BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472735
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26710.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1175 0.0
AT1G26720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 678 0.0
> AT1G26710.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G26720.1);
Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9232328-9233144
REVERSE LENGTH=817
Length=817
Score = 1175 bits (636), Expect = 0.0
Identities = 759/819 (93%), Gaps = 6/819 (1%)
Strand=Plus/Plus
Query 1 AATTTTAAGGTGGAGAAAATGACAATACCAACATATAACCTTTTATGCATAGGATCATTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTTTAAGGTGGAGAAAATGACAATACCAACATATAACCTTTTATGCATAGGATCATTC 60
Query 61 ATGTTCTTACTATGTTTCAGCATTACCTTTGGTCGCAAGAACCTAGAAGATAAGCTCGGT 120
|| ||||||||||||||||||||||||||||||||||| |||||| ||| |||| ||||
Sbjct 61 ATTTTCTTACTATGTTTCAGCATTACCTTTGGTCGCAAAAACCTACTAGACAAGCCCGGT 120
Query 121 GACACTCTATTTGCAC-CCAAACCTGTTGAAGCAACCGAGCTTAGAGCCGCTTTAGTTAC 179
| |||||||| ||| | |||||||||||||||| |||||||||||||| |||| |||||
Sbjct 121 GGCACTCTATATGC-CTCCAAACCTGTTGAAGCCGCCGAGCTTAGAGCCACTTTGGTTAC 179
Query 180 TAATTCCGAAGCTACCGACATTTCAAGTAGTATTGGTTTGGGAGAAGTTGGAAGTCAAGA 239
|||| || |||||| ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 180 TAATACCAAAGCTAGAGACATTTCAAGTAATATTGGTTTGGGAGAGGTTGGAAGTCAAGA 239
Query 240 GATGCATCACATTTACATAGAAACAAGT-AAGGATTCGAGTCTCGGAAATAAACAAGACA 298
||||||||||| |||||||| |||| || || ||||| ||||| ||||||||||||||||
Sbjct 240 GATGCATCACACTTACATAGGAACAGGTGAA-GATTCAAGTCTTGGAAATAAACAAGACA 298
Query 299 ATATAAACTCTATGCCTAGGAAGGTTATAAGGGGTATCGTTTCCATCTCATTCTCATTTC 358
||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 299 ATATAAACTCTGTGCCTAGGAAGGTTATAAGAGGTATCGTTTCCATCTCATTCGCATTTC 358
Query 359 CTATCATCAAGATTGGGGTTCCTATTCCGAAGCCAAATATTACGGTGGCTGCCATAAACC 418
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTATCATCAAGATTCAGGTTCCTATTCCGAAGCCAAATATTACGGTGGCTGCCATAAACC 418
Query 419 AACTCAACGAAGAAGAGATGATTAAAGGCATCGTCATAACTCCAACGAAGACTAATGAGT 478
||||| | ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 419 AACTCGATGAAGAAGAGATGATTAAAGGCATTGTCATAACTCCAACAAAGACTAATGAGT 478
Query 479 TGTGTATTTCCCTTGGAAATGACGGTTTAGAGCTCTCATATAGCTAAAAACAATCTCAAG 538
|||||||||||||||||||| ||| | ||||||||||||| ||||||||||||| |||||
Sbjct 479 TGTGTATTTCCCTTGGAAATTACGATGTAGAGCTCTCATACAGCTAAAAACAATTTCAAG 538
Query 539 AGCCGTATATCGAAGGCCCATTGCCAACTTCCTAAGGGTTATGCTGGAGATTGAAGTGAC 598
|||||||| ||| ||||||||||||| || ||||||||||| |||||||| ||||| |
Sbjct 539 AGCCGTATGTCGCAGGCCCATTGCCAGTTTTCTAAGGGTTATTCTGGAGATGGAAGTTAG 598
Query 599 TATAAAACATATGACGAATTGATAAAGTTGATGGAAGTACttttttttttttGGACAAAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TATAAAACATATGACGAATTGATAAAGTTGATGGAAGTACTTTTTTTTTTTTGGACAAAG 658
Query 659 TACTTGATGGAAGTACTTGAGTTATGGTTTAAGAGACAAATAAGTTGTTGGTGACCAACG 718
|||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||
Sbjct 659 TACTTGATGGAAGTACTTAAGTTATGGTTCAAGAGACAAATAAGTAGTTGGTGACCAACG 718
Query 719 AGTATAAACAATATATGTAGCCATCATTAACAATGACAAAAGGATATATGTGAACCATTT 778
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 AGTATAAACAAAATATGTAGCCATCTTTAACAATGACAAAAGGATATATGTGAACCATTT 778
Query 779 TTGTAATTATCTATTTACTATGCTGTAAGTACCTATGAT 817
| ||||| |||||||||||||||| ||| |||||||||
Sbjct 779 T-GTAAT-ATCTATTTACTATGCTATAAAAACCTATGAT 815
> AT1G26720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G26710.1); Has
9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:9234303-9234812
REVERSE LENGTH=510
Length=510
Score = 678 bits (367), Expect = 0.0
Identities = 457/499 (92%), Gaps = 11/499 (2%)
Strand=Plus/Plus
Query 19 ATGACAATACCAACATATAACCTTTTATGCATAGGATCATTCATGTTCTTACTATGTTTC 78
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGACAACACCAACATATAACCTTTTATGCATAGGATCATTCATGTTTTTACTATGTTTC 60
Query 79 AGCATTACCTTTGGTCGCAAGAACCTAGAAGATAAGCTCGGTGACACTCTATTTGCAC-C 137
|||||| |||||||||||| |||||| |||| ||||||||||||||||||||||| | |
Sbjct 61 AGCATTGGCTTTGGTCGCAAAAACCTACAAGACAAGCTCGGTGACACTCTATTTGC-CTC 119
Query 138 CAAACCTGTTGAAGCAACCGAGCTTAGAGCCGCTTTAGTTACTAATTCCGAAGCTACCGA 197
|||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||
Sbjct 120 CAAACCTGTTGAAGCAACCGAGCTTAGAGCCGCTTTGGTTTCTAACACCGAAGCTAGAGA 179
Query 198 CATTTCAAGTAGTATTGGTTTGGGAGAAGTTGGAAGTCAAGAGATGCATCACATTTACAT 257
||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 180 CATTTCAGGTAGTATTGGTTTGGGAGAGGTTGGAAGTCAAGAGATGCATCATATTTACAT 239
Query 258 AGAAACAAGT-AAGGATTCGAGTCTCGGAAATAAACAAGACAATATAAACTCTATGCCTA 316
||||||| || || ||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 240 AGAAACAGGTGAA-GATTCAAGTCTTGTAAATAAACAAGACAATATAAACTCTATGCCTA 298
Query 317 GGAAGGTTATAAGGGGTATCGTTTCCATCTCATTCTCATTTCCTATCATCAAGA-TTGGG 375
|||||||||||||||||| |||||||||||||||||||||||||||||||| || || |
Sbjct 299 GGAAGGTTATAAGGGGTACCGTTTCCATCTCATTCTCATTTCCTATCATCA-GAATTAAG 357
Query 376 GTTCCTATTCCGAAGCCAAATATTACGGTGGCTGCCATAAACCAACTCAACGAAGAAGAG 435
|||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 358 GTTCCTATTCCGAAGCCAAATATTACGGTGGCTGAAAGAAACCAACTCAATGAAGAAGAG 417
Query 436 ATGATTAAAGGCATCGTCATAACTCCAACGAAGACTAATGAGTTGTG-TATTTCCCTTGG 494
|| | |||||||| ||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 418 AT--T-AAAGGCATTGTCATAACTCCAACGAAGACTAATGAGTT-TGGTCTTTCCCTTGG 473
Query 495 AAATGACGGTTTAGAGCTC 513
|||||||||| |||||||
Sbjct 474 AAATGACGGTGCAGAGCTC 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39785444424
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5