BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472744
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26640.1 | Symbols: | Amino acid kinase family protein | ch... 1829 0.0
> AT1G26640.1 | Symbols: | Amino acid kinase family protein |
chr1:9207388-9209902 REVERSE LENGTH=1367
Length=1367
Score = 1829 bits (990), Expect = 0.0
Identities = 1181/1268 (93%), Gaps = 34/1268 (3%)
Strand=Plus/Plus
Query 1 GAGAATCTTTCCGGCGAA-AGGAAATGGCAAGAAG--GGA-ACGAGTACGATGAAGTTGA 56
|||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 10 GAGAATCTTTCCGGTGAATGGGAAATGGCAAGAAGAAGGATACGAGTACGATGAAGTTGA 69
Query 57 GTTAGAGCGGGAGTGACA-AC--ACCGTTGACCACTAAAGACGAGAGCTTT----AGAGA 109
||||||||||||| || | || |||||||||||||||||||||||||||| |||||
Sbjct 70 GTTAGAGCGGGAGAGAGAGACATACCGTTGACCACTAAAGACGAGAGCTTTAGAGAGAGA 129
Query 110 CACAACAATGGAGCTGAATATTTCTGAGAGTCGAAGCAGATCAATTCGTTGCATTGTGAA 169
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 130 CGCAACAATGGAGCTGAATATTTCCGAGAGTCGAAGCAGATCAATTCGTTGCATTGTGAA 189
Query 170 ACTTGGAGGTGCGGCGATTACTTGCAAGAACGAGCTAGAGAAGATTCATGATGAGAATCT 229
||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| |||||
Sbjct 190 ACTTGGAGGTGCGGCAATTACTTGCAAAAACGAGCTGGAGAAGATTCACGATGAAAATCT 249
Query 230 GGAGGTCGTGGCGTGTCAGTTACGTCAGGCGATGATGGAGGGTTCAGCTTCGAGCAAGGT 289
||||||||||||||||||||||||||| || ||| |||||||||||||| | ||||||||
Sbjct 250 GGAGGTCGTGGCGTGTCAGTTACGTCAAGCTATGTTGGAGGGTTCAGCTCCAAGCAAGGT 309
Query 290 TATTGGAATGGATTGGAGCAAGAGACCTGGAAGCTCTGAGATTTCTTGTGATGTGGATGA 349
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TATTGGCATGGATTGGAGCAAGAGACCTGGAAGCTCTGAGATTTCTTGTGATGTGGATGA 369
Query 350 CTTAGGGGATCAAGAGTCTTCTGAGTTTAGCAAATTTGTTGTGGTTCATGGCGCAGGTTC 409
| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 370 CATAGGGGATCAAAAGTCTTCTGAGTTTAGTAAATTTGTTGTGGTTCATGGCGCTGGTTC 429
Query 410 CTTTGGGCACTTTCAGGCCAGCAGATCTGGAGTTCACAAAGGAGGACTTGAGAAACCTAT 469
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 430 CTTTGGGCACTTTCAGGCCAGTAGATCTGGGGTTCACAAAGGAGGACTTGAGAAACCTAT 489
Query 470 TGTCAAAGCTGGTTTCGTTGCTACTCGTATATCTGTCACAAATCTTAATCTTGAAATTGT 529
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 490 TGTCAAAGCTGGTTTCGTTGCTACTCGTATATCTGTGACAAATCTTAATCTTGAAATTGT 549
Query 530 ACGAGCACTTGCCAGAGAGGGCATTCCTACAATCGGCATGTCTCCATTTTCATGTGGTTG 589
||||||||| ||| |||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 550 ACGAGCACTAGCCCGAGAGGGCATTCCTACGATAGGCATGTCTCCATTTTCATGTGGTTG 609
Query 590 GTCAACCTCCAAAAGAGATGTGGCTTCTGCGGATCTATCAACCGTAGCTAAAACAATAGA 649
|||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||
Sbjct 610 GTCAACCTCCAAAAGAGATGTGGCTTCTGCAGATCTAGCAACCGTAGCTAAAACCATAGA 669
Query 650 CTCAGGATTTGTCCCTGTTCTCCATGGAGATGCAGTGCTGGACAATATACTGGGCTGCAC 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 CTCAGGATTTGTCCCTGTTCTCCATGGAGATGCAGTGCTGGACAATATACTGGGCTGCAC 729
Query 710 CATATTGAGTGGTGATGTTATCATCCGTCATCTTGCAGATCATTTGAAGCCAGAATACGT 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 730 CATATTGAGTGGTGATGTTATCATCCGTCATCTTGCAGATCATTTGAAGCCAGAATATGT 789
Query 770 TGTCTTTCTCACAGATGTACTAGGTGTCTACGATCGACCACCTTCA------GAGCCTGA 823
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 790 TGTCTTTCTCACAGATGTACTAGGTGTCTACGATCGACCACCTTCACCTTCAGAGCCCGA 849
Query 824 CGCTGTACTCTTGAAAGAGATCGCTGTTGGAGAAGATGGAAGCTGGAAGGTTGTGAATCC 883
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CGCTGTGCTCTTGAAAGAGATCGCTGTTGGAGAAGATGGAAGCTGGAAGGTTGTGAATCC 909
Query 884 AGTGTTGGAGCACACAAACAAGAAAGTTGATTACTCTGTTGCGGCGCACGATACAACCGG 943
| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 910 ACTGTTGGAGCACACAGACAAGAAAGTTGACTACTCTGTTGCGGCGCACGATACAACCGG 969
Query 944 TGGAATGGAAACAAAGATATCAGAAGCTGCTATGATTGCAAAACTTGGAATCGATGTCTA 1003
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 970 TGGAATGGAAACGAAGATATCAGAAGCTGCTATGATTGCAAAACTTGGAGTCGATGTCTA 1029
Query 1004 CATTGTGAAGGCTGCGACAACTCATTCACAGAGGGCACTCAATGGTGATTTGAGAGATAG 1063
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1030 CATTGTGAAGGCTGCGACAACTCATTCACAGAGAGCACTAAACGGTGATTTGAGAGATAG 1089
Query 1064 TGTTCCTGAAGATTGGCTTGGTACTATCATCAGATTCTCAAAGTAGAC-A-------GAC 1115
||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1090 TGTTCCTGAAGATTGGCTTGGTACTATCATCAGATTCTCAAAGTAGAATAATCTCCTGAC 1149
Query 1116 A----CGCTAATTCCAGTTCCTCAACAAAG-AA-GCATTGACCTCTTCTTGCTAATACTA 1169
| | ||||||||||||||||||||||| || |||||||||| ||||||||| ||||
Sbjct 1150 AAATACACTAATTCCAGTTCCTCAACAAAGGAAAGCATTGACCTTTTCTTGCTATTACTG 1209
Query 1170 TTTTACCAGACTTTGTGCGAGGA---CGATATTGTGTAATGTCAAAACAAGTTAAAATGT 1226
|||||||||||||||||| |||| | | || ||||||||||||||| |||||||||||
Sbjct 1210 TTTTACCAGACTTTGTGCAAGGAATACAAAATCGTGTAATGTCAAAACCAGTTAAAATGT 1269
Query 1227 TGAATACT 1234
|||||||
Sbjct 1270 CGAATACT 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61646269260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5