BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472743
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26650.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1962 0.0
AT1G69430.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 712 0.0
> AT1G26650.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G69430.1);
Has 205 Blast hits to 204 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9210089-9211560
FORWARD LENGTH=1472
Length=1472
Score = 1962 bits (1062), Expect = 0.0
Identities = 1248/1336 (93%), Gaps = 19/1336 (1%)
Strand=Plus/Plus
Query 1 CAAAATCACGTTCACTTGTGCCACCGACAAAACTGGAAATCTTTCAtttttttttttCTC 60
||||| |||||||||||||||||||||||||| |||||||||| |||||||| |||||||
Sbjct 1 CAAAAGCACGTTCACTTGTGCCACCGACAAAATTGGAAATCTTACATTTTTTGTTTTCTC 60
Query 61 TAAACAAAATTATTGTAGGAAC---G---AGATCTGTGCCAAGATTCGTATTTTCCACTT 114
||| |||||||||||| ||||| | ||||| || ||||||||||| |||| ||
Sbjct 61 TAATCAAAATTATTGTTGGAACGTAGACAAGATCCGTTCCAAGATTCGTCTTTT----TT 116
Query 115 GAATGACCCAATTTGATTCCTGGGTTATATGAAAGATCTTCTCTTTGCTTCGATTTCTAT 174
| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 117 ---T--TTCAATTTGATTCCTGGGTTATCTGAAAGATCTTCTCTTTGCTTCGATTTCTAT 171
Query 175 CTCCGCTGCTTGTGAAATCAAGATTTTTGGTATGTAATTTCGAACTTAGCTGAAACCCAC 234
||||||||||||||||||||| ||| ||||||||||| ||||||| |||| |||| |||
Sbjct 172 CTCCGCTGCTTGTGAAATCAACCTTTATGGTATGTAATCTCGAACTCAGCTAAAACACAC 231
Query 235 TTCACTCTCAGAAAAAATGGAGACGGAAACGAATCAGGTTTTGCGGAAACCGGAGCTGAA 294
||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 232 TTCACTCTC-GGAAACATGGAGACGGAAACGAATCAGGTTTTACGGAAACCGGAGCTAAA 290
Query 295 ATCATACAGTCACAAGCAATTTCACTCTTCAAATGCATTAGAGATCTTGAGAGAAACAGT 354
||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 291 ATCATACAGTCACAAACAATTTCACTCCTCAAATGCGTTAGAGATCTTAAGAGAAACAGT 350
Query 355 TCGAATCCTCCGGTACAATCTTGGTGCTTTCATGATAACTACTGCTGTTTTGATCTGTCC 414
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 351 TCGAATTCTCCGGTACAATCTTGGTGCTTTAATGTTAACTACTGCTGTTTTGATCTGTCC 410
Query 415 TGTATCTGCTTTACTCTTACCAAATTTTTTAGTTGATCAATCACTAGTGAACAAACTCAC 474
||| |||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 411 TGTCTCTGCTTTGCTCTTACCAAACTTTTTAGTTGATCAATCATTAGTGAATAAACTCAC 470
Query 475 AGTGAAGCTTCTTTTAGTGGC-AAAGTCAAGTGGTCTTCCTTTGCAGCCTTTTGTCAAAC 533
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 471 AGTGAAGCTTCTTTTAGTGGCGAAA-TCAAGTGGTCTTCCTTTGCAGCCTTTTGTCAAAC 529
Query 534 ACTCTTGTCAGAAATTCGCTGAAACTGCTGTTTCGTCTGCAATGTGTTTCCCTTTGTTCA 593
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 530 ATTCTTGTCAGAAATTCGCTGAAACTGCTGTTTCGTCTGCAATGTGTTTCCCTGTGTTTA 589
Query 594 TCACTGTGTCTCTATTGTCTAAAGCAGCTGTGATTTACTCAGTGGATTGCACTTACTCGA 653
||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 590 TCACTGTGTCTCTGTTGTCTAAAGCAGCTGTGGTTTACTCAGTGGATTGTTCTTACTCGA 649
Query 654 GGGAAATAGTTGATATTAGCAAGTTCTTGGGTACATTGCAGAAGATATGGAGAAGAGTTG 713
||||| |||||||||| ||||||||||||| || |||||||||||||||||| |||||||
Sbjct 650 GGGAAGTAGTTGATATAAGCAAGTTCTTGGTTATATTGCAGAAGATATGGAGGAGAGTTG 709
Query 714 TGTTCACTTACCTTTGGATTTGCATTCTGATTGTTGGTTGCTTCACTTTCTTCTGCGTTC 773
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 710 TGTTCACTTACGTTTGGATTTGCATTCTGATTGTTGGTTGCTTCACTTTCTTTTGCGTTC 769
Query 774 TTCTTGTTGCAATCTGCAGTTCATTCTCTGTTCTCGGCTTTTCTCCTGATTTCAATGTTT 833
||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 770 TTCTTGTAGCAATCTGCAGTTCCTTCTCTGTTCTCGGCTTCTCTCCAGATTTCAATGTTT 829
Query 834 ATGGAGCCATGTTAGTTGGTTTAGCATTCTCTGTAGTTTTCGCTAACGCGATTATAATCT 893
||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 830 ATGGAGCTATGCTAGTTGGTTTAGCCTTCTCTGTAGTTTTCGCTAACGCGATTATAATCT 889
Query 894 GCAACACCGCGATTGTGATCTCGGTTTTGGAAGATGTTTCAGGGTTAGGAGCATTGATGA 953
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GCAACACTGCGATTGTGATCTCGGTTTTGGAAGATGTTTCAGGGTTAGGAGCATTGATGA 949
Query 954 GAGCTAGTGATTTGATCAAAGGGCAGATTCAGGTTGGTTTGTTGATGTTCCTTGGGTCGA 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 950 GAGCTAGTGATTTGATCAAAGGGCAGATTCAGGTTGGTTTGTTGATGTTCCTTGGATCAA 1009
Query 1014 CGTTAGGATTGGCGTTTGTGGAAGGATTGTTTGATCACAGAGTGAAGAAAGTGAGTTATG 1073
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1010 CTTTAGGATTGGCGTTTGTGGAAGGATTGTTTGATCACAGAGTGAAGAAAGTTAGTTATG 1069
Query 1074 GAGATGGGTCTTCGAGGTTATGGGAAGGACCTCTTTTGGTGTTGATGTATTCCTTTGTGA 1133
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GAGATGGCTCTTCGAGGTTATGGGAAGGACCTCTTTTGGTGTTGATGTATTCCTTTGTGA 1129
Query 1134 CTCTTATAGATTCGATGATGAGTGCAGTGTTCTATTTTAGCTGTCGAGTTTATTATAGTA 1193
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1130 CACTTATAGATTCGATGATGAGTGCAGTGTTCTATTTTAGCTGCCGAGTTTATTATAGTA 1189
Query 1194 TGGAAGCTTCTAGAGGTGAAACTCAGCCAATCATGGAAACGGTTGCGGTTGTGGATGCTG 1253
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1190 TGGAAGCTTCTAGAGGTGAAACTCAGCCAATCATGGAAACGGTTACGGTTGTGGATGCTG 1249
Query 1254 AGTAATGGTTGTGTTGTGCGGATCAAACTCGGTGAATCGACATGGAAGCGTATTAGCTGA 1313
||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1250 AGTAATGGT-GCGTTGTGCGGATCAAACTCGGTGAATGGACATGGAAACGTATTAGCTGA 1308
Query 1314 ACAAGAAGTTGTATAT 1329
| ||||||||||||||
Sbjct 1309 AGAAGAAGTTGTATAT 1324
> AT1G69430.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G26650.1);
Has 216 Blast hits to 215 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26097787-26099388
FORWARD LENGTH=1602
Length=1602
Score = 712 bits (385), Expect = 0.0
Identities = 727/887 (82%), Gaps = 43/887 (5%)
Strand=Plus/Plus
Query 335 GAGATCTTGAGAGAAACAGTTCGAATCCTCCGGTACAATCTTGGTGCTTTCATGATAACT 394
||||||||||||||||| ||| |||| |||||||| |||||||||||||||||| ||| |
Sbjct 371 GAGATCTTGAGAGAAACCGTTAGAATTCTCCGGTATAATCTTGGTGCTTTCATGTTAA-T 429
Query 395 -ACTGC-TGTTTTGATCTGTCCTGTATCTGCT-TTACTCTTACCAAATTTTTTAGTTGAT 451
|| | | |||||||||||||||| || ||| || || |||||||| |||||||||||
Sbjct 430 CGCT-CTTCTTTTGATCTGTCCTGTTTCCGCTATT-CTATTACCAAACCTTTTAGTTGAT 487
Query 452 CAATCACTAGTGAACAAACTCACAGTGAAGCTTCTTTTAG-TGGCAAAGTCAAGTGGTCT 510
|||||| | || || ||| ||||||| |||||| |||| | |||| |||||||||||
Sbjct 488 CAATCAGTTGTTAATTCACTTACAGTGAGGCTTCTCTTAGTTTCCAAA-TCAAGTGGTCT 546
Query 511 TCCTTTGCAGCCTTTTGTCA-AACACTCTTGTCAGAAATTCGCTGAAACTGCTGTTTCGT 569
|||||| ||||||||| | || ||||||||||||||||| |||| || |||||||| |
Sbjct 547 TCCTTTATTGCCTTTTGTTAGAA-ACTCTTGTCAGAAATTCTCTGAGACAGCTGTTTCTT 605
Query 570 CTGCAATGTGTTTCCCTTTGTTCATCACTGTGTCTCTATTGTCTAAAGCAGCTGTGATTT 629
||||||||||||||||||||||||||||| |||| || ||||||| ||| |||||| |||
Sbjct 606 CTGCAATGTGTTTCCCTTTGTTCATCACTTTGTCACTCTTGTCTAGAGCTGCTGTGGTTT 665
Query 630 ACTCAGTGGATTGCACTTACTCGAGGGA-AATAGTTGATATT-AGC-AAGTTCT-TGG-G 684
|||| || ||||||||||| |||||| | || ||||| | | | | ||||| | ||| |
Sbjct 666 ACTCTGTTGATTGCACTTATTCGAGGAAGAA-AGTTG-TGGTGA-CTAAGTT-TGTGGTG 721
Query 685 -TACATTGCAGAAGA-TATGGAGAA-GAGTTGTGTTCACTTACCTT-TGGATTTGCATTC 740
|| || ||||| || |||||| || | ||||| |||||||| || |||||||| | |
Sbjct 722 ATA-AT-GCAGA-GACTATGGA-AACGTCTTGTGATCACTTAC-TTGTGGATTTGTACTG 776
Query 741 TGATTGTTGGTTG-CTTCACTTTCTTCTGCGT-TCTTCTTGTTGCAATCTGCAGTTCATT 798
||||||||| ||| || ||||| ||||||||| | |||| || || | || || || ||
Sbjct 777 TGATTGTTGTTTGTCT-CACTTCCTTCTGCGTGT-TTCTCGTCGCGGTTTGTAGCTCTTT 834
Query 799 CTCTGTTCTCGGCTTTTCTCCTGATTTCAATGTTTATGGAGCCATGTTAGTTGGTTTAGC 858
|| ||||||||| || ||||||||||| |||| |||||||| || ||||||||||| |
Sbjct 835 CTATGTTCTCGGATTCTCTCCTGATTTTAATGCCTATGGAGCTATCTTAGTTGGTTTGGT 894
Query 859 ATTCTCTGTAGT-TTTCGCTAACGCGATTATAATCTGCAACACCGCGATTGTGATCTCGG 917
||||| ||||| ||| || || || || || ||||| |||||| |||| |||||||||
Sbjct 895 GTTCTCAGTAGTGTTT-GCAAATGCTATCATTATCTGTAACACCACGATCGTGATCTCGA 953
Query 918 TT-TTGGAAGATGTTTCAGGGTTAGGAGCATTGATGAGAGCTAGTGATTTGATCAAAGGG 976
|| ||| ||||||| || ||| |||||| ||| | ||||| |||||||||||||||||
Sbjct 954 TTCTTG-AAGATGTGTCGGGGCCAGGAGCGTTGGTTAGAGCGAGTGATTTGATCAAAGGA 1012
Query 977 CAGATTCAGGTTGGTTTGTTGATGTTCCTTGGGTCGACGTTAGGATTGGCGTTTGTGGAA 1036
|||| |||||||||||||||||| || || || || || |||| ||| |||||||||||
Sbjct 1013 CAGACTCAGGTTGGTTTGTTGATATTTCTAGGATCAACAATAGGGTTGACGTTTGTGGAA 1072
Query 1037 GGATTGTTTGATCACAGAGTGAAGAAAGTGAGTTATGGAGATGGGTCTTCGAGGTTATGG 1096
||||||||||| || |||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1073 GGATTGTTTGAGCATAGAGTGAAGAGTTTGAGTTATGGAGATGGTTCTTCGAGGTTATGG 1132
Query 1097 GAAGGACCTCTT-TTGGTGTTGATGTATTCCTTTGTGACT-CTTATAGATTCGATGATGA 1154
||||| || || ||| || |||||||||| |||||| | ||||| ||| | |||||||
Sbjct 1133 GAAGGTCCACTACTTG-TGGTGATGTATTCATTTGTGG-TGCTTATTGATACAATGATGA 1190
Query 1155 GTGCAGTGTTCTATTTTAGCTGTCGAGTTTATTATAGTATGGAAGCT 1201
||||||||||||||||||| || || || | | ||||||||||||||
Sbjct 1191 GTGCAGTGTTCTATTTTAGTTGCCG-GTCT-T-ATAGTATGGAAGCT 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5