BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472745
Length=781
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26630.1 | Symbols: FBR12, ATELF5A-2, ELF5A-2 | Eukaryotic t... 1112 0.0
> AT1G26630.1 | Symbols: FBR12, ATELF5A-2, ELF5A-2 | Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1) protein | chr1:9205836-9207383
FORWARD LENGTH=897
Length=897
Score = 1112 bits (602), Expect = 0.0
Identities = 708/757 (94%), Gaps = 16/757 (2%)
Strand=Plus/Plus
Query 30 tttttttt-ccttcctctcaatctcatcttcttcttcatcg-aaacctttcttcttctcc 87
|||||||| |||| ||| |||||||| ||||| || || |||||||||||| ||| |
Sbjct 66 TTTTTTTTCCCTT-CTCCCAATCTCA---TCTTC-TC--CGAAAACCTTTCTTC-TCT-C 116
Query 88 caatttctGGTGAAATCATGTCTGACGAAGAACACCACTTCGAGTCCAGCGATTCTGGAG 147
||||||| |||||| |||||||||||| || |||||||| ||| ||||||| || ||||
Sbjct 117 AAATTTCT-GTGAAAACATGTCTGACGACGAGCACCACTTTGAGGCCAGCGAATCCGGAG 175
Query 148 CTTCCAAGACCTATCCTCAA-CAAGCCGGTAACATCCGTAAAGGTGGTCACATCGTCATC 206
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 176 CTTCCAAGACCTATCCTCAATC-AGCCGGTAACATCCGTAAAGGTGGTCACATCGTCATC 234
Query 207 AAAACCCGTCCCTGCAAGGTTGTTGAAGTTTCGACTTCAAAAACTGGCAAGCACGGTCAC 266
|||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 235 AAAAACCGTCCCTGCAAGGTTGTTGAGGTTTCGACTTCCAAAACTGGCAAGCACGGTCAC 294
Query 267 GCCAAATGTCACTTTGTTGCCATTGATATCTTCAATGGTAAGAAGCTTGAAGATATTGTT 326
|||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct 295 GCCAAATGTCACTTTGTTGCTATTGATATCTTCACTGCTAAGAAGCTTGAAGATATTGTT 354
Query 327 CCATCTTCCCACAATTGTGATATTCCACATGTGAACCGTGTTGATTACCAGTTGATTGAC 386
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 355 CCATCTTCCCACAATTGTGATGTTCCACATGTGAACCGTGTTGATTACCAGTTGATTGAT 414
Query 387 ATCACTGAGGATGGCTTTGTGAGCCTTTTGACTGACAGTGGTGGCACTAAGGATGATCTC 446
||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||
Sbjct 415 ATCACTGAGGATGGCTTCGTGAGCCTTCTCACTGACAGTGGTGGCACCAAGGATGATCTC 474
Query 447 AAGCTTCCCACCGATGCCGCTCTCACCGCCCAGATGAGGAGTGGATTCGAAGAGGGTAAG 506
|||||||||||||||| | ||||||||||||||||||| ||||||||| ||||| |||
Sbjct 475 AAGCTTCCCACCGATGATGGTCTCACCGCCCAGATGAGGCTTGGATTCGATGAGGGAAAG 534
Query 507 GATGTTGTGGTGTCTGTCATGTCTTCCATGGGAGAGGAGCAGATCTGTGCCGTGAAGGAA 566
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 535 GATATTGTGGTGTCTGTCATGTCTTCCATGGGAGAGGAGCAGATCTGTGCCGTCAAGGAA 594
Query 567 GTTGGTGGTGGCAAGTAAACAAGTATCATTCGATATATTATTACCAGTTTGACAACAGAC 626
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 595 GTTGGTGGTGGCAAGTAAACAAGTATCATTCGATATATTATTACCAGTTTGACAACGGAC 654
Query 627 GTCAATGTTATAAGAACAAAAAGATG-TTTTCTTTTTCCTAATTTAGACCCTTTGTGTGT 685
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 655 GTCAATGTTATAAGAACCAAAAGATGTTTTTCTTTTTCCTAATTTAGACCCTTTGTGTGT 714
Query 686 GTTTCTTGTTGCAAGACAACCATATCTATTGGTTTTGGATTGTTG-AAAAGTTTGTGTTG 744
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 715 GTTTCTTGTTGCAAGACAACCATATCTATTGGTTTTGGATTGTTGGAAAAGTTTGTGTTG 774
Query 745 AAACATTCAAAGTTTCCTATGAGATGTTATTCTTAAA 781
|||||||||||||||| ||||||||||||||||||||
Sbjct 775 AAACATTCAAAGTTTCTTATGAGATGTTATTCTTAAA 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37977015132
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5