BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472732
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26740.1 | Symbols: | Ribosomal L32p protein family | chr1:... 1085 0.0
AT1G69485.1 | Symbols: | Ribosomal L32p protein family | chr1:... 324 9e-88
> AT1G26740.1 | Symbols: | Ribosomal L32p protein family | chr1:9244981-9246603
REVERSE LENGTH=752
Length=752
Score = 1085 bits (587), Expect = 0.0
Identities = 701/752 (93%), Gaps = 24/752 (3%)
Strand=Plus/Plus
Query 1 CTAGTCTTCACTTCCGTCAGCTATAGCTTTGGAGAAACTGCATCAATGGCGTTGAGATTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CTAGTCTTCACTTCCGTCAGCTATAGCTTTGGAGAAACTGCATCAATGGCGTTGAGATTG 63
Query 61 ACATCGCTAAAACGCGCCGCGGTTGAGTCCTGCCGCATTTTGGAAACCCGAAGCTTCAGC 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 64 ACATCGCTAAAACGCGCCGCGGTTGAGTCCTGTCGCATTTTGGAAACCCGAAGCTTAAGT 123
Query 121 CATGTCGCTGCGATTCCGTCGCCCTTGAACGGAGCATTCGATCGACCGATTTCTATGCCG 180
|||||||||||||| || || |||||||||||||| || ||||| |||||||||||||||
Sbjct 124 CATGTCGCTGCGATGCCTTCCCCCTTGAACGGAGCTTTTGATCGCCCGATTTCTATGCCG 183
Query 181 CCGCTGGTTTTACCTGAGTTCGATCAGAATCAACCGGGTTTGATCGATGAAAAGAGCTTC 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 184 CCGCTGGTTTTACCTGAGTTCGATCAGAATCAACCGGGTTTGATCGAAGAAAAGAGCTTC 243
Query 241 GGGTTCGGGCTTCCTAGTTTTGCTTTTAATGGATCCATGGAGCTAATGGCTGTGCCTAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GGGTTCGGGCTTCCTAGTTTTGCTTTTAATGGATCCATGGAGCTAATGGCTGTGCCTAAG 303
Query 301 AAGAAGATTTCTAAACACAAGAGAGGGATAAGAAATGGCCCAAAGGCTCTTAAGCCTGTT 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 304 AAGAAGATTTCTAAACACAAGAGAGGGATAAGAAATGGTCCAAAGGCTCTTAAGCCTGTT 363
Query 361 CCTGTGATCATCCGTTGCAGGAGTTGCGGGCGAGTTAAGCTGCCACATTTCTTCTGTTGC 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 364 CCTGTGATCATCCGTTGCAGGAGTTGCGGGCGAGTCAAGCTGCCACATTTCTTCTGTTGC 423
Query 421 AGCGGTGAGCGGCTAAACCCTAGC-GAGTAAGGCAATTCGAACAACTGATCAAGGTTTCC 479
|||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||||||
Sbjct 424 AGCGGTGAGCGGCTAAACCCTA-CTGAGTAAGGCAATTCGAACAACTGGTCATGGTTTCC 482
Query 480 AATATGATTACTCCTTGTTGGATATCAAGAGGGA-AAAATCTTGGCTTTCTTAGTAGTAC 538
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 483 AATATGATTACTCCTTGTTGGATATCAAGAGG-ATAAAATCTTGGCTTTCTTAGTAGTAC 541
Query 539 ACTAGAGTGATTATAGACTTAGTTGATGCTGTTTTGGAAAATTATTTTATGCTGCAATAT 598
|||||| |||| | ||||||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 542 ACTAGAATGATAAAAGACTTAGTTGATGCTGTTTTGGCAAATTATTGTATGCTGCAAGAT 601
Query 599 CAATATTC-CATGATTCTTTTGACAAATTATGTTATTGTCATTTTGCTTGTTGCAAAGTT 657
|||||||| |||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 602 CAATATTCTCATGCTTCTCTTGACAAATTATGTTATTGTCATT--GCTTGTTGCAAAGTG 659
Query 658 TAGG-T-AT---AT------------GTGCTCTTAGATTTGGATTCAACAGCTAAATCTA 700
|||| | || || ||||||||||||||||||||||||||||||| ||
Sbjct 660 TAGGATTATCTCATTCACTTTTATTTGTGCTCTTAGATTTGGATTCAACAGCTAAATATA 719
Query 701 TTCTAAATGGATAACTAGATTCACGTGAAACC 732
||| |||||||||| || ||||||||||||||
Sbjct 720 TTCGAAATGGATAAATATATTCACGTGAAACC 751
> AT1G69485.1 | Symbols: | Ribosomal L32p protein family | chr1:26118229-26119576
REVERSE LENGTH=730
Length=730
Score = 324 bits (175), Expect = 9e-88
Identities = 369/458 (81%), Gaps = 31/458 (7%)
Strand=Plus/Plus
Query 46 ATGGCGTTGAGATTGAC-ATCGCTAAAACGCGCCGCGGTTGA-GTCCTGCCGCATTTTGG 103
|||||||||||| |||| | |||||||||||||||| | ||| ||| | || || || |
Sbjct 1 ATGGCGTTGAGACTGACGA-CGCTAAAACGCGCCGCTGCTGATTTCC-GGCGTATATTAG 58
Query 104 AAACCCGAAGCTTCAGCCATGTCGCTGCGATTCCGT-CGCCCTTGA-ACGGAG-CATTCG 160
|| ||||| ||||||| | |||||||||||| | | | ||||| | || | | || |||
Sbjct 59 AATCCCGATGCTTCAGTTACGTCGCTGCGATTTC-TCCTCCCTT-AGACAGCGCCA-TCG 115
Query 161 ATCGAC-CGATTTCTAT-GCCGCCGCTGGTTTTACCTGAGTTCGATCA-GAATCAACCGG 217
|||| | | | || | ||||||||| |||||||| ||||| || | || ||| |||
Sbjct 116 ATCG-CTCTACCGCT-TCGCCGCCGCTTGTTTTACCGGAGTTTTATAATTAA-CAATCGG 172
Query 218 -GT-T-TGATCGATGAAAAGAGCTTCGGGTTCGGGCTTCCT-AGTTT-TGCTTTTAATGG 272
| | | || |||||||| | |||| | ||| || ||||| ||||| | |||| |||
Sbjct 173 ATTCTATCATTGATGAAAATAACTTCAGATTC-GGTTTCCTGAGTTTCT-CTTTCGGTGG 230
Query 273 ATCCATGGAGCTAATGGCTGTGCCTAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAG 332
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 231 ATCCATGGAGCTAATGGCTGTGCCCAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAG 290
Query 333 AAATGGCCCAAAGGCTCTT-AAGCCTGTTCCTGTGATCATCCGTTGCAGGAGTTGCGGGC 391
|||||| |||||||| ||| || ||| ||||||||||||||||||||||||||| ||||
Sbjct 291 AAATGGACCAAAGGC-CTTTAAACCTACTCCTGTGATCATCCGTTGCAGGAGTTGTGGGC 349
Query 392 GAGTTAAGCTGCCACATTTCTTCTGTTGCAGCGGTGAGCGG-CTAA-ACCCT-AGCGAGT 448
||||||||||||||||||||| ||| ||||| ||||||||| | || ||| | | ||
Sbjct 350 GAGTTAAGCTGCCACATTTCTACTGCTGCAGTGGTGAGCGGGC-AATACC-TGAT-GAAC 406
Query 449 AAGGCAATTCGAACAACTGATCAAGGTTTCCAATATGA 486
|| ||||||| ||||||||| |||| || | ||||||
Sbjct 407 AAAGCAATTCAAACAACTGAGCAAGACTTACTATATGA 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5