGCTTCCG 180
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 121 ----CGGTGGCGGTTGGATCAACGCTCACGCCACTTTTTACGGTGGTGGTGATGCTTCCG 176
Query 181 GCACAATGGGTGGTGCTTGTGGATATGGTAATCTATATAGCCAAGGCTACGGGACAAGCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 177 GCACAATGGGTGGTGCTTGTGGATATGGTAATCTATATAGCCAAGGCTACGGGACGAGCA 236
Query 241 CGGCGGCTTTGAGCACGGCTTTGTTCAACAACGGACTTAGTTGTGGTTCTTGCTTTGAGA 300
|||||||| | ||||| ||| | |||||||| |||||||| |||||||||||||||||||
Sbjct 237 CGGCGGCTCTAAGCACAGCTCTCTTCAACAATGGACTTAGCTGTGGTTCTTGCTTTGAGA 296
Query 301 TAAGATGTGAAAACGATGGTAAATGGTGTTTACCTGGCTCAATCGTTGTAACCGCTACAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TAAGATGTGAAAACGATGGTAAATGGTGTTTACCTGGCTCAATCGTTGTAACCGCTACAA 356
Query 361 ACTTCTGCCCGCCAAATAACGCGTTAGCGAACAATAATGGTGGTTGGTGTAATCCTCCTC 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 357 ACTTCTGCCCGCCAAATAACGCGTTAGCGAACAATAATGGCGGTTGGTGTAATCCTCCTC 416
Query 421 TTGAACACTTTGACCTTGCTCAGCCTGTTTTTCAACGCATTGCTCAGTACAGAGCTGGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTGAACACTTTGACCTTGCTCAGCCTGTTTTTCAACGCATTGCTCAGTACAGAGCTGGAA 476
Query 481 TCGTCCCTGTTTCCTACAGGAGTTTTCCCTGCAGGAGAAGAGGAGGAATAAGATTCACGA 540
||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 477 TCGTCCCTGTTTCCTACAGAAGGGTTCCTTGCAGGAGAAGAGGAGGAATAAGATTCACGA 536
Query 541 TAAACGGCCACTCATACTTCAACCTTGTGCTGATCACAAACGTCGGTGGTGCCGGAGATG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 537 TAAACGGCCACTCATACTTCAACCTTGTGCTGATCACAAACGTCGGTGGTGCCGGAGACG 596
Query 601 TTCACTCGGCGGCGATCAAGGGTTCAAGAACAG-GTTGGCAAGCTATGTCAAGGAACTGG 659
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 597 TTCACTCGGCGGCGATCAAGGGTTCAAGAACAGTGT-GGCAAGCTATGTCAAGGAACTGG 655
Query 660 GGACAAAATTGGCAAAGCAACTCTTACCTCAACGGTCAAGCACTTTCCTTTAAGGTCACC 719
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GGGCAAAATTGGCAAAGCAACTCTTACCTCAACGGTCAAGCACTTTCCTTTAAGGTCACC 715
Query 720 ACCAGCGACGGCCGCATAGTTGTCTCCTACAACGCCGCTCCTGCCGGCTGGTCTTACGGC 779
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 716 ACCAGCGACGGCCGCACAGTTGTCTCCTTCAACGCCGCTCCTGCCGGCTGGTCTTATGGC 775
Query 780 CAGACTTTTGCCGGTGGACAGTTCCG 805
||||||||||||||||||||||||||
Sbjct 776 CAGACTTTTGCCGGTGGACAGTTCCG 801
> AT2G03090.1 | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA
1.3, EXPA15 | expansin A15 | chr2:916854-918643 REVERSE LENGTH=1358
Length=1358
Score = 420 bits (227), Expect = 1e-116
Identities = 475/593 (80%), Gaps = 24/593 (4%)
Strand=Plus/Plus
Query 135 TGGATCAACGCTCACGCCACTTTCTACGGTGGAGGCGATGCTTCCGGCACAATGGGTGGT 194
||| |||| ||||| || || ||||| |||||| | |||||||| || |||||||||||
Sbjct 177 TGGGTCAATGCTCATGCTACCTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGA 236
Query 195 GCTTGTGGATATGGTAATCTATATAGCCAAGGCTACGGGA-CAAGCACGGCGGCTTTGAG 253
|||||||| || || || || || || ||||| ||||||| ||| ||||||||| |||||
Sbjct 237 GCTTGTGGCTACGGGAACCTCTACAGTCAAGGTTACGGGACCAA-CACGGCGGCGTTGAG 295
Query 254 CACGGCTTTGTTCAACAACGGACTTAGTTGTGGTTCTTGCTTTGAGAT-AAGATGTGAAA 312
||| ||| ||||||||||||| ||||| || || |||| |||||||| ||| ||| | |
Sbjct 296 CACTGCTCTGTTCAACAACGGTCTTAGCTGCGGGGCTTGTTTTGAGATCAAG-TGTCAGA 354
Query 313 ACGATGGTAAATGGTGTTTACCTGGCT-CAATCGTTGTAACCGCTACAAACTTCTGCCCG 371
||| || |||||||||||||| | | ||| |||| || || || || ||||| ||
Sbjct 355 GCGACGGCGCGTGGTGTTTACCTGG-TGCTATCATTGTCACAGCCACCAATTTCTGTCCT 413
Query 372 CCAAATAACGCGT-TAGCGAACAATAATGGTGGTTGGTGTAATCCTCCTCTTGAACACTT 430
|| || ||||| | | | || || ||||||||||||||| ||||| ||| | || ||
Sbjct 414 CCTAACAACGC-TCTTCCCAATAACGCTGGTGGTTGGTGTAACCCTCCGCTTCATCA-TT 471
Query 431 T-GACCT-TGCTCAGCCTGTTTTTCAACGCATTGCTCAGTACAGAGCTGGAATCGTCCCT 488
| || || | ||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 472 TCGATCTCT-CTCAGCCTGTTTTTCAACGCATTGCTCAGTACAAAGCTGGTGTTGTCCCT 530
Query 489 GTTTCCTACAGGAGTTTTCCCTGCAGGAGAAGAGGAGGAATAAGATTCACGATAAACGGC 548
||||||||||| || |||| || | |||||||||||| ||||||||||| || |||||
Sbjct 531 GTTTCCTACAGAAGGGTTCCGTGTATGAGAAGAGGAGGTATAAGATTCACAATCAACGGT 590
Query 549 CACTCATACTTCAACCTTGTGCT-GATCACAAACGTCGGTGGTGCCGGAGATGTTCACTC 607
||||| |||||||||||||| || | | || || || |||||||| ||||||||||| ||
Sbjct 591 CACTCTTACTTCAACCTTGT-CTTGGTGACCAATGTTGGTGGTGCTGGAGATGTTCATTC 649
Query 608 GGCGGCGATCAAGGGTTCAAGAACA-GGTTGGCAAGCTA-TGTCAAGGAACTGGGGACAA 665
|| ||| | || ||||| |||||| ||| ||||| | | ||||||| |||||||||||
Sbjct 650 GGTTGCGGTTAAAGGTTCTAGAACAAGGT-GGCAA-CAAATGTCAAGAAACTGGGGACAG 707
Query 666 AATTGGCAAAGCAAC--TCTTACCTCAACGGTCAAGCACTT-TCCTTTAAGGT 715
|| |||||||||||| ||| | | |||||||||||| || || ||||||||
Sbjct 708 AACTGGCAAAGCAACAATCT--CTTAAACGGTCAAGCA-TTGTCATTTAAGGT 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5